genome.fa.s224.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  17  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2280263--2280427	62	2.6	62	81	6	190	38	13	15	33	1.86
2292466--2292503	20	1.9	19	89	5	58	23	5	0	71	1.07
2292488--2292519	15	2.1	15	94	0	55	15	0	3	81	0.82
2292590--2292644	20	2.8	20	69	20	51	61	1	1	34	1.17
2294250--2294290	7	6.3	7	86	8	52	78	0	9	12	0.98
2294250--2294290	13	3.1	14	82	10	50	78	0	9	12	0.98
2294250--2294290	20	2.2	18	86	8	55	78	0	9	12	0.98
2294691--2294778	8	11.4	8	69	18	53	3	2	21	72	1.10
2294761--2294817	20	2.9	18	82	14	69	0	5	17	77	0.95
2294915--2295296	207	1.8	207	85	3	545	38	14	13	33	1.85
2294917--2295296	104	3.7	104	75	10	382	38	14	13	33	1.84
2295232--2295366	73	1.9	73	87	1	200	36	17	11	34	1.87
2295452--2295553	41	2.5	41	77	16	106	36	8	11	43	1.73
2295710--2295765	23	2.5	23	83	11	64	28	17	5	48	1.69
2295996--2296044	25	2.0	25	83	0	62	32	16	12	38	1.86
2296480--2296521	20	2.0	20	86	4	57	47	19	4	28	1.69
2297648--2297691	16	2.6	17	85	7	54	2	27	0	70	0.99
2297666--2297741	20	3.9	19	71	20	59	3	19	0	76	0.94
2297702--2297760	31	1.9	31	86	6	84	3	15	1	79	0.94
2297719--2297793	28	2.7	28	81	6	80	6	12	1	80	0.97
2297748--2297782	16	2.2	16	89	0	52	11	5	0	82	0.82
2297752--2297819	28	2.3	29	80	14	70	8	16	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2298263--2298347	5	16.8	5	73	15	59	3	18	1	76	1.00
2298270--2298346	9	8.3	9	74	16	52	3	19	1	75	1.03
2298263--2298319	21	2.8	20	83	2	69	3	21	1	73	1.07
2298309--2298361	17	3.1	18	72	8	56	3	16	0	79	0.88
2298269--2298362	35	2.7	35	80	8	95	4	20	1	74	1.05
2298304--2298356	25	2.1	25	82	6	63	1	16	0	81	0.79
2303173--2303208	7	5.1	7	87	12	56	27	0	0	72	0.85
2303397--2303467	9	8.4	8	71	11	52	76	4	4	15	1.10
2303407--2303467	17	3.5	17	80	4	59	77	4	3	14	1.07
2304440--2304577	46	3.0	46	83	1	170	42	18	8	31	1.80
2304472--2304574	45	2.3	46	87	1	154	43	18	8	29	1.80
2305333--2305445	51	2.2	51	79	0	127	39	11	17	30	1.85
2306094--2306182	32	2.8	32	71	19	94	44	8	23	22	1.81
2306064--2306330	120	2.2	121	82	4	335	43	12	22	21	1.85
2311364--2311449	44	2.0	44	81	9	104	73	4	2	19	1.12
2312438--2312526	45	2.0	46	93	2	153	39	19	10	31	1.84
2315188--2315233	18	2.6	17	82	3	56	19	0	2	78	0.86
2317200--2317233	18	1.9	17	88	5	50	79	2	2	14	0.97
2323710--2323876	63	2.6	63	79	9	171	39	11	13	34	1.82
2331259--2331345	42	2.1	42	88	0	129	39	24	5	31	1.79
2331359--2331462	40	2.6	39	73	13	93	38	10	14	36	1.81
2331387--2331465	40	2.0	40	87	5	115	45	11	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2331055--2331746	211	3.4	207	84	7	819	36	14	13	35	1.85
2341447--2341542	42	2.3	42	83	3	113	72	2	16	8	1.18
2342992--2343035	20	2.2	20	84	4	54	27	6	13	52	1.66
2345983--2346031	23	2.1	24	84	3	64	61	2	12	24	1.42
2346315--2346366	17	3.1	17	76	17	63	69	7	11	11	1.37
2351702--2351780	42	2.0	42	82	12	103	31	3	1	63	1.20
2351758--2351791	3	11.3	3	100	0	68	32	0	0	67	0.91
2352086--2352120	17	2.1	17	88	0	52	65	11	17	5	1.43
2352225--2352253	4	7.2	4	100	0	58	24	0	0	75	0.80
2352294--2352382	6	15.5	6	76	15	82	16	4	1	77	0.99
2352294--2352382	17	5.2	16	80	14	99	16	4	1	77	0.99
2352294--2352382	27	3.1	29	82	11	103	16	4	1	77	0.99
2352401--2352675	61	4.7	57	86	5	300	42	6	12	37	1.70
2352417--2352675	60	4.4	58	86	5	290	42	7	12	37	1.70
2355673--2355722	20	2.5	19	81	12	55	16	4	14	66	1.40
2355673--2355722	21	2.5	20	80	3	55	16	4	14	66	1.40
2356581--2356654	24	3.2	23	79	5	78	83	0	12	4	0.77
2356584--2356637	12	4.5	12	84	9	74	87	0	11	1	0.63
2356583--2356645	12	5.3	12	81	16	62	84	0	12	3	0.75
2356581--2356637	20	2.7	20	86	8	69	87	0	10	1	0.61
2356581--2356637	1	57.0	1	76	0	51	87	0	10	1	0.61
2364174--2364222	23	2.1	24	84	3	64	61	2	12	24	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2364505--2364556	17	3.1	17	78	15	63	67	7	13	11	1.42
2369853--2370001	6	23.7	6	72	14	52	24	2	2	70	1.11
2369872--2370001	19	6.9	19	73	17	78	26	2	1	69	1.10
2369965--2369999	3	11.7	3	100	0	70	31	0	0	68	0.90
2370040--2370079	11	3.5	12	75	25	50	27	5	5	62	1.37
2370040--2370091	19	2.6	19	84	9	59	25	5	5	63	1.39
2370040--2370091	22	2.5	21	87	9	72	25	5	5	63	1.39
2370008--2370100	22	4.5	19	70	21	62	27	5	5	61	1.40
2370427--2370468	3	14.0	3	100	0	84	33	0	0	66	0.92
2370494--2370560	6	11.7	6	76	17	54	14	4	1	79	0.97
2370493--2370543	26	1.9	27	88	4	68	13	5	0	80	0.89
2370588--2370790	60	3.5	57	86	7	243	41	7	13	37	1.72
2373801--2373851	22	2.3	22	83	6	59	15	3	11	68	1.34
2374723--2374766	21	2.0	21	86	13	61	81	0	13	4	0.83
2374747--2374779	13	2.5	13	90	9	50	84	0	15	0	0.61
2374747--2374796	15	3.4	14	79	15	57	80	0	16	4	0.87
2376002--2376060	22	2.7	22	86	5	75	37	8	20	33	1.83
2376243--2376324	43	1.9	42	90	2	128	37	10	14	36	1.82
2376599--2376975	42	9.0	41	85	5	407	24	16	21	37	1.93
2377214--2377280	25	2.7	24	79	6	71	26	10	2	59	1.45
2377324--2377370	19	2.4	20	85	3	60	27	4	4	63	1.31
2377745--2377832	6	14.5	6	76	15	67	17	5	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2377745--2377832	5	16.8	5	76	18	74	17	5	0	77	0.96
2377745--2377832	22	3.9	22	80	12	99	17	5	0	77	0.96
2377740--2377837	16	6.1	16	68	22	55	17	7	0	75	1.02
2377859--2378126	61	4.5	59	87	7	368	41	6	14	38	1.72
2382253--2382291	18	2.2	18	100	0	78	35	10	17	35	1.84
2385940--2386283	146	2.4	139	80	7	354	50	9	19	20	1.75
2387242--2387394	59	2.5	60	79	4	173	45	15	13	25	1.82
2387513--2387584	26	2.8	26	82	0	90	33	18	12	36	1.88
2387875--2387918	23	1.9	23	85	0	61	29	13	22	34	1.93
2388186--2388258	22	3.3	22	88	1	101	32	27	13	26	1.94
2388335--2388386	22	2.4	22	80	0	59	42	21	7	28	1.80
2388118--2388388	149	1.8	149	85	0	380	37	18	12	31	1.88
2388220--2388590	126	2.9	126	79	10	391	36	15	13	33	1.87
2397713--2398010	149	2.1	140	82	6	355	50	9	19	21	1.75
2397814--2398092	149	1.9	149	82	5	350	50	9	19	20	1.75
2399624--2399690	23	2.9	23	76	8	73	32	20	19	26	1.97
2399918--2399981	22	2.9	22	88	6	94	39	25	9	26	1.86
2399825--2400109	149	1.9	147	80	5	324	37	18	12	31	1.88
2401602--2401633	12	2.7	12	95	0	55	46	37	6	9	1.61
2402075--2402130	14	4.1	14	77	9	53	76	1	17	3	1.01
2404401--2404439	10	3.9	10	90	10	62	89	7	2	0	0.56
2406043--2406067	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2408041--2408118	22	3.6	21	75	6	61	29	21	21	26	1.99
2408351--2408537	32	5.8	32	68	8	108	35	19	16	28	1.93
2408870--2408908	14	2.8	14	81	11	53	84	7	7	0	0.77
2411553--2411625	37	2.0	36	83	2	92	61	0	4	34	1.15
2411723--2411804	25	3.3	24	81	11	69	46	23	12	18	1.82
2411740--2411834	25	3.8	25	86	5	111	47	23	10	18	1.80
2411768--2411834	13	5.3	13	82	5	84	49	20	11	17	1.79
2411800--2411833	12	2.8	12	90	4	50	50	26	8	14	1.72
2413222--2413277	26	2.1	27	90	3	87	55	14	7	23	1.63
2420761--2420993	65	3.6	64	76	9	215	45	7	5	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64