genome.fa.s224.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  15  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1961430--1961473	18	2.4	18	92	0	70	27	13	29	29	1.94
1966420--1966564	66	2.2	65	82	10	165	37	11	8	42	1.72
1966888--1966927	21	1.9	21	94	0	71	52	30	7	10	1.62
1967897--1968245	168	2.1	169	96	1	655	43	6	3	46	1.46
1971996--1972036	2	20.5	2	100	0	82	48	0	0	51	1.00
1973136--1973212	30	2.6	30	65	0	73	40	11	2	45	1.54
1984974--1985038	5	13.0	5	73	12	53	20	4	1	73	1.08
1986355--1986387	2	16.5	2	100	0	66	51	0	0	48	1.00
1993666--1993993	167	2.0	165	79	8	362	34	13	20	32	1.91
1995375--1995432	21	2.7	21	94	2	98	44	5	36	13	1.66
1999238--1999297	24	2.5	24	91	2	93	35	0	55	10	1.34
1999557--1999606	21	2.5	20	80	6	57	32	0	2	66	1.03
1999848--1999892	3	15.0	3	100	0	90	66	0	0	33	0.92
2001661--2001703	17	2.5	17	85	7	52	32	23	2	41	1.67
2005258--2005290	15	2.1	16	94	5	59	84	6	9	0	0.76
2005707--2005745	15	2.6	15	100	0	78	64	0	35	0	0.94
2007331--2007427	42	2.3	41	87	3	140	29	10	21	38	1.87
2007537--2007710	81	2.1	80	79	12	185	31	10	17	40	1.83
2007691--2008037	137	2.5	137	85	3	468	26	12	15	45	1.82
2008058--2008157	40	2.5	42	80	8	109	28	14	16	42	1.86
2007359--2008408	513	2.0	515	87	3	1555	26	12	17	43	1.85
2008477--2008538	23	2.9	21	67	9	61	43	9	11	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2008474--2008630	45	3.5	45	75	11	133	42	10	9	37	1.73
2008536--2008584	22	2.3	22	85	3	73	51	8	6	34	1.57
2008491--2008598	22	4.8	23	71	12	71	45	8	10	36	1.68
2008531--2008654	46	2.7	45	78	7	124	41	12	8	38	1.72
2009770--2009803	16	2.1	16	88	0	50	2	8	5	82	0.93
2012938--2012986	21	2.3	22	85	3	64	65	14	2	18	1.37
2014527--2014583	25	2.2	24	82	14	69	77	10	5	7	1.12
2015692--2015733	21	2.0	21	86	4	59	64	9	0	26	1.24
2015728--2015788	6	10.3	6	76	3	52	60	4	3	31	1.34
2019659--2019689	12	2.6	12	100	0	62	77	12	9	0	0.99
2020935--2020977	19	2.2	19	87	4	59	9	13	13	62	1.53
2024189--2024266	15	5.0	15	72	20	61	67	0	2	29	1.03
2024183--2024266	4	21.0	4	74	17	52	67	1	2	28	1.10
2024183--2024266	11	7.4	11	74	22	59	67	1	2	28	1.10
2024189--2024274	26	3.2	27	79	12	79	66	0	4	29	1.12
2024218--2024266	19	2.5	19	86	3	71	71	0	2	26	0.97
2024183--2024275	31	3.3	27	77	15	82	66	1	4	27	1.17
2026331--2026380	20	2.5	20	84	9	66	66	0	2	32	1.03
2026480--2026563	26	3.2	25	81	8	78	51	17	7	23	1.70
2027117--2027162	24	1.9	24	82	8	58	36	4	10	47	1.58
2031620--2031652	10	3.4	10	91	4	50	81	0	18	0	0.68
2032355--2032392	20	2.0	20	94	5	69	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032355--2032399	17	2.9	16	81	12	58	82	0	17	0	0.68
2032358--2032409	22	2.4	22	87	3	70	80	1	17	0	0.80
2032893--2032966	23	3.0	24	79	13	71	77	1	18	2	0.97
2032899--2032967	14	4.7	14	78	18	61	76	1	20	1	0.94
2033991--2034065	22	3.5	22	87	1	98	30	20	21	28	1.98
2034530--2034585	26	2.1	28	86	6	80	33	19	14	32	1.92
2034529--2034708	63	2.9	63	75	8	174	36	16	15	31	1.90
2034955--2035038	32	2.6	33	77	9	91	38	14	11	35	1.83
2035118--2035167	22	2.3	22	86	6	66	38	24	16	22	1.93
2035280--2035344	19	3.5	19	73	12	64	81	12	4	1	0.91
2035704--2035790	7	12.6	7	67	27	53	67	0	2	29	1.03
2035704--2035800	50	2.0	48	81	15	112	68	0	3	28	1.05
2035718--2035799	16	4.9	16	76	10	69	65	0	3	30	1.09
2036181--2036225	6	7.5	6	89	0	54	71	0	26	2	0.98
2038400--2038451	14	3.7	14	94	0	86	46	28	11	13	1.78
2038659--2038698	8	5.2	8	82	17	50	72	0	0	27	0.85
2039029--2039074	24	1.9	24	86	8	67	39	4	8	47	1.54
2041006--2041113	3	36.7	3	85	3	94	65	10	0	24	1.23
2041004--2041089	35	2.5	35	88	0	118	65	10	0	24	1.24
2041955--2042011	30	1.9	30	88	0	87	59	8	5	26	1.48
2041987--2042045	20	3.0	20	89	0	82	54	10	6	28	1.59
2042069--2042152	42	2.0	43	83	2	107	50	10	10	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2042066--2042129	22	3.0	22	81	6	69	51	9	7	31	1.62
2042069--2042150	20	4.0	20	78	7	83	48	10	10	29	1.72
2041990--2042150	20	7.8	20	71	11	76	48	12	11	27	1.76
2041983--2042258	20	13.9	20	69	13	72	48	12	11	27	1.76
2043575--2043614	15	2.7	15	77	14	55	0	20	0	80	0.72
2043576--2043618	18	2.5	17	77	7	52	0	18	0	81	0.69
2043915--2043955	18	2.3	18	91	8	66	12	17	0	70	1.16
2043914--2043955	19	2.3	19	87	4	68	11	16	0	71	1.14
2043952--2043976	9	2.8	9	100	0	50	8	12	0	80	0.92
2050244--2050280	7	5.3	7	86	0	56	13	10	16	59	1.61
2050244--2050287	21	2.1	21	86	0	61	15	11	13	59	1.62
2057117--2057397	141	2.0	141	96	1	519	40	25	10	23	1.86
2058474--2058506	15	2.1	16	88	5	50	57	9	12	21	1.62
2058473--2058510	16	2.4	17	82	13	53	55	7	13	23	1.64
2059238--2059281	16	2.8	16	89	0	61	38	9	2	50	1.47
2059275--2059304	11	2.9	10	90	9	51	66	0	0	33	0.92
2059301--2059350	26	2.0	25	88	4	73	42	2	4	52	1.31
2059349--2059393	21	2.0	21	87	12	63	46	2	0	51	1.13
2059468--2059520	21	2.4	21	79	14	54	45	0	1	52	1.11
2059501--2059543	17	2.7	16	89	10	70	46	2	0	51	1.13
2059730--2059822	35	2.6	34	73	9	89	48	1	2	48	1.20
2062216--2062241	12	2.2	12	100	0	52	15	30	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2063822--2063876	19	2.8	20	83	5	76	36	3	12	47	1.59
2063827--2063887	19	3.0	21	83	11	58	37	6	11	44	1.67
2068461--2068750	7	43.7	7	68	17	77	20	2	34	43	1.66
2068480--2068526	19	2.6	18	82	3	58	21	4	34	40	1.73
2068480--2068735	20	12.5	20	71	14	84	21	2	33	42	1.67
2068690--2068749	20	3.0	20	78	4	66	25	3	33	38	1.72
2068668--2068749	13	6.2	13	74	14	69	23	2	31	42	1.67
2076950--2077015	24	2.7	25	76	9	73	30	7	1	60	1.33
2077711--2077743	17	1.9	17	88	11	50	51	3	0	45	1.16
2081035--2081160	43	2.9	43	100	0	252	31	7	16	44	1.75
2081863--2081911	20	2.5	20	83	3	64	48	30	0	20	1.50
2081896--2082044	7	22.5	6	68	22	52	48	34	1	14	1.53
2081876--2081945	27	2.6	26	80	10	79	50	38	0	11	1.39
2081895--2082071	13	12.9	13	67	16	72	47	36	2	14	1.56
2081903--2081959	20	2.8	20	87	10	80	50	40	1	7	1.40
2081895--2081953	27	2.2	27	84	6	75	50	40	0	8	1.33
2081902--2081994	20	4.6	20	72	15	75	48	36	2	12	1.54
2081896--2082044	20	7.2	20	69	12	59	48	34	1	14	1.53
2082143--2082183	20	2.2	20	86	8	59	14	17	14	53	1.73
2083035--2083104	21	3.3	21	79	2	77	54	4	2	38	1.35
2083057--2083111	20	2.8	20	83	5	58	58	3	1	36	1.26
2083044--2083111	20	3.3	20	73	8	57	57	4	2	35	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2083386--2083460	39	1.9	39	81	5	89	61	13	4	21	1.48
2083892--2083916	10	2.5	10	100	0	50	24	0	0	76	0.80
2084645--2084768	48	2.6	48	81	1	131	31	13	11	43	1.80
2084678--2084788	48	2.3	49	81	6	118	28	13	13	44	1.82
2085014--2085052	17	2.3	17	86	0	51	20	0	2	76	0.90
2085016--2085053	21	1.9	21	84	10	53	21	0	2	76	0.91
2087468--2087514	14	3.4	14	77	11	60	48	0	0	51	1.00
2087527--2087564	3	12.7	3	100	0	76	65	0	0	34	0.93
2088144--2088214	2	39.0	2	72	18	57	43	1	2	52	1.24
2088145--2088212	7	10.0	7	73	12	61	42	1	2	52	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64