genome.fa.s224.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  21  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2973786--2973840	20	2.8	20	91	5	85	50	14	7	27	1.69
2973935--2973996	24	2.6	24	85	7	81	53	9	3	33	1.50
2974136--2974176	21	1.9	22	90	5	66	58	9	2	29	1.43
2974127--2974255	53	2.4	53	86	0	186	57	11	3	27	1.51
2974278--2974400	20	6.3	20	72	10	103	52	10	5	31	1.59
2974324--2974368	18	2.4	19	81	11	56	46	11	4	37	1.60
2974387--2974430	16	2.8	16	78	0	52	54	13	6	25	1.63
2974412--2974466	20	2.8	19	84	10	76	49	10	7	32	1.65
2975079--2975114	18	2.0	18	88	0	54	83	2	0	13	0.76
2975371--2975628	43	6.0	42	80	5	259	36	19	15	29	1.92
2976562--2976611	18	2.8	18	78	0	55	40	22	16	22	1.91
2976681--2976805	36	3.5	36	78	7	121	42	16	11	30	1.82
2976954--2977003	25	2.0	26	84	4	66	32	18	14	36	1.90
2978320--2978402	14	5.8	14	75	18	64	12	14	1	72	1.19
2981531--2981603	18	3.9	18	68	7	56	50	9	5	34	1.58
2981630--2981691	24	2.6	24	87	7	90	53	11	3	32	1.53
2981818--2981859	21	2.0	22	90	4	68	59	9	2	28	1.41
2981812--2981937	53	2.4	53	94	0	216	59	8	2	29	1.40
2981855--2981944	26	3.4	26	68	24	71	58	8	3	28	1.44
2981957--2982099	20	7.2	20	81	9	134	51	9	6	32	1.59
2981967--2982118	20	7.7	20	79	10	118	50	9	6	32	1.61
2986391--2986453	28	2.4	26	87	10	85	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2995177--2995222	16	2.8	16	86	6	56	13	4	0	82	0.81
2995177--2995222	18	2.7	18	90	6	69	13	4	0	82	0.81
3001268--3001346	41	2.0	39	82	9	97	36	6	0	56	1.25
3002644--3002687	2	22.0	2	100	0	88	50	0	0	50	1.00
3004091--3004169	31	2.5	31	80	8	88	54	3	27	13	1.57
3020230--3020280	12	4.2	12	84	0	57	33	0	13	52	1.41
3021597--3021637	21	2.0	21	95	4	75	17	14	0	68	1.22
3025855--3026056	101	2.0	101	87	2	291	36	14	10	38	1.80
3029316--3029413	33	3.1	32	74	16	98	61	6	1	31	1.27
3029342--3029406	28	2.6	24	76	21	71	63	3	1	32	1.19
3029343--3029399	28	2.0	30	93	6	100	59	3	1	35	1.25
3029353--3029398	15	3.2	15	69	12	51	58	4	2	34	1.30
3029805--3029857	27	2.0	27	84	0	70	45	7	37	9	1.65
3034501--3034525	2	12.5	2	100	0	50	52	0	0	48	1.00
3035358--3035391	15	2.2	16	94	5	61	64	0	0	35	0.94
3041996--3042026	15	2.1	15	93	0	53	41	0	0	58	0.98
3048641--3048706	34	1.9	34	93	0	114	51	15	3	30	1.58
3049049--3049129	32	2.5	31	80	9	90	41	13	11	33	1.80
3053488--3053708	94	2.3	95	85	3	293	38	9	11	41	1.74
3054674--3054714	21	2.0	21	90	9	66	65	0	9	24	1.22
3057347--3057415	30	2.2	31	84	5	86	36	7	1	55	1.37
3057347--3057428	31	2.6	31	78	5	85	40	6	1	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057465--3057530	29	2.3	29	78	0	78	53	1	6	39	1.35
3057739--3057888	78	2.0	77	86	4	214	45	2	5	46	1.40
3058260--3058480	21	10.7	22	75	13	129	49	2	0	47	1.20
3058263--3058314	13	3.9	13	78	12	61	48	0	0	51	1.00
3058259--3058500	61	3.9	62	77	7	235	49	2	0	47	1.18
3058441--3058491	21	2.7	18	80	16	66	50	0	1	47	1.12
3058527--3058556	11	2.7	11	94	0	51	43	0	0	56	0.99
3058477--3058611	29	4.7	29	76	8	125	45	3	1	49	1.29
3058477--3058611	57	2.4	59	81	9	147	45	3	1	49	1.29
3058661--3058698	19	2.0	19	89	0	58	31	0	5	63	1.17
3058775--3058828	24	2.3	23	81	6	65	38	0	1	59	1.08
3063097--3063130	18	1.9	18	88	5	52	50	0	2	47	1.16
3063597--3063684	17	5.5	17	77	17	75	38	0	0	61	0.96
3063597--3063682	34	2.7	33	81	15	92	39	0	0	60	0.97
3069858--3069928	18	3.9	18	75	3	72	28	5	33	32	1.80
3071287--3071603	157	2.0	158	95	1	566	34	17	9	38	1.82
3071731--3071768	15	2.6	14	88	8	58	44	0	2	52	1.14
3072355--3072386	12	2.6	12	95	5	55	34	43	0	21	1.53
3074554--3074670	47	2.5	47	78	12	123	23	61	2	12	1.43
3074813--3074866	27	2.0	26	82	10	63	18	38	0	42	1.50
3075078--3075116	19	2.1	19	86	13	55	7	12	7	71	1.29
3076045--3076090	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3076478--3076513	16	2.2	16	95	0	63	41	19	19	19	1.90
3078044--3078166	3	43.3	3	74	19	77	32	4	3	60	1.32
3078076--3078122	10	4.8	10	94	2	78	38	0	6	55	1.26
3080754--3080813	12	4.9	12	81	2	66	43	21	13	21	1.87
3080756--3080809	24	2.2	24	87	9	74	44	22	12	20	1.85
3080766--3080826	26	2.4	25	83	5	70	45	21	11	21	1.82
3080921--3080960	20	2.0	20	85	9	55	40	22	15	22	1.91
3086082--3086122	9	4.4	9	84	6	55	80	2	14	2	0.92
3086085--3086129	20	2.3	20	92	3	74	77	2	17	2	0.97
3086818--3086866	25	2.0	25	95	0	89	85	2	12	0	0.68
3087317--3087370	20	2.7	20	86	8	74	70	1	20	7	1.21
3087391--3087434	23	2.0	22	86	4	61	79	2	18	0	0.83
3087403--3087446	18	2.3	19	88	7	63	75	4	20	0	0.98
3088361--3088412	22	2.4	22	86	0	68	36	25	15	23	1.93
3088636--3088777	32	4.5	32	75	8	128	38	16	15	30	1.89
3088636--3088845	95	2.2	96	79	8	232	39	17	14	29	1.89
3088933--3088996	22	2.9	22	83	4	76	31	17	23	28	1.97
3102583--3102843	88	2.9	89	91	0	425	43	10	3	42	1.56
3111524--3111579	19	3.1	18	78	19	62	71	3	1	23	1.11
3111525--3111569	21	2.1	21	84	8	56	75	2	2	20	1.01
3113254--3113293	20	2.0	21	90	5	64	55	2	0	42	1.13
3113240--3113293	21	2.9	19	80	17	60	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3115785--3115827	19	2.3	19	88	8	61	13	4	32	48	1.63
3115794--3115836	19	2.3	19	79	0	50	18	2	32	46	1.62
3115861--3115944	31	2.7	31	83	10	93	10	1	40	47	1.46
3115895--3116070	19	8.9	20	68	19	70	13	1	37	47	1.52
3115864--3116071	69	3.0	67	77	11	215	12	1	38	46	1.54
3116032--3116071	20	2.0	20	95	0	71	7	0	47	45	1.31
3117323--3117726	143	2.8	143	79	3	368	40	12	13	34	1.82
3118558--3118763	71	2.9	70	81	5	227	46	7	7	38	1.61
3118807--3119108	72	4.2	71	77	5	270	43	7	10	38	1.68
3119136--3119220	37	2.4	37	84	9	115	55	5	0	38	1.24
3121579--3121611	13	2.4	14	85	10	50	12	9	0	78	0.95
3125161--3125344	87	2.1	87	97	2	350	19	14	27	39	1.90
3126487--3126520	13	2.5	13	90	4	50	73	0	0	26	0.83
3126488--3126522	16	2.3	15	95	5	61	77	0	0	22	0.78
3126607--3126640	18	1.9	17	94	5	59	76	2	0	20	0.92
3126775--3126850	13	5.8	13	83	9	100	50	25	7	17	1.72
3137721--3137760	21	1.9	21	90	10	64	17	17	15	50	1.79
3148462--3148505	17	2.5	17	88	3	61	77	0	18	4	0.94
3148491--3148520	15	2.0	15	93	0	51	70	0	30	0	0.88
3149015--3149085	36	1.9	36	86	8	99	70	0	23	5	1.08
3150656--3150724	27	2.6	28	79	6	72	52	2	27	17	1.59
3151694--3151778	31	2.7	31	81	0	98	44	16	20	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3151789--3151949	51	3.3	50	79	6	159	31	14	11	42	1.82
3153226--3153319	19	4.9	19	67	5	55	18	5	34	42	1.73
3153279--3153355	38	2.1	37	85	2	100	19	1	37	41	1.60
3153267--3153351	19	4.5	19	67	5	64	20	1	38	40	1.60
3153587--3153630	13	3.3	13	81	15	54	27	0	27	45	1.54
3153587--3153630	7	6.6	7	84	10	56	27	0	27	45	1.54
3153587--3153630	20	2.2	20	87	0	61	27	0	27	45	1.54
3154586--3154624	21	1.9	20	89	5	60	74	2	10	12	1.17
3160284--3160321	20	1.9	19	89	5	58	31	2	0	65	1.06
3160330--3160382	9	5.7	9	80	6	61	24	0	3	71	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64