genome.fa.s224.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  45  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7155493--7155633	30	4.6	32	75	15	111	34	4	0	60	1.24
7155593--7155639	22	2.1	22	96	0	85	34	6	0	59	1.23
7156536--7156721	59	3.2	58	73	8	169	41	5	9	42	1.62
7156554--7156843	60	4.8	60	72	10	216	41	7	11	40	1.69
7156560--7156843	119	2.4	120	81	8	328	41	7	11	39	1.69
7156560--7156741	59	3.1	58	78	9	208	42	5	11	40	1.64
7161230--7161351	52	2.4	50	78	12	122	21	2	27	48	1.63
7161329--7161468	60	2.4	58	82	10	169	24	2	27	46	1.64
7161364--7161413	14	3.5	15	75	5	50	20	2	30	48	1.61
7161317--7161451	30	4.5	29	77	10	119	24	2	28	45	1.65
7161593--7161637	18	2.5	19	82	10	58	28	0	2	68	1.01
7161830--7161865	13	2.8	13	91	0	54	41	0	0	58	0.98
7163428--7163487	16	3.7	17	85	12	74	5	1	8	85	0.81
7163427--7163484	17	3.5	17	82	17	77	5	1	8	84	0.83
7163534--7163629	36	2.7	36	79	9	115	50	10	19	19	1.76
7163802--7163859	22	2.6	22	80	0	62	27	8	24	39	1.84
7163809--7163867	22	2.7	21	76	10	55	33	6	22	37	1.80
7163868--7164329	97	4.8	97	82	3	529	35	16	13	35	1.87
7163868--7164329	194	2.4	194	84	2	608	35	16	13	35	1.87
7164244--7164387	75	1.9	75	91	2	236	36	15	12	34	1.86
7164309--7164516	97	2.2	96	86	4	285	32	15	16	35	1.91
7164496--7164538	22	2.0	22	85	0	59	23	16	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7165304--7165366	19	3.2	20	68	6	58	74	3	0	22	0.96
7166227--7166288	3	20.7	3	100	0	124	67	0	0	32	0.91
7166721--7166988	116	2.3	117	83	7	330	42	18	22	17	1.89
7177866--7177905	16	2.4	17	91	4	64	17	5	0	77	0.94
7177895--7177953	26	2.2	27	78	3	66	47	1	5	45	1.34
7177989--7178029	14	2.8	15	88	3	57	82	2	0	14	0.76
7177988--7178029	8	5.0	8	81	18	50	80	2	0	16	0.81
7178364--7178388	13	1.9	13	100	0	50	60	24	0	16	1.36
7178428--7178457	12	2.5	12	94	0	51	76	6	0	16	0.99
7178871--7178934	3	21.3	3	100	0	128	67	0	0	32	0.91
7179023--7179077	27	2.1	26	89	3	83	30	25	29	14	1.95
7184185--7184225	20	2.0	21	90	4	66	31	7	0	60	1.24
7185842--7185882	15	2.7	15	88	0	55	19	2	24	53	1.57
7185886--7185990	44	2.4	43	79	3	113	22	0	26	49	1.56
7185944--7185975	14	2.3	14	100	0	64	18	0	21	59	1.38
7185966--7185999	15	2.2	16	89	5	52	26	2	26	44	1.69
7185951--7186099	8	19.2	8	66	15	73	26	0	24	47	1.57
7186021--7186063	22	2.0	22	86	9	61	25	0	27	46	1.53
7186106--7186180	14	5.2	14	72	12	62	20	0	28	52	1.47
7186104--7186180	30	2.7	28	81	4	100	20	0	28	50	1.48
7186304--7186370	3	22.3	3	80	11	75	28	0	4	67	1.10
7186564--7186599	13	2.8	13	91	0	54	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7188280--7188361	16	5.1	16	71	2	58	37	2	6	53	1.39
7188902--7188951	21	2.3	22	79	10	57	30	0	2	68	1.01
7195141--7195197	21	2.9	19	87	12	80	8	1	7	82	0.91
7195141--7195207	32	2.1	33	86	8	93	10	1	7	80	0.96
7195164--7195215	20	2.5	21	87	3	70	13	1	9	75	1.14
7195164--7195221	7	8.4	7	75	11	57	13	1	10	74	1.15
7195854--7195879	12	2.2	12	100	0	52	0	7	7	84	0.77
7205883--7205920	16	2.4	16	90	0	58	47	0	5	47	1.24
7206091--7206137	2	23.5	2	100	0	94	51	0	48	0	1.00
7206622--7206672	21	2.5	21	96	3	95	49	0	0	50	1.00
7206640--7206709	30	2.3	30	80	0	86	57	0	0	42	0.99
7211126--7211155	4	7.8	4	92	7	53	76	0	0	23	0.78
7211787--7211852	34	1.9	34	93	0	114	34	9	21	34	1.85
7214175--7214204	16	1.9	15	93	6	51	46	6	0	46	1.29
7217830--7217859	15	2.0	15	93	0	51	43	0	30	26	1.55
7226392--7226458	29	2.3	29	87	7	102	41	0	0	58	0.98
7226399--7226461	29	2.1	31	88	8	103	42	0	0	57	0.99
7226399--7226461	30	2.1	30	94	5	110	42	0	0	57	0.99
7229276--7229319	20	2.2	20	88	4	63	15	0	6	77	0.97
7229386--7229448	13	4.5	13	72	20	56	19	4	6	69	1.28
7229385--7229449	15	4.5	15	73	11	64	18	4	6	70	1.26
7229373--7229449	26	2.8	27	84	7	84	19	3	6	70	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7229409--7229460	15	3.4	17	75	22	60	26	5	7	59	1.48
7229384--7229460	30	2.7	30	84	9	92	23	5	6	64	1.37
7229577--7229618	21	2.0	21	90	4	68	33	4	9	52	1.55
7229614--7229664	14	3.6	14	86	2	66	35	7	7	49	1.61
7229786--7229827	21	2.0	22	95	4	77	28	4	9	57	1.51
7229762--7229917	53	3.0	53	84	4	210	30	6	8	54	1.56
7229785--7229837	20	2.6	21	85	11	74	28	5	11	54	1.58
7229899--7229971	28	2.6	29	78	8	80	26	1	12	60	1.40
7229980--7230022	18	2.4	18	84	0	59	30	4	11	53	1.57
7230001--7230048	25	2.0	25	95	4	89	31	4	14	50	1.62
7230196--7230246	17	2.7	20	79	14	63	37	0	9	52	1.34
7230140--7230246	20	5.6	19	72	14	69	33	2	12	51	1.54
7230321--7230353	16	2.2	16	89	10	52	24	6	15	54	1.63
7231433--7231466	16	2.2	15	89	5	50	64	0	35	0	0.94
7233517--7233551	9	3.9	9	88	11	54	88	2	0	8	0.61
7234181--7234215	13	2.7	13	86	0	52	71	0	0	28	0.86
7234242--7234285	21	2.1	21	83	8	54	75	2	2	20	1.03
7234433--7234491	22	2.8	21	78	12	59	67	0	5	27	1.11
7248423--7248624	43	4.7	43	81	2	181	29	12	14	43	1.83
7248460--7248624	86	1.9	86	87	2	242	28	13	14	43	1.84
7248471--7248664	86	2.3	86	81	4	223	26	13	16	42	1.86
7249455--7249494	19	2.0	20	85	4	55	20	2	25	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7254334--7254736	134	3.0	134	97	0	752	35	12	17	34	1.88
7257571--7257641	23	3.0	23	75	17	63	73	1	18	7	1.13
7257604--7257637	16	2.2	15	89	5	50	82	0	14	2	0.79
7258897--7259205	43	7.1	43	75	9	250	27	12	16	43	1.84
7258896--7259205	87	3.6	87	76	13	296	27	12	16	43	1.84
7259170--7259237	33	2.1	33	86	8	95	29	14	13	42	1.84
7260640--7260681	21	2.0	21	90	4	68	33	4	9	52	1.55
7260796--7260947	53	2.9	53	84	1	209	30	6	9	53	1.58
7260881--7260920	21	2.0	21	85	14	57	35	7	7	50	1.59
7261170--7261255	18	4.7	18	76	13	77	31	4	12	51	1.60
7261170--7261296	20	6.7	18	76	17	89	33	3	11	51	1.54
7261218--7261264	18	2.9	16	79	14	51	36	6	8	48	1.59
7261170--7261280	54	2.0	56	83	10	140	32	3	11	52	1.55
7265735--7265800	24	2.9	23	80	8	64	48	1	1	48	1.20
7265747--7265800	24	2.2	24	83	6	65	51	1	1	44	1.22
7265808--7265860	28	2.0	26	82	14	63	39	0	1	58	1.09
7265796--7265879	26	3.2	25	75	18	66	42	1	1	54	1.15
7265766--7265888	66	1.9	64	85	6	167	42	1	0	55	1.15
7266664--7266699	12	2.9	12	87	4	54	63	0	0	36	0.94
7266914--7266962	6	7.8	6	86	8	62	26	0	4	69	1.06
7266933--7266962	7	4.4	7	91	8	53	26	0	0	73	0.84
7266915--7266962	13	3.8	13	88	2	71	25	0	4	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7267160--7267214	2	27.5	2	88	0	83	43	3	0	52	1.18
7279990--7280076	46	1.9	44	87	0	111	40	12	20	26	1.88
7283016--7283068	24	2.2	23	80	9	61	47	3	0	49	1.19
7285905--7285956	19	2.6	19	74	17	52	46	0	0	53	1.00
7289362--7289408	23	2.1	23	84	4	60	63	17	2	17	1.40
7297397--7297428	14	2.1	16	88	11	50	87	0	12	0	0.54
7302556--7302772	87	2.4	88	84	4	267	35	21	11	31	1.90
7302556--7302777	90	2.5	87	82	7	259	34	21	12	31	1.90
7302947--7303141	88	2.2	88	82	1	221	36	20	11	31	1.88
7303186--7303250	24	2.7	24	85	2	85	27	20	12	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64