genome.fa.s224.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  31  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4824019--4824074	4	14.0	4	79	7	60	46	1	26	25	1.63
4825630--4825659	16	1.9	15	93	6	51	0	16	3	80	0.85
4827442--4827542	15	6.9	15	70	17	61	18	5	31	43	1.74
4827503--4827714	29	7.3	29	73	7	189	20	3	28	47	1.66
4827494--4827744	59	4.3	58	79	5	240	21	3	28	47	1.66
4827497--4827744	14	17.1	14	66	11	106	20	3	28	47	1.66
4827891--4827949	3	19.3	3	92	3	100	32	3	0	64	1.10
4846971--4847170	100	2.0	100	81	1	231	42	16	13	28	1.85
4850748--4850838	43	2.1	45	89	4	141	37	2	12	48	1.53
4851505--4851556	21	2.5	22	81	15	65	57	0	1	40	1.10
4851744--4851791	12	4.0	11	81	10	51	35	2	2	60	1.20
4852232--4852256	13	1.9	13	100	0	50	32	0	20	48	1.50
4853188--4853245	23	2.8	20	70	14	53	55	3	3	37	1.34
4853191--4853245	20	2.5	22	74	14	60	54	3	3	38	1.36
4855804--4855843	2	20.0	2	100	0	80	0	50	0	50	1.00
4862473--4862498	7	3.7	7	100	0	52	76	0	0	23	0.78
4862480--4862536	17	3.2	18	82	12	64	68	1	3	26	1.15
4862467--4862516	14	3.8	14	71	15	52	74	0	0	26	0.83
4866896--4866931	16	2.2	16	95	0	63	83	2	0	13	0.76
4867166--4867232	35	1.9	35	87	3	100	35	4	7	52	1.50
4869161--4869203	12	3.5	12	83	3	50	32	0	0	67	0.91
4870152--4870195	17	2.6	17	82	3	54	0	15	4	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4881508--4881566	20	3.0	20	94	0	100	18	30	28	22	1.97
4881606--4881630	13	1.9	13	100	0	50	12	0	0	88	0.53
4881857--4881890	11	2.9	12	86	8	52	20	0	0	79	0.73
4882195--4882267	31	2.4	31	86	4	103	21	24	24	28	1.99
4882318--4882362	19	2.4	19	92	0	72	24	31	22	22	1.99
4882606--4882649	15	2.9	15	86	0	52	9	0	4	86	0.70
4882604--4882632	1	29.0	1	100	0	58	0	0	0	100	0.00
4882665--4883123	156	2.9	161	93	2	759	28	14	17	39	1.89
4886757--4886829	15	4.7	15	81	10	67	76	0	16	6	0.99
4886763--4886813	15	3.3	16	86	8	70	80	0	15	3	0.86
4886778--4886837	8	7.8	8	83	7	61	81	0	13	5	0.84
4886786--4886839	16	3.5	15	85	7	72	79	0	14	5	0.90
4886778--4886836	15	3.9	14	85	12	64	81	0	13	5	0.85
4888031--4888335	82	3.7	81	92	3	481	22	17	20	38	1.93
4888031--4888332	40	7.4	40	86	8	412	23	17	20	38	1.93
4888031--4888332	122	2.5	123	88	4	470	23	17	20	38	1.93
4888490--4888529	20	2.0	20	90	0	62	20	30	27	22	1.98
4888564--4888588	13	1.9	13	100	0	50	12	0	0	88	0.53
4888620--4888656	14	2.8	14	88	8	51	43	0	5	51	1.24
4888817--4888850	11	2.9	12	86	8	52	20	0	0	79	0.73
4889166--4889238	31	2.4	31	88	4	103	23	26	23	27	2.00
4889300--4889344	19	2.4	19	92	0	72	24	31	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4889621--4889650	11	2.7	11	89	0	51	16	0	6	76	0.99
4889673--4890127	155	2.9	161	92	4	741	28	14	17	39	1.89
4894093--4894134	19	2.1	21	86	8	61	33	0	2	64	1.07
4894153--4894193	20	2.0	21	85	4	57	56	0	0	43	0.99
4894159--4894206	22	2.1	24	85	11	66	62	0	0	37	0.95
4910174--4910211	13	2.8	14	80	8	51	76	7	2	13	1.11
4913203--4913449	116	2.1	115	84	3	307	47	5	10	35	1.62
4913232--4913454	56	3.9	54	76	9	194	47	6	11	34	1.66
4916040--4916090	13	3.8	13	82	5	66	41	27	0	31	1.56
4916030--4916091	27	2.3	27	94	0	106	38	32	0	29	1.57
4917542--4917587	20	2.3	21	85	11	69	71	0	21	6	1.08
4917530--4917590	21	2.8	21	76	21	54	72	0	21	6	1.07
4917572--4917631	14	4.3	14	79	6	68	81	0	11	6	0.86
4917572--4917633	13	4.8	12	75	11	52	80	0	12	6	0.89
4918571--4918774	102	2.0	102	99	0	399	33	18	14	33	1.91
4918915--4918973	22	2.7	22	78	5	66	35	8	18	37	1.81
4919563--4919767	42	4.9	42	80	4	184	25	15	19	40	1.90
4919563--4919816	84	3.0	84	78	10	200	25	14	18	40	1.90
4919653--4919911	43	6.0	43	79	8	233	24	11	18	45	1.82
4919927--4919955	8	3.8	8	95	4	51	89	0	0	10	0.48
4922040--4922263	55	4.0	55	76	13	197	48	8	9	33	1.66
4922054--4922263	56	3.7	56	77	12	153	47	8	9	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4922367--4922402	13	2.7	13	91	4	54	8	8	2	80	0.99
4924663--4924702	21	2.0	21	90	5	64	10	32	5	52	1.56
4926175--4926239	3	22.0	3	87	9	98	66	3	0	30	1.07
4926507--4926552	20	2.2	21	84	3	58	60	2	2	34	1.21
4927720--4927753	16	2.1	16	88	0	50	76	5	5	11	1.14
4929573--4929604	12	2.7	12	100	0	64	56	15	12	15	1.68
4929668--4929721	23	2.2	26	83	9	69	72	1	1	24	1.05
4929648--4929700	28	2.0	28	85	14	76	77	5	0	16	0.96
4929858--4929899	2	21.0	2	100	0	84	50	0	0	50	1.00
4930163--4930202	2	20.0	2	100	0	80	50	0	0	50	1.00
4929703--4930312	303	2.0	303	95	1	1089	53	11	11	23	1.68
4930793--4930830	19	2.0	20	94	5	69	73	15	10	0	1.09
4931427--4931477	3	17.3	3	95	4	95	31	0	0	68	0.90
4931849--4931888	20	2.0	20	90	0	62	42	22	17	17	1.89
4932112--4932152	20	2.1	19	86	13	57	73	0	2	24	0.96
4935536--4935577	17	2.4	18	80	4	50	40	4	28	26	1.76
4943389--4943486	35	2.8	35	82	1	117	18	21	13	46	1.82
4943623--4943743	35	3.4	34	71	6	80	22	23	9	43	1.83
4943687--4943823	70	2.0	70	80	2	159	19	18	13	47	1.82
4944678--4944707	14	2.2	13	94	5	51	86	10	3	0	0.67
4945579--4945656	3	26.7	3	89	5	124	32	0	2	65	1.06
4946033--4946087	26	2.2	26	90	3	85	52	16	7	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4946152--4946198	20	2.4	19	86	6	67	40	25	14	19	1.90
4950056--4950093	18	2.1	18	90	0	58	36	21	2	39	1.67
4953938--4954125	93	2.0	93	94	0	331	43	22	10	23	1.84
4966723--4966777	27	2.0	27	86	6	76	30	25	21	21	1.98
4972081--4972109	14	2.0	15	93	6	51	20	13	10	55	1.68
4972997--4973055	30	2.0	30	100	0	118	33	16	6	42	1.75
4974638--4974700	29	2.2	28	83	11	74	26	4	3	65	1.28
4974738--4974765	3	9.3	3	100	0	56	67	0	0	32	0.91
4974761--4974796	4	9.2	4	93	6	65	77	0	0	22	0.76
4975399--4975460	21	2.9	22	84	13	76	51	32	1	14	1.52
4975406--4975468	21	3.0	22	74	21	62	52	31	1	14	1.51
4982325--4982349	12	2.1	12	100	0	50	20	8	24	48	1.76
4983044--4983181	61	2.2	61	83	8	165	42	16	1	39	1.57
4983107--4983162	25	2.2	26	83	3	69	41	16	0	42	1.48
4987220--4987323	55	1.9	55	91	0	172	36	24	2	36	1.70
4988587--4988618	2	16.5	2	93	6	57	53	0	0	46	1.00
4991471--4991520	16	2.9	18	70	11	50	44	12	12	32	1.78
4991473--4991524	18	3.0	18	72	11	54	40	11	13	34	1.81
4991821--4991956	73	1.9	72	82	1	166	40	9	8	41	1.67
4991909--4992074	72	2.3	72	80	5	187	39	8	7	44	1.62
4992267--4992431	72	2.3	71	83	8	217	40	9	6	43	1.62
4992267--4992451	72	2.6	70	80	11	214	40	9	6	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5003099--5003207	53	2.1	53	82	6	132	24	0	24	49	1.56
5004535--5004576	22	1.9	22	85	9	59	73	2	14	9	1.18
5006016--5006040	13	1.9	13	100	0	50	8	16	4	72	1.24
5010384--5010408	7	3.6	7	100	0	50	0	12	0	88	0.53
5010448--5010472	13	1.9	13	100	0	50	8	8	12	72	1.29
5011542--5011622	33	2.4	33	79	2	90	33	7	18	40	1.78
5013049--5013342	160	1.8	162	82	5	382	42	14	9	32	1.79
5013132--5013423	162	1.8	163	84	4	412	44	13	9	31	1.77
5021065--5021130	28	2.4	28	92	2	107	22	3	25	48	1.65
5021111--5021200	12	7.3	12	74	12	58	20	5	27	46	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64