genome.fa.s224.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  28  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4271995--4272306	43	7.3	44	81	6	288	25	15	20	39	1.91
4272478--4272569	8	12.6	7	73	14	53	22	1	4	71	1.10
4272482--4272511	13	2.3	13	94	0	51	16	0	6	76	0.99
4272510--4272644	4	33.5	4	69	16	75	28	2	2	65	1.21
4272579--4272626	22	2.2	22	77	3	53	31	2	4	62	1.26
4272574--4272683	40	2.9	39	69	11	104	30	5	2	61	1.32
4272554--4272643	32	2.9	30	80	8	83	30	3	2	64	1.22
4272651--4272729	42	1.9	40	84	5	104	25	7	2	64	1.33
4273534--4273579	5	9.8	5	86	9	62	17	0	0	82	0.67
4273534--4273579	23	1.9	25	91	8	78	17	0	0	82	0.67
4273534--4273584	18	2.7	19	85	11	70	17	1	0	80	0.81
4273596--4273813	58	3.7	59	83	5	280	44	5	12	37	1.67
4283357--4283408	3	17.3	3	100	0	104	67	0	0	32	0.91
4289383--4289587	104	2.0	104	93	1	349	33	12	16	38	1.85
4297455--4297485	12	2.6	12	100	0	62	32	25	16	25	1.96
4298218--4299006	356	2.2	351	83	5	959	35	13	14	35	1.86
4307429--4307460	3	10.7	3	100	0	64	68	0	0	31	0.90
4307853--4307885	3	11.0	3	93	0	57	69	0	0	30	0.88
4308763--4308794	2	16.0	2	93	0	55	46	0	0	53	1.00
4314287--4314329	2	21.5	2	95	0	77	48	2	0	48	1.14
4315779--4315819	21	1.9	22	95	5	75	46	0	0	53	1.00
4317057--4317190	16	8.0	16	67	15	56	49	2	2	45	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4317067--4317160	18	5.4	18	70	16	56	51	3	2	43	1.29
4317181--4317323	23	6.4	23	70	22	85	43	0	0	55	1.04
4317161--4317355	49	4.1	49	73	17	144	43	1	0	55	1.10
4317189--4317348	41	4.0	40	74	15	127	43	0	0	56	1.04
4317908--4317956	25	2.0	25	92	8	82	55	0	0	44	0.99
4321318--4321367	23	2.2	23	92	7	84	48	6	0	46	1.27
4333447--4333499	22	2.4	22	96	0	97	41	3	0	54	1.18
4335389--4335422	5	6.8	5	93	0	50	88	0	11	0	0.52
4346917--4346971	22	2.4	23	78	3	67	29	16	5	49	1.68
4348450--4349135	340	2.0	340	99	0	1363	29	15	17	38	1.90
4354626--4354675	18	2.7	18	76	17	57	48	12	16	24	1.79
4354627--4354662	19	1.9	19	88	5	56	47	11	16	25	1.79
4359696--4359728	17	1.9	17	93	0	57	33	9	6	51	1.58
4362945--4362969	13	1.9	13	100	0	50	12	8	0	80	0.92
4362939--4362986	21	2.2	21	78	10	53	16	10	2	70	1.24
4363307--4363350	20	2.1	22	87	8	65	9	18	0	72	1.10
4366190--4366297	37	2.9	37	68	6	85	29	10	22	37	1.87
4367351--4367496	25	5.8	25	88	0	202	52	8	11	28	1.66
4367336--4367505	75	2.3	74	81	5	209	52	7	11	28	1.64
4372980--4373044	33	2.0	33	84	6	87	16	3	35	44	1.64
4373025--4373053	14	2.1	14	93	6	51	13	0	27	58	1.36
4372986--4373114	51	2.5	52	79	9	129	18	2	33	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4373089--4373129	19	2.2	19	86	0	55	19	0	31	48	1.49
4373199--4373250	24	2.2	24	82	0	59	23	3	28	44	1.71
4374743--4374779	18	2.1	18	90	10	58	51	10	0	37	1.37
4375367--4375489	57	2.2	57	95	0	219	19	18	8	53	1.69
4375746--4376211	230	2.0	233	95	2	848	44	16	13	25	1.84
4376877--4376950	39	1.9	38	89	5	114	72	9	10	6	1.26
4376930--4376993	24	2.5	26	80	19	73	68	6	14	10	1.37
4378276--4378340	3	21.7	3	100	0	130	66	0	0	33	0.92
4384322--4384361	21	2.0	21	90	5	64	62	0	25	12	1.30
4384346--4384406	21	3.0	21	77	20	76	70	0	24	4	1.07
4384406--4384461	23	2.7	20	81	13	60	82	3	14	0	0.81
4384409--4384457	22	2.2	22	88	3	71	81	4	14	0	0.83
4384396--4384461	26	2.5	26	88	9	91	81	3	15	0	0.80
4385552--4385718	32	5.2	32	76	7	149	34	16	14	34	1.89
4386010--4386096	34	2.6	34	82	10	90	24	20	10	44	1.82
4388540--4388569	3	10.0	3	100	0	60	66	0	0	33	0.92
4388710--4388761	20	2.7	20	87	3	70	50	25	7	17	1.72
4396735--4396771	16	2.4	16	86	8	51	35	2	0	62	1.10
4397239--4397282	20	2.2	20	84	4	54	40	6	9	43	1.63
4397244--4397290	12	4.0	12	83	2	60	38	4	12	44	1.62
4407764--4407888	48	2.6	48	83	2	155	51	16	7	25	1.69
4407817--4407975	43	3.6	43	79	6	151	46	15	10	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4407814--4408067	133	1.9	133	80	6	300	44	14	11	29	1.80
4408792--4408831	11	3.3	12	86	10	55	20	0	2	77	0.88
4408798--4408831	17	2.0	17	94	0	59	20	0	0	79	0.73
4408815--4408909	28	3.5	26	82	16	106	30	4	0	65	1.12
4408792--4408831	6	6.7	6	85	8	55	20	0	2	77	0.88
4408849--4408911	22	2.6	24	87	9	85	28	6	0	65	1.17
4408792--4408888	14	7.2	13	73	18	60	27	3	1	68	1.11
4408836--4408911	26	2.8	26	77	21	77	30	5	0	64	1.15
4409686--4409732	5	9.4	5	82	13	53	14	2	0	82	0.75
4409682--4409733	24	2.1	25	89	10	81	13	3	0	82	0.80
4409691--4409736	19	2.5	19	89	3	67	15	2	0	82	0.76
4409761--4409966	60	3.5	60	90	4	321	48	3	9	38	1.52
4409915--4409958	15	2.9	14	90	10	61	52	2	2	43	1.26
4415927--4415958	14	2.3	14	100	0	64	34	18	21	25	1.96
4417305--4419464	540	4.0	540	89	1	3204	38	13	19	28	1.90
4423278--4423502	40	5.4	40	77	12	190	24	12	16	48	1.79
4423278--4423549	82	3.3	82	79	12	263	25	11	16	47	1.80
4423429--4423576	41	3.6	41	80	12	155	25	13	18	42	1.87
4423764--4423882	26	4.7	26	77	17	115	29	4	0	65	1.17
4423770--4423875	22	4.6	22	80	12	106	31	3	0	64	1.18
4423770--4423875	48	2.3	46	88	4	151	31	3	0	64	1.18
4424575--4424663	3	29.7	3	70	17	60	26	1	5	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4424625--4424666	17	2.4	17	88	11	59	19	2	2	76	1.01
4424846--4424881	15	2.5	14	90	4	54	41	0	0	58	0.98
4424673--4424900	58	4.0	58	88	5	322	44	4	10	39	1.61
4428239--4428271	11	3.0	11	83	16	50	21	51	9	18	1.73
4428927--4428991	31	2.1	31	88	0	94	21	20	13	44	1.86
4435453--4435497	21	2.1	21	83	0	54	51	2	4	42	1.34
4438219--4438333	59	2.0	58	81	8	135	32	19	0	47	1.55
4439725--4439805	40	2.0	40	92	4	137	55	17	3	23	1.58
4441156--4441352	113	1.8	109	85	11	282	63	4	4	28	1.31
4441262--4441289	13	2.2	13	100	0	56	57	0	0	42	0.99
4441268--4441328	25	2.6	25	79	7	65	60	1	1	36	1.16
4441380--4441434	22	2.5	20	78	18	56	38	1	0	60	1.08
4441486--4441523	2	19.0	2	100	0	76	50	0	0	50	1.00
4441744--4441782	2	19.5	2	94	0	69	2	48	0	48	1.15
4443781--4443812	16	2.1	15	94	5	55	21	3	0	75	0.95
4444075--4444118	21	2.2	20	83	4	52	47	18	9	25	1.77
4457748--4457804	22	2.6	22	88	2	80	40	10	5	43	1.62
4457892--4457924	17	1.9	17	93	0	57	75	3	3	18	1.06
4459635--4459662	13	2.2	13	100	0	56	53	17	7	21	1.67
4461362--4461399	20	1.9	20	88	0	58	31	13	28	26	1.93
4463636--4463676	19	2.2	19	90	0	64	17	2	31	48	1.60
4463701--4463817	30	3.9	30	71	16	91	17	2	37	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4463714--4463817	19	5.3	19	77	15	79	18	2	36	42	1.65
4463723--4463803	43	1.9	42	89	2	126	18	3	34	43	1.68
4463827--4463908	37	2.3	35	82	6	92	18	1	30	50	1.55
4466365--4466667	143	2.1	141	81	5	342	42	14	10	32	1.80
4467590--4467627	15	2.6	15	87	4	51	21	5	2	71	1.19
4467572--4467830	58	4.4	59	85	6	298	30	12	8	49	1.69
4467931--4467958	3	9.3	3	100	0	56	67	0	0	32	0.91
4469109--4469280	60	2.9	60	81	0	227	30	20	15	33	1.94
4469311--4469430	64	1.9	64	85	0	168	31	19	14	35	1.91
4469632--4469683	25	2.1	25	82	10	63	15	9	3	71	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64