genome.fa.s224.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  52  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8289829--8290174	126	2.7	127	85	2	446	25	16	13	44	1.84
8290745--8290776	12	2.7	12	100	0	64	28	0	12	59	1.34
8290732--8290776	13	3.5	13	84	6	56	28	2	11	57	1.45
8290792--8290837	19	2.5	19	82	3	58	26	10	13	50	1.74
8291278--8291318	13	3.2	13	86	10	50	14	2	4	78	1.03
8291557--8291586	8	3.8	8	90	0	51	76	3	0	20	0.92
8292519--8292887	202	1.8	203	84	3	501	41	8	11	37	1.73
8294515--8294606	39	2.3	39	88	1	130	48	19	8	22	1.76
8295970--8296603	234	2.7	233	82	2	768	45	9	8	35	1.68
8296429--8296809	203	1.9	203	80	6	448	43	10	9	37	1.72
8300866--8300965	22	4.5	22	78	9	96	51	1	9	39	1.40
8300867--8301144	22	12.8	21	69	10	94	50	3	8	37	1.52
8300867--8301144	44	6.4	44	69	6	136	50	3	8	37	1.52
8301174--8301245	22	3.3	22	80	7	67	47	5	12	34	1.65
8301194--8301255	22	2.8	22	80	4	54	45	3	12	38	1.59
8301449--8301523	22	3.5	20	75	15	69	49	2	8	40	1.46
8301438--8301523	44	2.0	44	86	4	120	50	4	6	38	1.50
8301535--8301619	44	1.9	44	85	0	116	44	9	7	38	1.64
8301579--8301635	22	2.7	22	75	17	59	50	8	3	36	1.50
8301635--8301696	22	2.8	22	87	0	79	50	8	4	37	1.54
8302156--8302216	21	2.8	23	82	12	83	44	0	11	44	1.40
8302061--8302221	66	2.4	66	75	10	168	45	1	9	42	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8302263--8302296	16	2.2	16	89	5	52	50	5	5	38	1.51
8302431--8302515	44	1.9	44	85	4	118	44	4	9	41	1.57
8302638--8302683	22	2.1	22	87	0	65	41	6	10	41	1.66
8303090--8303136	21	2.2	21	88	0	67	55	4	6	34	1.45
8303111--8303163	27	2.0	27	88	0	79	54	7	1	35	1.40
8303135--8303166	10	3.1	10	95	4	55	53	9	0	37	1.34
8311700--8311755	27	2.1	27	96	0	103	21	21	3	53	1.61
8314552--8314582	16	1.9	16	93	0	53	19	0	35	45	1.51
8314568--8314607	20	2.0	20	90	0	62	15	0	32	52	1.43
8314539--8314611	36	2.1	36	87	7	105	16	0	35	47	1.47
8314581--8314688	16	7.1	15	83	11	130	18	0	32	48	1.55
8314581--8314688	31	3.5	30	85	9	130	18	0	32	48	1.55
8314581--8314689	47	2.3	47	86	9	152	19	0	32	47	1.56
8315972--8316000	10	2.9	10	100	0	58	10	10	51	27	1.68
8316166--8316196	12	2.6	12	94	0	53	29	0	9	61	1.28
8316413--8316470	23	2.5	23	82	0	71	36	24	13	25	1.92
8316488--8316723	88	2.7	88	91	0	364	40	19	22	18	1.92
8316737--8316777	20	2.0	21	95	4	75	31	19	19	29	1.96
8316957--8317006	23	2.2	23	85	3	66	34	20	28	18	1.95
8316782--8316988	110	1.9	109	82	1	261	39	17	20	22	1.92
8316967--8317018	23	2.3	23	89	0	86	32	23	21	23	1.98
8316858--8317266	133	3.1	133	84	2	507	37	18	20	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8317084--8317150	23	3.0	23	86	2	91	28	22	22	26	1.99
8317212--8317271	22	2.7	22	84	2	75	41	20	13	25	1.88
8317224--8317271	23	2.1	22	88	3	69	43	20	12	22	1.86
8317297--8317353	22	2.5	23	88	5	89	33	24	19	22	1.97
8317206--8317406	87	2.3	87	89	0	303	37	20	18	23	1.94
8317385--8317633	110	2.3	110	84	4	306	37	17	20	24	1.93
8317589--8317653	23	2.9	22	82	13	87	32	21	21	24	1.98
8317391--8317847	243	1.9	243	84	3	625	38	17	19	24	1.93
8317479--8317766	133	2.2	132	87	1	416	37	19	19	24	1.94
8317630--8317836	110	1.9	110	91	2	344	41	18	16	23	1.90
8317770--8318029	88	3.0	87	87	1	394	42	19	17	20	1.90
8318006--8318339	122	2.7	122	89	0	517	36	14	14	34	1.87
8318388--8318495	41	2.6	41	85	11	159	29	14	21	34	1.93
8320211--8320247	7	5.6	7	87	6	51	2	0	8	89	0.58
8320211--8320250	19	2.1	19	90	9	64	2	0	7	90	0.55
8320811--8320844	18	1.9	18	88	5	52	5	5	0	88	0.64
8326815--8326845	16	1.9	16	93	0	53	19	0	35	45	1.51
8326833--8326865	14	2.3	15	89	5	50	9	0	36	54	1.32
8326848--8326885	20	1.9	20	84	10	51	15	0	31	52	1.43
8326859--8326973	16	7.5	15	78	11	117	17	0	32	50	1.46
8327382--8327420	12	3.3	12	82	3	53	82	0	0	17	0.68
8328057--8328094	20	2.0	20	94	5	69	0	5	21	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8328356--8328413	8	7.0	8	74	14	55	20	0	1	77	0.86
8333393--8333459	29	2.2	31	84	12	86	56	25	5	11	1.57
8334580--8334628	20	2.5	19	80	6	62	42	2	2	53	1.24
8334718--8334793	34	2.2	34	83	2	98	32	1	2	63	1.17
8336109--8336138	9	3.2	9	95	4	51	63	0	0	36	0.95
8336111--8336140	10	3.1	10	95	4	53	63	0	0	36	0.95
8336925--8336949	2	12.5	2	100	0	50	48	0	0	52	1.00
8342111--8342393	59	4.9	57	81	7	272	34	13	7	44	1.71
8342111--8342388	118	2.4	113	84	5	335	35	13	7	43	1.71
8342281--8342468	97	1.9	98	96	2	351	37	15	6	40	1.73
8342340--8342419	38	2.0	40	81	11	94	35	15	3	46	1.63
8342438--8342765	57	5.7	57	81	7	353	37	13	5	43	1.67
8342381--8342767	114	3.4	114	81	8	480	36	13	6	43	1.69
8342780--8342869	26	3.6	25	75	11	85	77	3	4	14	1.05
8342780--8342877	6	16.0	6	76	15	85	77	3	4	15	1.04
8342780--8342877	17	5.7	17	76	12	85	77	3	4	15	1.04
8342780--8342877	50	2.0	48	86	7	135	77	3	4	15	1.04
8342891--8342932	22	2.0	22	81	13	52	64	2	0	33	1.07
8343758--8343809	21	2.5	20	87	9	68	63	7	5	23	1.43
8343772--8343811	11	3.5	12	75	25	50	62	5	5	27	1.37
8343749--8343811	22	2.9	21	86	9	74	65	6	4	23	1.36
8343927--8344015	11	8.0	10	77	13	61	77	2	3	16	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8343935--8344015	17	4.9	16	75	21	69	77	2	2	17	0.98
8343915--8344017	36	2.9	37	74	8	97	75	2	2	18	1.05
8343936--8344019	42	2.0	41	81	6	98	76	2	3	17	1.04
8344192--8344363	42	4.1	42	88	0	229	36	22	18	23	1.95
8345380--8345421	9	5.0	9	82	11	54	14	7	0	78	0.95
8355798--8356297	58	8.7	57	79	6	481	36	13	6	44	1.70
8355798--8356318	173	3.0	173	82	6	646	36	12	7	43	1.70
8356315--8356416	5	20.2	5	69	25	56	77	1	4	15	1.03
8356315--8356374	7	8.1	7	74	20	52	80	1	3	15	0.93
8356315--8356416	11	8.9	12	72	13	65	77	1	4	15	1.03
8356315--8356408	32	2.8	31	81	16	84	78	2	5	13	1.01
8356315--8356402	44	2.0	42	82	8	106	79	2	4	13	0.98
8356315--8356402	37	2.4	37	83	10	103	79	2	4	13	0.98
8358095--8358176	41	2.0	41	97	0	155	42	9	20	26	1.83
8358679--8358739	28	2.2	28	94	5	106	34	3	3	59	1.30
8358679--8358755	28	2.8	28	88	4	93	35	2	5	57	1.35
8364873--8364914	20	2.1	20	86	8	59	50	0	7	42	1.30
8366179--8366246	7	9.6	7	81	9	66	14	2	2	79	0.97
8366183--8366215	12	2.6	13	85	9	50	18	0	0	81	0.68
8366968--8367006	17	2.4	16	87	8	53	43	2	5	48	1.38
8367170--8367272	42	2.4	43	80	13	124	44	0	0	53	1.13
8367376--8367412	20	2.0	20	89	10	60	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8371835--8371872	19	2.0	20	84	5	51	39	0	2	57	1.12
8373685--8373911	22	10.4	22	74	7	158	37	11	8	43	1.71
8373920--8374014	22	4.3	22	81	9	86	41	12	3	43	1.58
8374318--8374369	22	2.4	22	75	12	52	38	9	5	46	1.61
8374770--8374813	22	2.0	22	81	0	52	25	11	15	47	1.79
8374918--8375294	22	17.4	22	69	12	145	36	7	5	49	1.56
8374933--8374974	19	2.2	19	91	0	66	42	0	2	54	1.13
8375451--8375523	22	3.3	22	69	7	58	35	5	6	52	1.52
8375526--8375612	22	4.0	22	82	8	97	40	12	2	44	1.55
8375522--8375610	44	2.0	44	82	4	108	40	12	2	44	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64