genome.fa.s224.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  43  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6781345--6781428	24	3.7	23	79	7	75	33	2	5	58	1.35
6782442--6782514	38	1.9	38	83	5	94	24	5	2	67	1.26
6782592--6782626	2	18.0	2	94	5	63	51	0	0	48	1.00
6784198--6784228	16	1.9	16	93	0	53	58	12	3	25	1.50
6784971--6785013	21	2.0	21	90	0	68	58	0	0	41	0.98
6789442--6789528	18	4.9	18	70	9	63	18	3	11	66	1.37
6789475--6789528	19	3.2	16	73	16	56	20	0	11	68	1.19
6789618--6789667	23	2.2	23	86	10	68	30	8	0	62	1.24
6790251--6790280	14	2.1	15	93	6	53	73	0	0	26	0.84
6790587--6790629	23	2.0	22	90	9	70	32	0	2	65	1.06
6800097--6800164	23	3.0	23	66	10	59	33	4	14	47	1.65
6800448--6800515	17	4.0	16	74	12	64	36	17	5	39	1.74
6800462--6800537	17	4.4	17	81	1	71	36	13	7	42	1.73
6800686--6800728	16	2.6	17	88	3	70	41	4	11	41	1.62
6801336--6801437	6	16.7	6	72	9	64	30	1	5	61	1.30
6801338--6801421	24	3.7	23	79	7	75	33	2	5	58	1.35
6804947--6804989	21	2.0	21	90	0	68	58	0	0	41	0.98
6809209--6809261	19	2.8	19	76	18	56	20	9	11	58	1.60
6809434--6809520	18	4.9	18	70	9	63	18	3	11	66	1.37
6809467--6809520	19	3.2	16	73	16	56	20	0	11	68	1.19
6809610--6809657	22	2.2	22	85	10	64	31	8	0	60	1.26
6810248--6810277	14	2.1	15	93	6	53	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6815538--6815570	2	16.5	2	100	0	66	51	0	0	48	1.00
6815568--6815595	4	7.0	4	100	0	56	50	0	25	25	1.50
6821227--6821272	24	1.9	24	90	0	74	67	2	2	28	1.14
6829527--6829563	11	3.5	11	85	14	51	70	0	2	27	1.01
6834255--6834290	6	5.8	6	90	6	54	36	63	0	0	0.94
6842524--6842631	7	15.0	7	78	7	76	19	1	2	75	1.01
6842522--6842623	20	5.1	20	75	17	95	19	1	2	75	1.03
6842524--6842631	33	3.2	32	75	20	96	19	1	2	75	1.01
6842527--6842589	8	7.9	8	77	18	60	20	0	1	77	0.85
6842522--6842608	41	2.2	39	80	13	106	18	2	2	77	0.99
6842536--6842621	34	2.5	33	78	12	84	18	2	3	75	1.05
6842604--6842798	4	49.8	4	66	16	54	30	4	2	62	1.29
6842613--6842716	27	3.8	28	74	15	92	30	2	1	64	1.19
6842610--6842737	30	4.6	27	71	25	97	30	3	2	63	1.25
6842709--6842778	22	3.3	21	74	8	70	32	7	2	57	1.41
6842697--6842778	42	2.0	42	90	0	128	34	7	2	56	1.40
6842748--6842853	43	2.5	43	80	11	121	28	5	2	63	1.31
6842748--6842861	42	2.7	41	82	9	124	28	6	2	63	1.32
6842758--6842864	21	5.0	21	75	14	94	28	6	2	62	1.34
6843743--6843799	5	11.8	5	75	20	59	15	3	0	80	0.84
6843744--6843804	15	4.3	14	85	10	88	16	4	0	78	0.91
6843826--6843915	29	3.2	27	68	27	78	37	4	16	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6843820--6843975	58	2.7	57	89	3	240	40	7	14	38	1.73
6855449--6855691	42	5.7	42	83	7	262	25	14	20	39	1.91
6855874--6856040	7	23.0	7	70	14	72	22	2	2	71	1.11
6855873--6855933	27	2.3	27	82	8	79	21	1	1	75	0.98
6855874--6855945	20	3.5	20	77	9	72	18	2	1	77	0.96
6855879--6855955	41	1.9	41	81	7	95	16	3	2	76	1.05
6855874--6855977	47	2.1	49	81	16	119	19	2	2	75	1.06
6855954--6856126	4	44.5	4	69	15	71	30	3	2	63	1.25
6855954--6856095	63	2.3	62	80	10	164	29	3	2	64	1.25
6855954--6856118	38	4.3	37	74	17	115	30	3	3	63	1.24
6856116--6856199	20	4.0	21	74	10	73	30	5	2	60	1.33
6857096--6857133	5	7.8	5	83	16	53	18	0	0	81	0.69
6857089--6857123	16	2.1	17	94	5	63	20	0	0	80	0.72
6857086--6857133	24	2.0	24	92	4	80	20	0	0	79	0.74
6857151--6857477	58	5.7	57	87	5	437	44	7	13	35	1.71
6857191--6857282	28	3.2	28	65	23	75	43	6	13	36	1.69
6857150--6857477	115	2.9	112	87	6	453	44	7	13	35	1.71
6859076--6859193	40	3.0	40	78	2	103	44	7	11	35	1.70
6860753--6860792	17	2.4	17	91	0	62	65	17	2	15	1.39
6860817--6860920	54	1.9	54	84	0	136	37	19	13	29	1.90
6864185--6864334	57	2.6	57	84	3	194	26	32	3	38	1.73
6865862--6865901	2	20.0	2	94	0	71	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6869274--6869312	16	2.3	17	86	8	53	61	0	2	35	1.10
6876131--6876161	2	15.5	2	100	0	62	51	0	0	48	1.00
6879867--6879891	2	12.5	2	100	0	50	52	0	0	48	1.00
6883941--6883997	4	13.8	4	75	14	53	21	5	1	71	1.14
6883944--6883998	21	2.6	21	77	8	58	21	5	1	70	1.16
6886277--6886301	3	8.3	3	100	0	50	32	32	0	36	1.58
6886880--6886950	36	2.0	36	97	0	133	54	0	2	42	1.14
6886891--6886953	19	3.4	18	72	24	60	53	0	3	42	1.16
6886884--6886960	36	2.1	36	90	0	118	51	0	3	44	1.19
6888065--6888234	10	16.9	10	69	12	71	57	5	1	35	1.30
6888083--6888247	10	16.9	9	72	16	80	56	5	1	36	1.33
6888384--6888422	18	2.2	18	90	4	62	69	0	0	30	0.89
6888383--6888424	17	2.3	19	84	12	61	69	0	0	30	0.89
6888371--6888435	28	2.3	28	81	5	78	63	0	3	33	1.10
6888629--6888671	21	2.0	21	86	0	59	72	2	2	23	1.08
6888711--6888765	19	2.9	18	84	7	65	38	1	1	58	1.20
6888960--6889198	9	25.0	9	70	16	117	34	2	5	57	1.35
6888958--6889354	10	40.1	10	64	14	67	33	2	6	58	1.35
6888908--6889099	19	10.3	17	73	13	96	34	3	5	56	1.39
6889019--6889170	51	3.1	49	76	12	125	31	2	7	58	1.39
6889116--6889206	21	4.6	20	72	12	62	34	1	6	58	1.31
6889287--6889313	13	2.1	13	100	0	54	22	0	7	70	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6889270--6889332	31	2.0	31	84	6	83	30	0	9	60	1.28
6889299--6889342	19	2.3	19	92	0	70	27	0	6	65	1.17
6889226--6889341	50	2.3	50	77	2	126	34	0	6	59	1.22
6891120--6891177	22	2.7	22	74	12	57	43	0	3	53	1.17
6892008--6892051	21	2.0	22	82	4	54	54	2	6	36	1.40
6892320--6892344	11	2.3	11	100	0	50	84	0	0	16	0.63
6892563--6892623	30	2.1	30	90	6	99	63	0	0	36	0.94
6896030--6896070	14	2.9	15	82	10	59	63	0	7	29	1.21
6897272--6897328	3	19.0	3	88	0	78	64	5	0	29	1.15
6899072--6899334	134	2.0	134	100	0	526	34	20	13	32	1.91
6901434--6901577	76	1.9	76	84	2	191	48	15	11	24	1.78
6902453--6902637	50	3.6	50	75	12	153	34	14	12	38	1.84
6902453--6902642	104	1.9	101	81	9	233	34	14	13	38	1.84
6904145--6904169	13	1.9	13	100	0	50	48	0	16	36	1.46
6905260--6905300	14	2.9	14	77	0	55	65	2	7	24	1.30
6906886--6906911	12	2.2	12	100	0	52	84	7	0	7	0.77
6916597--6916624	2	14.0	2	100	0	56	50	0	0	50	1.00
6916909--6916961	9	5.8	10	82	14	62	67	0	0	32	0.91
6916909--6916961	13	3.9	14	90	9	74	67	0	0	32	0.91
6916909--6916960	18	2.9	18	83	8	70	69	0	0	30	0.89
6916900--6916961	14	4.4	14	80	17	74	66	0	0	33	0.92
6919703--6926441	634	10.7	626	78	9	5792	37	11	10	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6926519--6926829	165	1.9	165	84	7	418	44	5	3	47	1.42
6926899--6926986	34	2.6	33	77	12	97	45	1	0	53	1.07
6926919--6926971	17	3.1	17	78	7	63	41	0	0	58	0.98
6928492--6928552	19	3.2	19	76	17	63	50	1	1	45	1.21
6928680--6928750	36	2.0	35	89	10	108	36	12	2	47	1.56
6928696--6928750	18	3.0	20	65	29	57	36	12	1	49	1.52
6942329--6942359	10	3.1	10	95	0	53	38	6	51	3	1.44
6942768--6942814	18	2.5	19	82	10	60	23	4	6	65	1.33
6943189--6943243	19	2.9	19	78	7	67	16	1	9	72	1.18
6943273--6943356	39	2.2	39	81	12	111	19	10	9	60	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64