genome.fa.s224.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  35  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5460286--5460358	35	2.0	34	82	10	83	52	6	10	30	1.63
5460412--5460455	18	2.4	18	85	11	63	22	0	34	43	1.54
5460475--5460708	13	17.8	13	73	13	160	18	1	34	45	1.60
5460462--5460663	27	7.4	27	72	12	137	18	1	35	44	1.59
5460475--5460708	20	11.6	20	71	13	140	18	1	34	45	1.60
5460487--5460708	7	34.0	6	70	19	110	18	1	34	45	1.61
5460543--5460580	12	3.2	12	85	7	51	18	5	36	39	1.73
5460490--5460708	84	2.6	85	79	8	214	19	1	33	45	1.61
5461710--5461749	11	3.5	11	83	6	53	17	7	37	37	1.78
5461709--5461765	23	2.4	23	88	2	78	17	5	38	38	1.72
5461754--5461861	7	16.4	7	68	18	63	17	1	36	44	1.60
5461723--5461811	13	7.0	13	71	15	62	16	3	40	39	1.66
5461787--5461861	13	5.8	13	76	17	66	17	1	33	48	1.56
5461786--5461861	26	2.9	26	71	19	77	17	1	34	47	1.56
5461721--5461850	39	3.4	38	79	10	115	18	3	36	42	1.66
5464266--5464422	50	3.2	49	77	11	160	45	16	8	28	1.77
5464399--5464585	49	3.8	50	74	10	145	47	11	11	29	1.75
5464591--5464910	50	6.5	48	74	10	154	46	12	10	30	1.76
5464413--5464764	179	2.0	178	92	2	591	48	11	11	28	1.75
5464591--5465022	48	8.9	47	73	10	289	46	11	11	30	1.76
5464591--5465089	96	5.1	96	76	7	351	45	11	11	31	1.75
5465767--5465956	33	5.8	33	72	6	107	30	19	14	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5465814--5465974	66	2.5	66	78	3	155	28	19	16	36	1.93
5465992--5466067	31	2.5	31	75	12	84	25	21	18	35	1.95
5466120--5466191	31	2.3	31	80	0	90	30	19	9	40	1.84
5466247--5466275	11	2.6	11	100	0	58	17	17	0	65	1.27
5467945--5468045	22	4.8	21	75	12	75	6	21	0	71	1.09
5468463--5468514	27	2.0	27	96	3	97	9	11	0	78	0.95
5468482--5468517	17	2.2	16	90	5	54	8	11	0	80	0.90
5470586--5470632	20	2.3	21	78	10	53	29	10	12	46	1.76
5471910--5471945	3	12.0	3	100	0	72	66	0	0	33	0.92
5472107--5472220	26	4.3	26	73	17	83	18	2	33	45	1.63
5472159--5472297	7	20.6	7	70	7	72	19	0	30	49	1.53
5472159--5472297	20	6.8	20	75	7	111	19	0	30	49	1.53
5472159--5472300	27	5.3	27	69	13	103	19	0	30	48	1.54
5472305--5472398	49	1.9	49	93	0	161	46	13	9	29	1.75
5480447--5480501	28	1.9	29	81	3	67	18	12	1	67	1.32
5481398--5481433	3	12.0	3	100	0	72	66	0	0	33	0.92
5481601--5481648	19	2.5	19	89	0	78	16	0	35	47	1.47
5481639--5481705	27	2.5	27	78	4	73	20	4	34	40	1.73
5481568--5481750	13	13.9	13	68	11	86	18	3	32	45	1.68
5481568--5481750	20	8.9	20	67	15	70	18	3	32	45	1.68
5481600--5481812	13	16.2	13	67	11	60	18	3	31	46	1.66
5482573--5482597	13	1.9	13	100	0	50	68	16	8	8	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5488374--5488420	21	2.2	21	88	0	67	29	14	12	42	1.83
5492357--5492457	21	4.8	21	82	0	103	40	31	5	21	1.77
5492357--5492457	42	2.4	42	84	0	130	40	31	5	21	1.77
5493088--5493134	13	3.1	15	82	11	53	65	10	0	23	1.23
5497841--5497950	51	2.2	51	89	0	166	43	7	21	27	1.79
5499081--5499114	15	2.3	15	89	0	50	52	2	23	20	1.60
5499980--5500044	28	2.4	27	82	10	78	32	3	1	63	1.19
5500094--5500190	30	3.2	30	81	5	99	54	1	5	39	1.29
5500144--5500181	12	3.2	12	81	7	51	65	0	2	31	1.06
5500105--5500239	60	2.2	60	81	10	150	57	1	5	35	1.30
5502431--5502513	43	1.9	43	92	4	141	24	21	18	36	1.95
5504016--5504044	13	2.1	14	93	6	51	41	0	10	48	1.37
5509258--5509326	18	3.9	18	83	9	88	21	0	8	69	1.15
5509258--5509332	12	6.3	12	87	1	89	20	0	9	70	1.14
5509258--5509326	6	11.7	6	87	1	77	21	0	8	69	1.15
5510362--5510405	23	1.9	23	86	9	63	18	0	6	75	1.02
5510380--5510474	10	9.3	10	68	10	50	14	2	12	70	1.26
5510354--5510411	24	2.5	23	75	13	64	15	3	5	75	1.11
5510390--5510474	24	3.4	24	80	6	89	15	2	12	69	1.29
5510419--5510476	19	3.0	20	82	5	75	13	1	12	72	1.20
5510570--5510612	14	2.9	15	86	6	52	23	2	11	62	1.40
5510778--5511091	24	12.8	24	70	15	105	29	5	13	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5510788--5510914	57	2.2	57	90	1	202	28	8	14	48	1.74
5511081--5511121	11	4.1	10	81	12	57	29	7	19	43	1.78
5520721--5520768	23	2.1	23	84	0	60	29	14	25	31	1.95
5521202--5521460	137	1.9	137	93	1	448	35	12	15	37	1.84
5521439--5521623	48	4.1	47	73	12	156	29	13	19	37	1.90
5521436--5521623	90	2.1	91	85	6	249	29	13	19	37	1.90
5521618--5521712	41	2.3	41	85	8	131	31	9	15	43	1.79
5521983--5522055	6	12.3	6	80	2	85	26	1	6	65	1.25
5521992--5522042	17	2.9	17	88	5	75	27	1	5	64	1.27
5521986--5522067	23	3.5	23	78	8	85	25	1	7	65	1.25
5521987--5522089	12	9.0	11	75	10	66	23	0	7	67	1.22
5522720--5522762	19	2.3	18	84	8	50	13	0	23	62	1.31
5523146--5523208	15	4.4	14	73	16	58	14	1	9	74	1.13
5523165--5523207	10	4.5	10	82	11	63	16	0	11	72	1.13
5523133--5523218	25	3.4	25	81	10	88	16	3	8	72	1.23
5523304--5523346	14	2.9	15	86	6	52	23	2	11	62	1.40
5523497--5523734	24	9.6	24	69	15	146	33	6	9	50	1.61
5523531--5523658	57	2.3	56	87	5	188	30	7	11	50	1.67
5524689--5524759	29	2.4	29	86	4	90	32	8	7	52	1.59
5524708--5524755	14	3.4	14	83	13	62	33	10	4	52	1.55
5525576--5525620	12	3.6	12	81	18	56	33	0	0	66	0.92
5530553--5530605	18	2.9	19	77	8	65	26	3	0	69	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5530680--5530723	23	2.0	21	82	8	52	34	4	2	59	1.30
5532123--5532151	15	2.0	15	93	6	51	48	6	6	37	1.57
5532416--5532518	50	2.1	50	83	5	129	57	7	8	26	1.56
5533196--5533220	12	2.1	12	100	0	50	52	8	0	40	1.31
5534419--5534572	63	2.4	64	73	15	147	37	17	11	33	1.86
5534589--5534658	35	2.0	35	91	0	113	34	12	20	32	1.90
5537620--5537655	19	1.9	18	94	5	63	44	19	11	25	1.83
5538013--5538112	14	7.2	14	72	15	91	69	0	6	25	1.11
5538014--5538094	30	2.7	29	86	7	101	70	0	6	23	1.10
5538019--5538127	24	4.5	23	74	19	80	69	0	4	25	1.07
5537993--5538118	23	5.5	23	73	21	77	69	0	5	24	1.09
5538022--5538118	33	3.0	30	74	12	86	71	0	5	23	1.06
5538383--5538750	41	9.0	41	82	6	329	40	22	13	23	1.89
5538382--5538750	81	4.5	81	79	7	327	40	22	13	23	1.89
5539020--5539124	43	2.4	44	77	15	119	33	18	13	35	1.89
5540401--5540439	16	2.4	16	95	0	69	23	10	17	48	1.78
5540522--5540637	34	3.6	31	80	5	124	6	20	0	72	1.07
5540544--5540634	32	2.8	31	83	8	110	5	20	0	73	1.03
5547289--5547334	13	3.5	13	84	3	56	76	2	2	19	1.00
5547604--5547646	11	4.0	10	80	14	50	0	39	0	60	0.97
5548106--5548170	17	3.9	17	82	8	71	66	0	7	26	1.19
5548097--5548220	41	2.9	42	77	11	128	70	0	5	22	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5548097--5548257	4	39.8	4	66	10	60	69	1	4	24	1.15
5548096--5548222	16	7.7	17	72	12	88	70	0	5	22	1.12
5548086--5548222	43	3.2	41	71	12	109	70	1	5	23	1.16
5548118--5548263	43	3.4	41	75	15	118	69	1	4	23	1.15
5548108--5548264	84	1.9	84	86	2	226	69	1	4	24	1.14
5550638--5550759	63	1.9	63	83	5	156	41	13	15	29	1.85
5550897--5551078	63	2.9	62	72	9	154	39	11	14	34	1.82
5550909--5551089	62	2.9	62	72	4	166	40	11	13	34	1.80
5551220--5551709	252	1.9	252	80	6	555	39	9	12	38	1.76
5551223--5551743	63	8.3	62	68	12	222	39	9	11	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64