genome.fa.s224.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  8  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647582--647627	15	3.3	15	82	11	53	10	8	0	80	0.91
647561--647627	26	2.6	25	77	15	73	11	11	0	76	1.03
648147--648199	11	4.7	11	86	9	72	1	13	0	84	0.69
648155--648193	13	2.9	13	88	11	53	0	10	0	89	0.48
648147--648199	21	2.4	22	90	6	81	1	13	0	84	0.69
648147--648192	10	4.3	10	86	13	65	0	13	0	86	0.56
648147--648212	18	3.9	17	78	11	64	3	12	1	83	0.83
648151--648212	29	2.1	29	80	16	67	3	11	1	83	0.82
648160--648211	21	2.5	21	87	6	70	3	7	1	86	0.76
649055--649113	25	2.4	25	85	0	73	32	25	20	22	1.98
650984--651046	13	4.9	13	86	3	74	49	19	11	20	1.78
655233--655272	21	1.9	21	84	0	53	27	32	7	32	1.85
656709--656748	8	4.8	8	84	9	53	80	0	12	7	0.91
656708--656749	9	4.8	9	82	5	59	80	0	11	7	0.88
657175--657276	33	3.1	33	77	14	104	70	0	24	4	1.07
657218--657250	13	2.4	14	85	10	50	69	0	24	6	1.10
658654--658710	23	2.4	23	82	8	62	28	1	1	68	1.09
658825--658876	27	1.9	27	84	0	68	15	5	0	78	0.92
660590--660647	25	2.3	25	84	0	71	20	20	24	34	1.97
661017--661071	19	2.9	19	81	5	67	12	0	5	81	0.84
661011--661081	30	2.4	30	85	0	97	12	0	4	83	0.79
661011--661087	18	4.3	18	73	23	65	12	0	5	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661026--661087	6	10.2	6	79	20	51	11	0	6	82	0.84
661025--661130	14	7.4	14	73	9	63	12	2	6	78	1.05
661267--661400	31	4.4	31	72	5	92	39	10	25	24	1.87
661617--661795	64	2.8	64	81	5	184	26	13	20	38	1.91
661676--661795	32	3.7	31	78	6	114	25	12	22	39	1.89
662010--662111	22	4.6	22	79	4	98	27	18	18	35	1.95
662353--662377	13	1.9	13	100	0	50	88	0	12	0	0.53
662873--662906	16	2.2	15	94	5	59	82	0	17	0	0.67
662797--662905	53	2.1	50	83	10	128	73	0	18	8	1.07
663781--663900	63	1.9	63	89	6	190	31	16	19	32	1.94
664247--664301	24	2.3	23	84	3	65	76	3	0	20	0.94
666975--666999	7	3.6	7	100	0	50	84	0	0	16	0.63
670052--670095	20	2.2	20	87	0	61	22	18	4	54	1.61
670063--670101	20	2.0	20	89	0	60	20	20	2	56	1.54
672525--672585	13	4.6	13	74	11	52	72	3	14	9	1.24
672539--672592	26	2.1	25	83	10	65	77	3	14	3	1.04
673958--674037	34	2.3	34	78	4	88	37	18	16	27	1.92
676430--677354	463	2.0	463	99	0	1841	44	7	13	34	1.72
677365--677408	23	1.9	23	81	9	54	70	2	0	27	0.99
678189--678226	13	3.0	13	80	7	51	81	13	0	5	0.85
680825--680864	14	3.1	14	75	17	50	70	0	2	27	1.01
681086--681139	27	2.0	27	89	7	83	51	16	5	25	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681089--681142	13	4.1	13	73	4	54	51	14	5	27	1.64
681135--681224	19	4.8	19	75	8	85	52	18	10	18	1.73
681129--681198	19	3.7	19	82	3	88	50	18	11	20	1.77
685268--685302	18	1.9	18	94	0	61	54	0	2	42	1.15
686790--686845	22	2.7	20	75	8	51	73	1	23	1	1.03
686835--686869	8	4.6	8	93	6	56	65	0	34	0	0.93
688080--688154	21	3.6	20	67	15	53	70	1	21	6	1.17
689053--689125	29	2.5	29	77	6	76	35	19	16	28	1.93
689225--689524	67	4.5	66	76	8	232	35	18	16	30	1.93
689146--689690	33	16.5	34	67	11	163	34	17	17	30	1.93
689150--689524	67	5.6	66	75	9	185	35	18	15	30	1.92
689799--690101	35	8.7	34	72	9	155	12	15	20	51	1.76
689764--690020	70	3.7	69	76	11	211	13	15	19	51	1.76
689764--690055	70	4.2	70	76	7	182	13	15	19	51	1.76
690117--690147	12	2.6	12	94	0	53	90	6	3	0	0.55
691887--691926	14	3.1	14	75	17	50	70	0	2	27	1.01
692150--692216	14	4.9	13	75	8	53	55	16	4	23	1.60
692158--692219	27	2.3	27	91	0	97	53	17	4	24	1.63
692212--692288	19	4.1	19	76	5	75	42	24	19	12	1.86
692292--692339	19	2.5	20	80	6	64	35	29	14	20	1.93
693190--693221	17	1.9	17	93	6	57	46	3	0	50	1.17
693190--693241	19	2.8	19	80	8	54	48	1	1	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694329--694360	7	4.6	7	96	0	55	78	0	9	12	0.97
694663--694687	13	1.9	13	100	0	50	48	16	12	24	1.79
694734--694785	20	2.6	20	76	11	52	44	19	13	23	1.86
695177--695203	5	5.4	5	100	0	54	81	0	0	18	0.69
695908--695941	13	2.8	12	91	8	52	0	17	0	82	0.67
695899--695943	16	3.0	16	84	12	60	0	22	0	77	0.76
699102--699135	12	2.8	12	95	0	59	44	8	14	32	1.76
701503--701537	13	2.8	12	87	12	52	0	20	0	80	0.72
701503--701537	6	5.5	6	90	10	52	0	20	0	80	0.72
702986--703031	18	2.6	18	77	12	51	28	6	6	58	1.48
704831--704909	19	4.2	19	80	1	97	16	12	31	39	1.86
705629--705663	17	2.1	17	88	0	52	28	5	0	65	1.15
705692--705732	15	2.7	15	76	0	55	17	2	14	65	1.37
706850--706910	28	2.1	28	85	8	79	4	13	6	75	1.16
706857--706916	29	2.1	29	81	6	68	5	18	6	70	1.29
709130--709162	3	11.0	3	93	0	57	63	0	3	33	1.10
709791--709823	13	2.5	13	95	0	57	51	27	0	21	1.48
709851--709886	13	2.8	13	87	12	56	58	16	0	25	1.38
709896--709951	13	4.3	13	73	8	51	53	17	3	25	1.60
709806--709925	45	2.6	46	84	6	138	53	18	5	23	1.64
709916--709998	26	3.2	25	73	13	71	49	24	6	20	1.71
709896--709991	39	2.5	40	82	3	106	50	20	5	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711648--711687	21	2.0	20	95	5	71	12	0	17	70	1.18
711644--711708	17	3.6	17	78	17	60	13	0	13	72	1.13
712595--712650	4	14.0	4	82	0	67	23	23	3	50	1.65
712595--712650	16	3.5	16	82	0	76	23	23	3	50	1.65
714300--714340	16	2.6	16	84	3	57	78	0	17	4	0.93
714937--714981	24	2.0	22	91	8	72	22	24	4	48	1.68
715075--715116	16	2.6	16	88	3	57	85	2	11	0	0.68
715075--715116	21	2.0	20	86	4	57	85	2	11	0	0.68
715649--715686	14	2.9	13	84	7	51	84	0	10	5	0.77
715654--715712	21	2.8	20	85	14	75	83	0	10	6	0.82
716581--716758	32	5.5	32	76	12	141	37	20	12	30	1.89
716713--716797	42	2.0	42	88	4	127	37	22	11	28	1.89
716868--716950	32	2.6	31	81	7	94	37	16	15	30	1.90
716990--717045	23	2.4	23	81	0	67	37	17	19	25	1.94
717175--717550	35	10.7	35	71	4	184	21	21	7	48	1.75
717158--717636	105	4.6	104	74	6	268	22	20	7	48	1.75
717327--717554	70	3.2	69	81	4	233	22	21	7	48	1.74
717632--717767	70	1.9	70	82	5	168	20	20	9	49	1.77
717455--717760	105	2.9	104	84	5	384	21	20	8	48	1.76
717794--718146	62	5.7	62	77	3	311	21	24	13	40	1.89
717827--718083	31	8.4	31	69	5	137	20	23	14	41	1.89
717800--718164	184	2.0	183	81	1	435	21	24	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717950--718168	31	7.1	31	70	4	138	20	22	14	42	1.89
717827--718177	122	2.9	122	81	4	312	21	23	13	41	1.89
718257--718357	18	5.6	17	69	26	57	76	11	1	9	1.11
718257--718357	16	5.6	18	68	18	59	76	11	1	9	1.11
718259--718400	72	1.9	74	81	12	171	73	10	2	12	1.19
720679--720711	3	11.0	3	93	0	57	63	0	3	33	1.10
720798--720852	18	3.2	18	69	5	51	69	0	1	29	0.99
721076--721157	13	5.8	13	72	18	56	54	20	3	20	1.59
721110--721157	13	3.7	13	85	0	60	56	20	4	18	1.58
721083--721144	33	1.9	32	90	3	97	56	22	1	19	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64