genome.fa.s224.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  22  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3160326--3160381	19	3.0	18	76	7	67	25	0	5	69	1.09
3160330--3160361	5	6.8	5	86	13	50	21	0	0	78	0.76
3160474--3160607	57	2.3	59	87	5	184	41	11	5	41	1.65
3160493--3160629	59	2.4	57	85	3	166	43	7	7	42	1.60
3160535--3160801	100	2.7	97	81	11	303	43	11	8	35	1.72
3160559--3160801	102	2.5	98	82	12	293	43	11	9	36	1.72
3164786--3164827	20	2.1	20	82	8	50	57	2	4	35	1.33
3173101--3173247	63	2.3	62	81	6	161	37	10	11	40	1.77
3173128--3173247	63	1.9	63	86	6	172	38	10	10	40	1.74
3173342--3173597	62	4.1	61	73	8	167	39	13	11	34	1.81
3174708--3174745	19	1.9	19	89	5	58	65	0	31	2	1.06
3175762--3175806	17	2.6	17	82	10	56	64	0	0	35	0.94
3176285--3176339	6	9.3	6	75	16	53	80	1	1	16	0.90
3176290--3176324	19	1.9	19	88	11	56	82	2	0	14	0.77
3176290--3176340	18	2.9	18	82	8	61	80	1	1	15	0.89
3177428--3177666	80	3.0	81	85	1	320	33	7	9	49	1.63
3181489--3181522	12	2.8	12	86	4	50	52	0	0	47	1.00
3189759--3189811	26	2.0	27	92	3	90	58	13	3	24	1.51
3191048--3191724	125	5.5	124	71	10	445	34	10	10	45	1.72
3190942--3191711	187	4.1	187	83	2	856	34	10	10	44	1.73
3191035--3191718	62	11.0	62	69	9	315	34	9	10	45	1.73
3192308--3192352	17	2.6	17	89	0	63	35	4	0	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3194453--3194495	4	10.5	4	80	14	52	74	2	2	20	1.04
3195069--3195227	17	9.1	17	74	7	97	50	10	10	28	1.69
3195069--3195212	52	2.8	53	81	4	159	49	11	10	28	1.72
3195069--3195233	35	4.7	36	72	6	124	50	12	9	27	1.70
3195261--3195541	45	6.2	45	72	9	173	43	12	7	36	1.71
3195326--3195537	46	4.7	45	73	9	180	43	13	8	34	1.74
3195525--3195554	15	2.0	15	93	0	51	36	6	10	46	1.64
3195636--3195680	22	2.0	22	83	8	56	33	17	17	31	1.94
3195982--3196140	70	2.3	71	82	4	180	41	15	13	30	1.85
3199450--3199488	20	2.0	20	85	10	53	23	20	12	43	1.86
3202005--3202053	22	2.3	22	86	13	68	22	16	4	57	1.56
3202015--3202055	11	3.7	11	81	18	50	26	14	2	56	1.51
3202920--3202993	38	1.9	38	83	5	96	44	37	1	16	1.56
3202995--3203082	13	6.9	13	80	11	76	45	34	2	18	1.62
3203065--3203106	13	3.5	13	75	18	54	47	40	0	11	1.40
3203039--3203094	18	3.0	18	84	5	67	50	37	0	12	1.41
3206215--3206273	30	1.9	31	83	10	77	76	5	1	16	1.05
3206888--3206963	22	3.1	24	66	23	68	31	0	10	57	1.32
3206862--3206961	49	2.0	50	96	1	184	32	1	10	57	1.39
3207231--3207272	11	3.7	11	79	17	50	26	2	4	66	1.23
3208747--3208798	28	1.9	26	84	7	68	46	5	0	48	1.26
3208901--3208968	29	2.4	30	76	13	74	50	1	1	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3208964--3209017	29	1.9	29	85	7	76	35	3	7	53	1.47
3209640--3209906	62	4.3	61	72	12	188	40	11	12	35	1.80
3210166--3210198	17	1.9	17	93	0	57	45	0	0	54	0.99
3211319--3211384	30	2.2	31	88	2	98	31	3	9	56	1.46
3212025--3212084	3	19.7	3	96	3	111	31	0	1	66	1.01
3218412--3218538	68	1.9	68	84	0	173	37	7	13	41	1.72
3219064--3219099	15	2.4	15	90	0	54	16	8	11	63	1.49
3219378--3219515	55	2.6	52	75	9	145	48	12	7	31	1.69
3221829--3221872	21	2.2	20	84	11	56	38	2	0	59	1.10
3222031--3222086	22	2.6	22	76	20	57	41	1	1	55	1.21
3222519--3222569	28	1.9	25	84	11	66	27	0	7	64	1.21
3224696--3224747	24	2.3	23	83	12	63	7	7	1	82	0.91
3224696--3224747	23	2.3	23	83	6	61	7	7	1	82	0.91
3239687--3239758	35	2.1	35	97	0	135	43	16	18	22	1.88
3250629--3250690	30	2.1	30	100	0	124	24	9	16	50	1.75
3252184--3252251	21	3.2	21	87	0	100	50	0	1	48	1.10
3252184--3252275	42	2.1	42	84	6	112	54	0	1	44	1.07
3252242--3252283	16	2.6	16	81	11	50	64	0	0	35	0.94
3253801--3253895	28	3.2	29	75	13	79	44	2	1	52	1.19
3253926--3253996	29	2.4	30	79	9	74	53	2	5	38	1.39
3261008--3261061	21	2.6	21	85	2	74	12	27	25	33	1.93
3261882--3261965	43	2.0	43	92	0	141	29	35	3	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3262155--3262208	22	2.5	21	79	11	56	29	12	11	46	1.77
3262353--3262390	19	2.0	19	100	0	76	42	15	15	26	1.87
3263152--3263311	59	2.6	62	81	4	193	35	16	6	41	1.75
3263261--3263405	71	2.0	71	87	0	209	39	10	4	46	1.57
3263326--3263458	57	2.3	59	87	6	184	37	9	3	49	1.52
3264416--3264480	26	2.5	25	79	13	78	76	4	1	16	1.02
3264416--3264480	5	12.6	5	76	15	62	76	4	1	16	1.02
3264696--3264887	44	4.3	44	79	3	181	45	15	13	25	1.82
3265067--3265113	22	2.1	23	84	11	62	31	21	17	29	1.96
3265379--3265429	21	2.5	21	87	3	77	37	13	7	41	1.74
3265338--3265572	78	3.0	79	85	2	292	35	19	7	37	1.81
3265457--3265496	21	1.9	21	94	0	71	45	17	0	37	1.49
3265578--3265626	14	3.6	14	76	18	50	40	10	6	42	1.63
3266714--3266803	23	3.9	23	73	15	62	10	12	2	75	1.13
3266730--3266803	8	8.8	8	76	16	60	9	12	2	75	1.14
3266729--3266807	17	4.6	17	77	14	81	10	12	2	74	1.16
3266753--3266807	26	2.0	28	86	10	78	10	14	0	74	1.07
3270808--3270964	61	2.7	57	75	15	149	33	14	7	44	1.72
3270982--3271172	60	3.2	60	93	0	321	36	7	5	50	1.53
3271221--3271277	23	2.6	22	83	8	71	78	8	0	12	0.95
3271530--3271576	15	3.1	15	76	11	51	2	40	0	57	1.11
3271861--3271889	14	2.0	15	93	6	51	0	10	6	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3272120--3272182	5	12.6	5	79	12	67	79	3	0	17	0.86
3276412--3276538	60	2.1	60	82	5	159	35	7	7	50	1.57
3278263--3278336	38	2.0	37	84	7	96	58	21	14	5	1.57
3278335--3278381	12	3.9	12	81	8	51	82	6	8	2	0.90
3278717--3278768	27	2.0	25	82	14	61	51	1	19	26	1.57
3279065--3279264	53	3.7	54	76	9	196	47	6	10	35	1.64
3279048--3279175	53	2.4	54	83	7	156	50	8	8	32	1.64
3280325--3280367	23	1.9	22	95	4	77	48	4	6	39	1.51
3287961--3288309	70	5.0	69	74	12	277	39	8	11	41	1.70
3287961--3288218	69	3.7	70	81	7	294	42	6	10	40	1.66
3287961--3288285	139	2.3	137	77	12	322	40	7	10	41	1.69
3288339--3288478	64	2.2	63	81	5	149	42	7	7	42	1.61
3288446--3288481	12	2.8	13	87	8	56	44	0	5	50	1.25
3293086--3293155	26	2.6	26	86	8	88	57	11	2	28	1.48
3293086--3293155	13	5.2	13	75	3	68	57	11	2	28	1.48
3295216--3295269	22	2.4	23	81	12	67	38	0	5	55	1.23
3295288--3295330	22	1.9	23	90	4	70	72	0	0	27	0.85
3295336--3295365	13	2.3	13	94	0	51	23	6	3	66	1.30
3295503--3295568	22	3.0	22	73	8	62	43	7	21	27	1.79
3297423--3297454	10	3.1	10	91	8	55	0	12	0	87	0.54
3297391--3297451	12	5.1	12	72	7	52	4	14	0	80	0.87
3297423--3297452	11	2.8	11	95	5	53	0	13	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3301333--3301377	15	3.0	15	83	0	63	44	28	11	15	1.81
3310875--3310908	17	2.0	17	88	0	50	58	2	17	20	1.51
3314957--3314994	17	2.2	17	86	9	51	44	0	2	52	1.14
3319119--3319151	17	1.9	17	93	0	57	69	6	6	18	1.30
3323570--3323606	15	2.5	15	100	0	74	40	10	21	27	1.86
3326403--3326467	32	2.1	31	85	2	85	32	15	12	40	1.84
3329449--3329483	15	2.2	17	90	10	56	14	11	28	45	1.79
3329988--3330036	25	2.0	25	95	0	89	55	14	4	26	1.57
3330013--3330107	42	2.1	43	81	12	104	61	8	2	28	1.37
3334132--3334205	1	74.0	1	75	0	58	86	2	9	1	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64