genome.fa.s224.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  40  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6298281--6298415	61	2.3	57	86	8	175	42	2	2	51	1.32
6298338--6298409	36	2.0	36	83	8	92	44	4	2	48	1.36
6299859--6299883	2	12.5	2	100	0	50	52	0	0	48	1.00
6302153--6302204	12	4.2	12	76	9	52	57	0	1	40	1.10
6302186--6302247	30	2.1	30	85	11	85	54	0	0	45	0.99
6302206--6302251	14	3.4	13	85	8	65	56	0	0	43	0.99
6303143--6303188	23	2.2	19	82	17	56	65	0	4	30	1.12
6303144--6303188	20	2.1	20	88	12	63	66	0	4	28	1.11
6315505--6315548	20	2.2	20	84	8	54	45	0	0	54	0.99
6316202--6316241	16	2.6	16	88	4	55	57	5	0	37	1.21
6316416--6316454	20	2.0	20	89	0	60	46	5	2	46	1.38
6316375--6316477	47	2.2	47	81	13	115	51	4	0	42	1.29
6316428--6316478	27	1.9	26	84	11	68	50	3	1	43	1.31
6316744--6316780	19	1.9	19	88	0	56	32	2	5	59	1.34
6317003--6317046	22	2.0	21	83	12	54	50	2	9	38	1.47
6328326--6328386	24	2.5	25	78	10	72	42	4	3	49	1.40
6328294--6328427	58	2.3	58	87	8	193	42	2	3	50	1.35
6331653--6331706	24	2.2	26	87	9	78	40	0	5	53	1.24
6331953--6332004	25	2.1	25	82	7	61	36	19	3	40	1.70
6337328--6337373	23	2.2	19	82	17	56	65	0	4	30	1.12
6337329--6337373	20	2.1	20	88	12	63	66	0	4	28	1.11
6346889--6346929	21	2.0	21	85	9	57	21	14	24	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6352320--6352390	18	3.7	18	76	16	54	35	1	2	60	1.20
6353057--6353108	22	2.4	21	73	20	54	55	5	3	34	1.42
6356892--6356917	13	2.0	13	100	0	52	69	0	0	30	0.89
6362875--6362929	18	2.9	18	83	5	65	43	0	12	43	1.42
6362900--6362930	10	3.1	10	95	0	53	41	0	16	41	1.48
6362900--6362930	15	2.1	15	93	0	53	41	0	16	41	1.48
6363910--6363974	22	2.9	22	84	6	69	18	4	3	73	1.13
6363920--6363976	22	2.5	23	82	8	71	21	5	1	71	1.14
6371808--6371908	50	2.0	50	94	0	175	40	18	3	36	1.70
6372949--6372994	20	2.2	20	84	3	65	52	2	0	45	1.13
6372952--6373046	27	3.4	28	72	20	83	48	1	0	50	1.07
6372940--6373046	21	5.8	18	69	20	60	48	0	0	50	1.07
6372949--6373044	48	2.0	46	80	13	106	50	1	0	48	1.07
6373002--6373049	18	2.6	19	87	6	64	45	0	0	54	0.99
6375801--6376027	15	14.9	14	66	18	73	20	4	28	47	1.69
6375889--6375975	23	3.8	23	69	14	63	20	3	27	48	1.66
6375928--6376019	7	12.4	7	72	15	51	21	2	27	48	1.61
6375794--6376109	8	40.8	8	68	16	96	19	3	28	48	1.65
6375818--6376108	16	18.8	16	69	13	128	19	3	28	48	1.65
6378154--6378308	70	2.2	70	79	4	170	47	10	20	20	1.80
6378081--6378308	35	6.5	34	71	10	140	47	10	20	20	1.80
6378081--6378340	105	2.5	106	78	7	287	48	10	20	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6378262--6378416	70	2.2	70	77	4	161	49	9	17	23	1.75
6378417--6378813	172	2.3	170	78	5	386	45	10	21	22	1.82
6378705--6379073	173	2.1	172	78	5	388	45	10	22	22	1.82
6379028--6379106	35	2.3	34	76	10	79	49	6	21	22	1.72
6379231--6379301	35	2.0	35	91	5	117	52	9	15	22	1.72
6379231--6379322	35	2.7	35	86	5	107	51	8	17	22	1.73
6379437--6379831	173	2.3	173	80	3	429	47	11	21	19	1.81
6379437--6379992	173	3.2	173	78	4	424	47	10	19	21	1.80
6379925--6380005	35	2.3	35	82	4	92	53	9	17	19	1.71
6379837--6380111	139	2.0	139	81	2	320	49	10	18	22	1.77
6381317--6381380	22	2.8	23	71	4	58	29	20	20	29	1.97
6381372--6381443	22	3.3	22	72	3	65	18	18	30	33	1.94
6388527--6388747	8	28.5	8	70	12	104	17	3	28	50	1.63
6388527--6388819	16	17.8	16	68	17	120	18	3	29	49	1.63
6388529--6388708	69	2.6	66	78	15	161	17	3	27	51	1.61
6388528--6388742	31	7.0	30	70	14	102	17	3	28	50	1.63
6388703--6388756	24	2.3	23	81	9	63	12	5	33	48	1.65
6388686--6388770	40	2.1	40	86	0	116	16	3	31	48	1.63
6388743--6388788	24	1.9	24	86	0	65	21	4	26	47	1.69
6388790--6388829	16	2.5	16	79	0	53	17	2	32	47	1.61
6388739--6388837	24	4.1	24	62	14	60	21	3	27	48	1.64
6395549--6395599	19	2.7	20	78	9	61	31	3	19	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6401531--6401561	14	2.1	15	94	5	55	25	19	0	54	1.44
6404075--6404122	20	2.4	20	100	0	96	18	18	14	47	1.82
6407396--6407496	27	3.7	25	83	12	69	75	1	17	4	1.08
6407424--6407497	6	13.0	6	71	16	50	75	1	20	2	1.00
6407425--6407496	28	2.6	29	91	6	121	76	1	19	2	0.99
6407477--6407557	40	2.1	40	80	15	91	70	6	18	4	1.27
6412549--6412587	19	2.1	19	85	0	51	53	12	12	20	1.71
6423057--6423095	21	2.0	20	90	10	62	46	15	5	33	1.68
6424816--6424857	21	2.0	21	86	4	59	38	2	16	42	1.61
6431044--6431072	11	2.5	12	88	11	51	6	13	0	79	0.93
6431127--6431161	3	11.7	3	100	0	70	31	0	0	68	0.90
6431081--6431137	30	1.9	29	82	3	69	15	1	8	73	1.16
6433327--6433391	7	9.0	7	71	18	53	27	3	1	67	1.14
6433327--6433406	28	2.8	28	86	5	97	31	2	2	63	1.20
6434034--6434075	16	2.6	16	77	11	50	42	0	0	57	0.99
6434143--6434188	21	2.3	20	82	10	58	47	13	2	36	1.54
6435415--6435450	15	2.4	16	90	9	58	47	0	0	52	1.00
6435468--6435537	33	2.2	32	84	7	88	47	0	2	50	1.16
6435468--6435550	35	2.4	34	84	4	96	46	0	3	49	1.19
6435692--6435732	1	41.0	1	100	0	82	100	0	0	0	0.00
6441153--6441281	27	4.9	27	69	21	110	30	24	9	35	1.87
6441132--6441328	79	2.5	79	93	0	331	28	23	10	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6443253--6443278	11	2.4	11	100	0	52	92	0	7	0	0.39
6443253--6443286	10	3.3	10	91	4	50	88	0	11	0	0.52
6443748--6443773	12	2.2	12	100	0	52	84	0	0	15	0.62
6444510--6444595	12	7.1	12	68	16	52	68	4	3	23	1.24
6444522--6444578	24	2.3	25	87	3	80	66	3	5	24	1.28
6444918--6445018	30	3.4	31	71	14	88	47	27	1	22	1.62
6444897--6445029	58	2.3	59	79	12	157	45	28	3	22	1.67
6445141--6445178	14	2.6	15	83	8	51	52	23	0	23	1.47
6445109--6445175	28	2.4	27	73	9	62	52	23	1	22	1.56
6451868--6451899	11	2.9	11	100	0	64	18	25	9	46	1.79
6453237--6453331	41	2.3	42	82	8	115	26	20	16	36	1.93
6453803--6454000	88	2.2	88	81	3	220	19	15	19	45	1.85
6453979--6454030	22	2.4	22	86	0	68	28	19	17	34	1.94
6454112--6454395	110	2.6	111	83	2	358	22	17	16	42	1.89
6454362--6454444	36	2.3	37	91	4	132	16	10	15	56	1.66
6454191--6454417	109	2.1	110	82	2	269	22	17	17	42	1.88
6454473--6454521	22	2.2	22	92	0	80	26	12	16	44	1.82
6454588--6454652	22	3.0	22	80	14	64	30	21	15	32	1.94
6454450--6455278	132	6.3	131	80	7	671	24	18	16	39	1.91
6454739--6454781	22	2.0	22	90	0	68	34	23	13	27	1.93
6454398--6455278	264	3.3	262	78	6	814	24	18	16	40	1.90
6455311--6455394	36	2.3	37	76	12	93	19	14	14	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6460335--6460377	11	3.9	11	75	0	50	69	11	2	16	1.28
6464922--6464997	37	2.1	37	92	0	125	30	21	13	35	1.91
6465600--6465647	25	1.9	25	91	0	78	43	2	2	52	1.24
6467532--6467571	15	2.8	14	85	14	55	45	0	2	52	1.14
6470416--6470667	132	1.9	132	90	1	398	34	8	18	38	1.81
6479766--6479814	20	2.4	21	80	19	59	63	4	0	32	1.13
6486072--6486106	16	2.2	16	89	0	52	48	8	8	34	1.64
6487895--6487956	21	2.9	21	74	11	63	58	9	3	29	1.46
6493903--6493936	7	4.9	7	88	0	50	14	0	14	70	1.17
6493912--6493952	14	2.8	15	82	13	50	17	0	12	70	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64