genome.fa.s224.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  11  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1101582--1101612	12	2.7	12	95	5	55	32	0	0	67	0.91
1102456--1102493	13	3.1	12	85	14	51	0	36	0	63	0.95
1102441--1102482	20	2.0	21	86	13	61	2	33	0	64	1.07
1103146--1103191	3	15.3	3	81	0	56	43	0	0	56	0.99
1103146--1103191	12	3.8	12	91	0	74	43	0	0	56	0.99
1103152--1103201	24	2.1	24	85	7	66	50	2	0	48	1.12
1109983--1110018	18	1.9	19	94	5	65	52	0	2	44	1.15
1117734--1117759	2	13.0	2	100	0	52	50	0	0	50	1.00
1126737--1126820	35	2.4	35	75	16	86	40	2	0	57	1.12
1126779--1126820	21	2.0	21	86	9	59	40	2	0	57	1.12
1126717--1126805	18	4.8	18	68	18	58	40	1	0	58	1.05
1126747--1126820	18	4.1	17	76	13	60	39	2	0	58	1.13
1134732--1134806	39	1.9	39	83	5	98	49	4	0	46	1.20
1136375--1136402	13	2.2	13	100	0	56	57	7	7	28	1.52
1139959--1139989	9	3.3	9	91	8	53	0	12	0	87	0.55
1139960--1139990	15	2.0	16	93	6	55	0	16	0	83	0.64
1140863--1140943	40	2.0	40	83	4	101	65	13	7	13	1.46
1140880--1140943	8	8.0	8	74	19	53	62	12	9	15	1.54
1142251--1142931	200	3.4	197	80	6	707	44	10	11	33	1.74
1144409--1144446	14	2.5	15	83	16	51	10	15	5	68	1.36
1158926--1159957	517	2.0	517	94	0	1832	29	15	19	35	1.93
1164652--1164691	15	2.7	15	88	7	55	57	10	25	7	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1174049--1174094	17	2.5	19	82	17	69	39	8	28	23	1.84
1178268--1178349	31	2.6	31	86	7	130	37	15	7	39	1.76
1180962--1181286	162	2.0	161	92	0	542	25	15	16	43	1.86
1188295--1188338	22	2.0	23	95	4	81	50	6	4	38	1.50
1188881--1188923	21	2.0	22	86	4	61	34	4	0	60	1.17
1193427--1194036	333	1.8	333	87	0	907	26	18	24	30	1.98
1196324--1196358	16	2.2	16	89	0	52	40	11	14	34	1.82
1198500--1198567	32	2.1	32	100	0	136	57	2	16	23	1.53
1198516--1198571	17	3.4	17	65	9	53	57	1	16	25	1.49
1202628--1202682	16	3.4	16	79	2	56	54	0	3	41	1.18
1202853--1202899	23	2.0	23	100	0	94	31	8	4	55	1.49
1217098--1217137	21	2.0	20	85	5	53	65	5	2	27	1.27
1217663--1217812	63	2.4	63	80	10	164	38	6	8	48	1.57
1217808--1217984	85	2.2	80	81	9	205	37	6	10	45	1.64
1217919--1218170	125	2.1	120	85	6	328	39	8	7	44	1.62
1217919--1218170	62	4.1	60	82	10	271	39	8	7	44	1.62
1228930--1228979	23	2.0	25	81	11	59	34	4	12	50	1.58
1231429--1231517	46	1.9	46	81	4	108	24	29	16	29	1.97
1239044--1239303	128	2.0	128	98	0	502	34	16	11	36	1.86
1251772--1251803	14	2.4	13	94	5	55	78	12	0	9	0.97
1252116--1252163	16	3.4	13	78	18	51	75	2	20	2	1.02
1252453--1252558	54	2.0	54	96	0	194	49	11	16	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254401--1254686	149	1.9	149	84	5	382	27	16	15	39	1.89
1254363--1254695	149	2.2	148	80	6	370	29	17	15	36	1.91
1262871--1262953	31	2.7	30	83	5	94	26	8	15	49	1.73
1262993--1263065	26	3.0	25	70	29	77	26	5	12	56	1.57
1263008--1263048	19	2.0	21	90	9	68	29	4	14	51	1.63
1263030--1263067	13	2.9	13	80	11	51	26	5	13	55	1.59
1263661--1263786	44	2.9	44	82	4	146	21	8	13	56	1.64
1269205--1269272	18	3.8	17	74	14	66	75	0	19	5	1.01
1269195--1269267	35	2.2	33	76	21	82	75	0	20	4	0.97
1269205--1269262	19	3.1	19	80	9	57	75	0	18	5	0.98
1269296--1269326	15	2.1	15	93	0	53	77	0	22	0	0.77
1274722--1274786	20	3.3	19	71	14	51	44	38	1	15	1.56
1274722--1274798	13	5.9	13	76	13	61	45	37	1	15	1.55
1275578--1275777	42	4.8	41	76	8	165	28	13	20	37	1.91
1277304--1277336	4	8.5	4	86	6	50	21	3	0	75	0.93
1277296--1277332	15	2.5	15	91	8	58	18	2	2	75	1.04
1277309--1277351	19	2.3	19	84	8	52	20	6	2	69	1.23
1281995--1282061	12	5.6	12	73	18	59	61	5	0	32	1.20
1282106--1282160	26	2.1	26	93	0	92	60	14	3	21	1.50
1291952--1292165	108	2.0	108	82	5	263	45	9	7	37	1.64
1292060--1293610	161	9.6	160	75	8	1123	43	14	8	33	1.76
1292060--1293604	483	3.2	479	84	4	1798	43	14	8	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1297021--1297068	21	2.3	21	77	0	60	37	20	10	31	1.87
1299752--1299795	22	2.0	22	95	0	79	43	13	11	31	1.80
1303443--1303550	23	4.6	23	91	2	162	41	18	25	13	1.88
1303697--1303740	22	2.0	22	95	0	79	43	13	11	31	1.80
1312635--1312941	152	2.0	152	97	0	578	34	14	23	26	1.94
1312949--1313316	153	2.4	152	84	5	462	52	8	19	20	1.72
1314300--1314393	35	2.5	38	78	18	106	36	23	9	30	1.87
1314255--1314387	35	3.7	35	74	20	105	41	20	9	29	1.83
1314658--1314700	13	3.5	12	81	12	52	79	0	20	0	0.74
1315040--1315141	22	4.6	22	78	1	96	29	20	18	31	1.97
1315041--1315178	67	2.1	66	84	1	177	29	23	18	28	1.98
1315221--1315263	23	1.9	23	95	4	79	27	18	25	27	1.98
1315215--1315298	22	3.8	22	83	9	80	28	25	21	25	1.99
1315476--1315603	22	5.8	22	74	6	98	32	30	16	21	1.95
1315476--1315603	44	2.9	44	77	9	136	32	30	16	21	1.95
1315646--1315974	104	3.2	104	79	1	365	36	14	13	34	1.87
1315669--1315968	103	2.9	104	81	2	352	37	14	14	34	1.86
1315876--1316204	126	2.6	126	84	4	414	33	17	14	34	1.90
1316385--1316436	20	2.7	18	83	16	61	80	7	3	7	1.00
1316414--1316444	16	1.9	16	93	0	53	87	3	0	9	0.66
1318988--1319019	16	2.0	16	100	0	64	68	0	0	31	0.90
1325301--1325330	7	4.3	7	100	0	60	73	0	13	13	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1328207--1328310	50	2.1	49	87	5	147	33	7	16	42	1.77
1328318--1328659	50	6.9	50	75	7	241	38	10	12	39	1.77
1328337--1328659	100	3.2	99	79	8	334	39	9	12	38	1.76
1330825--1331020	61	3.2	61	85	1	241	24	17	13	43	1.86
1331024--1331248	13	17.2	13	75	16	173	45	36	0	17	1.52
1331031--1331248	20	11.1	20	76	13	179	45	36	0	17	1.52
1331031--1331248	7	33.3	7	72	18	166	45	36	0	17	1.52
1331082--1331251	59	2.8	60	78	10	154	45	36	0	17	1.53
1332757--1332803	25	2.0	24	84	16	62	74	10	10	4	1.20
1334010--1334071	31	2.0	31	84	6	81	32	19	9	38	1.84
1335168--1335209	13	3.2	13	86	6	57	47	14	7	30	1.71
1335194--1335262	17	3.8	19	72	18	58	49	8	4	37	1.54
1335226--1335269	16	2.7	16	92	3	70	47	6	6	38	1.57
1335582--1335695	41	2.8	41	84	0	147	53	8	7	30	1.58
1335583--1335683	21	4.9	21	73	12	102	52	9	5	31	1.59
1335621--1335818	73	2.7	77	83	10	231	54	9	5	31	1.53
1335659--1335729	32	2.2	33	84	5	99	54	8	7	29	1.57
1335712--1335872	24	7.0	24	72	16	135	54	9	3	32	1.50
1335726--1335872	47	3.2	45	78	14	142	55	8	2	33	1.45
1335797--1335842	20	2.2	20	88	3	65	56	10	2	30	1.46
1335784--1335872	21	4.1	21	73	13	81	55	10	2	32	1.46
1335691--1335872	66	2.7	67	74	16	178	54	9	3	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1336526--1336561	12	2.8	13	91	4	56	69	11	0	19	1.18
1336915--1337224	133	2.4	132	79	10	345	38	18	14	28	1.90
1337070--1337227	41	3.5	49	82	13	139	38	17	14	29	1.89
1336812--1337227	43	9.7	43	78	9	368	37	18	13	29	1.90
1344610--1344651	14	3.1	14	80	13	52	45	11	7	35	1.69
1344633--1344744	18	6.2	18	71	18	81	50	8	5	35	1.57
1344653--1344722	16	4.1	18	65	22	51	50	8	4	37	1.53
1344847--1344893	25	1.9	24	86	4	67	48	14	2	34	1.56
1344872--1344913	18	2.3	18	83	0	57	54	11	4	28	1.57
1344882--1344917	18	1.9	18	94	5	63	58	11	5	25	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64