genome.fa.s224.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  42  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6642421--6642467	21	2.3	20	78	7	51	29	25	0	44	1.54
6643217--6643251	3	12.0	3	93	6	63	31	0	0	68	0.90
6644235--6644283	21	2.3	21	82	6	55	53	0	0	46	1.00
6645216--6645252	11	3.4	11	89	10	58	59	5	2	32	1.34
6645238--6645277	21	2.0	21	85	5	55	57	2	5	35	1.34
6645368--6645409	18	2.3	18	83	0	57	61	2	2	33	1.21
6645454--6645532	19	4.1	18	73	12	59	54	3	6	35	1.44
6645450--6645544	41	2.3	40	81	15	106	53	3	5	37	1.39
6645540--6645581	20	2.2	19	87	8	59	69	0	2	28	1.01
6645540--6645582	19	2.2	20	87	4	61	69	0	2	27	1.00
6645692--6645739	20	2.4	20	82	6	62	39	4	6	50	1.47
6653873--6653903	16	1.9	16	93	0	53	41	0	3	54	1.16
6654907--6654935	2	14.5	2	100	0	58	51	0	0	48	1.00
6657067--6657116	3	16.7	3	100	0	100	66	0	0	34	0.92
6657334--6657392	27	2.2	26	81	6	73	69	1	3	25	1.13
6657509--6657847	30	11.4	30	77	9	284	47	30	0	20	1.56
6657568--6657650	14	5.8	14	73	10	60	53	30	0	16	1.44
6657568--6657629	8	8.4	8	71	16	53	53	30	0	16	1.43
6657516--6657847	118	2.8	118	77	10	279	47	30	0	21	1.56
6657509--6657822	148	2.1	149	84	6	406	48	30	0	20	1.56
6657707--6657756	16	3.2	16	77	11	59	46	30	0	24	1.53
6657717--6657798	14	5.7	14	69	13	60	51	29	0	19	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6663634--6663663	6	5.2	6	92	8	53	0	0	13	86	0.57
6663778--6663821	23	2.0	22	86	4	61	25	11	45	18	1.82
6664026--6664058	14	2.3	15	89	5	50	3	0	12	84	0.72
6665143--6665191	23	2.0	25	92	7	84	51	0	0	48	1.00
6665469--6665513	16	2.8	15	83	12	54	28	4	2	64	1.25
6665526--6665602	5	15.6	5	78	9	70	32	1	3	62	1.22
6665556--6665599	17	2.7	17	86	6	56	31	0	2	65	1.05
6667383--6667468	41	2.1	41	91	0	136	36	13	12	37	1.84
6668082--6668156	38	2.0	37	89	2	114	26	13	5	54	1.60
6671087--6671170	10	8.6	9	73	21	55	80	2	9	7	0.97
6671111--6671170	19	3.3	17	76	17	50	81	0	10	8	0.87
6671086--6671157	10	6.9	10	76	7	72	81	2	8	6	0.94
6671868--6672326	121	3.8	121	75	6	374	16	22	15	45	1.85
6672045--6672266	122	1.8	122	80	1	266	17	22	13	46	1.82
6672612--6672636	11	2.3	11	100	0	50	36	16	0	48	1.46
6672634--6672750	5	23.8	5	71	16	68	35	5	3	55	1.39
6672609--6672723	47	2.4	48	77	12	121	35	6	3	53	1.45
6672658--6672729	3	26.3	3	72	18	50	36	2	2	58	1.27
6672639--6672720	37	2.2	37	82	8	96	35	3	4	56	1.39
6672665--6672749	23	3.5	24	77	14	84	36	3	2	57	1.29
6672646--6672755	28	4.1	27	75	12	84	34	5	3	56	1.40
6673642--6673697	6	10.0	6	81	14	59	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6673642--6673695	22	2.5	22	87	6	83	20	0	0	79	0.73
6673648--6673695	17	2.8	16	84	12	60	20	0	0	79	0.74
6673645--6673711	28	2.4	29	87	7	95	20	2	0	76	0.92
6673638--6673695	5	12.0	5	75	17	52	20	0	0	79	0.74
6674496--6674578	41	2.1	39	84	8	105	37	14	12	36	1.83
6675767--6675794	1	28.0	1	100	0	56	0	100	0	0	0.00
6676935--6676989	27	2.1	26	86	3	74	65	0	1	32	1.03
6677039--6677073	16	2.1	17	89	5	54	34	5	0	60	1.21
6677036--6677076	17	2.4	18	84	12	59	36	4	0	58	1.20
6682001--6682053	21	2.5	21	96	0	97	15	22	52	9	1.70
6682015--6682129	30	3.8	30	87	0	158	18	15	55	10	1.68
6682076--6682143	18	4.1	17	68	24	56	19	13	55	11	1.67
6682076--6682177	48	2.1	48	92	0	168	19	13	55	10	1.67
6682106--6682143	18	2.1	18	95	0	67	18	13	57	10	1.63
6682046--6682191	78	1.9	78	92	0	247	18	15	55	10	1.68
6682124--6682194	30	2.4	30	90	0	106	18	15	56	9	1.66
6693783--6693849	24	2.7	23	77	18	64	1	20	4	73	1.09
6694223--6694252	6	5.0	6	91	0	51	3	0	16	80	0.85
6694217--6694252	12	3.0	13	84	15	51	5	0	13	80	0.88
6697341--6697387	3	15.3	3	95	4	85	68	0	0	31	0.90
6704817--6704860	22	2.0	22	100	0	88	45	27	9	18	1.79
6706652--6707514	431	2.0	431	98	0	1681	43	17	14	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6709921--6710237	167	1.9	167	98	0	616	41	18	10	29	1.83
6710942--6710983	20	2.0	20	90	9	66	38	0	0	61	0.96
6713453--6713521	34	2.0	34	94	0	120	40	10	18	30	1.84
6718840--6718968	66	2.0	66	96	1	242	40	23	10	25	1.87
6719552--6719585	2	17.0	2	100	0	68	0	0	50	50	1.00
6721750--6721803	21	2.5	21	81	6	63	35	11	3	50	1.56
6722919--6722949	1	31.0	1	100	0	62	100	0	0	0	0.00
6724979--6725011	11	3.1	11	91	8	59	36	0	0	63	0.95
6724979--6725020	22	2.0	22	90	4	68	35	0	0	64	0.94
6725064--6725141	32	2.4	33	87	6	124	28	12	8	50	1.71
6725406--6725451	19	2.3	21	78	14	53	58	2	2	36	1.22
6726463--6726518	16	3.5	16	81	18	80	62	0	25	12	1.30
6732401--6732434	15	2.2	16	94	5	61	73	5	0	20	1.04
6733396--6733420	9	2.8	9	100	0	50	24	0	0	76	0.80
6733407--6733451	22	2.0	22	82	8	54	28	4	0	66	1.11
6734405--6735155	47	15.8	48	78	9	640	28	10	20	40	1.86
6736722--6736764	13	3.3	14	81	12	56	72	0	0	27	0.85
6737970--6738022	25	2.2	24	83	10	63	33	1	1	62	1.17
6738622--6738747	50	2.5	51	76	7	139	47	3	1	47	1.27
6740431--6740477	24	2.0	24	86	0	67	40	10	19	29	1.85
6741308--6741367	29	2.1	29	90	0	93	40	21	1	36	1.64
6741955--6741979	13	1.9	13	100	0	50	24	0	12	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6742154--6742202	26	1.9	26	84	12	66	22	10	4	63	1.43
6742222--6742254	17	1.9	17	93	0	57	27	0	0	72	0.85
6742299--6742344	21	2.2	21	84	3	58	26	0	6	67	1.15
6743740--6743781	7	6.0	7	83	10	59	83	0	0	16	0.65
6743741--6743780	21	1.9	21	94	0	71	85	0	0	15	0.61
6743913--6743952	20	2.0	20	85	0	53	60	10	2	27	1.42
6744404--6744431	14	2.0	14	100	0	56	28	21	7	42	1.79
6752362--6752540	90	2.0	90	91	0	286	12	25	21	40	1.89
6753432--6753462	2	16.0	2	93	6	55	51	0	0	48	1.00
6757283--6757432	75	2.0	76	87	6	216	36	16	23	23	1.94
6759237--6759277	14	2.9	14	81	0	55	43	2	9	43	1.50
6761257--6761310	26	2.0	27	96	3	101	25	14	7	51	1.68
6761882--6762206	168	1.9	168	84	2	429	37	14	9	38	1.78
6762215--6762454	112	2.1	112	79	3	250	45	11	11	32	1.75
6763493--6763518	7	3.7	7	100	0	52	30	0	0	69	0.89
6765170--6765220	20	2.5	21	87	6	77	60	23	1	13	1.43
6765565--6765601	15	2.5	15	95	0	65	64	0	5	29	1.15
6772751--6772899	70	2.1	70	93	0	262	44	10	6	38	1.64
6773802--6774230	162	2.6	160	94	2	732	28	11	12	47	1.76
6774332--6774461	14	9.8	14	67	20	66	25	3	1	70	1.11
6774471--6774525	18	3.1	18	72	12	51	18	3	3	74	1.11
6775367--6775420	4	14.5	4	88	11	64	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6775358--6775524	9	16.8	10	69	18	75	20	2	3	73	1.10
6775442--6775521	11	6.8	11	75	18	63	13	5	2	78	1.01
6775442--6775524	5	16.4	5	73	14	64	14	4	2	78	1.02
6775352--6775516	6	25.8	6	67	19	61	21	2	3	73	1.09
6775560--6776010	120	3.7	119	86	8	603	45	5	12	36	1.67
6775550--6776011	178	2.6	178	83	8	555	45	5	12	35	1.66
6780106--6780167	23	2.8	22	69	9	54	30	4	16	48	1.67
6780490--6780547	17	3.4	17	82	0	71	37	15	8	37	1.78
6780706--6780736	16	1.9	16	93	0	53	41	6	12	38	1.69
6781343--6781444	6	16.7	6	72	9	64	30	1	5	61	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64