genome.fa.s224.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  64  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11179452--11179487	16	2.1	17	90	10	56	41	5	8	44	1.58
11179591--11180635	179	5.8	177	76	7	779	40	10	8	40	1.70
11179591--11180545	360	2.7	354	79	6	892	41	10	8	39	1.70
11179591--11180644	357	2.9	354	77	7	891	40	10	8	40	1.70
11181439--11181492	20	2.7	20	97	0	99	38	25	20	14	1.91
11182415--11182518	53	2.0	53	86	0	145	35	10	8	45	1.70
11182471--11183592	181	6.3	180	74	8	710	40	10	9	40	1.71
11182469--11183326	180	4.8	180	75	6	633	41	9	8	40	1.68
11183155--11183188	17	1.9	18	88	5	52	41	8	2	47	1.50
11183888--11184220	176	1.9	180	83	4	442	39	11	9	39	1.73
11183708--11184484	181	4.3	180	77	3	672	40	10	9	39	1.73
11184505--11184538	18	2.0	17	88	11	52	41	5	5	47	1.52
11184166--11184825	340	1.9	339	80	3	770	39	8	9	42	1.69
11184499--11184844	182	1.9	181	85	2	471	40	8	9	41	1.67
11184951--11185508	181	3.1	176	77	5	546	40	9	9	40	1.70
11185508--11185560	25	2.1	25	96	0	97	52	3	3	39	1.37
11185748--11186844	180	6.1	178	75	6	838	41	9	8	40	1.68
11185780--11186794	355	2.8	352	77	8	976	41	9	8	40	1.68
11186986--11187460	180	2.7	178	79	8	389	41	10	7	41	1.66
11188121--11188448	182	1.8	181	82	7	423	42	10	7	38	1.69
11188638--11190535	181	10.6	178	75	8	1142	39	9	8	42	1.68
11188638--11192141	359	9.8	351	72	11	1411	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11190647--11192157	181	8.4	182	75	7	937	42	9	7	39	1.67
11192032--11192306	149	1.9	146	85	2	379	44	8	8	39	1.65
11192181--11193049	181	4.9	178	77	7	703	42	8	7	40	1.64
11192975--11193110	69	2.0	70	91	1	220	44	8	8	38	1.65
11193407--11195799	363	6.7	359	72	9	1131	40	8	10	40	1.70
11193407--11195818	181	13.4	180	73	9	1514	40	8	10	40	1.70
11195925--11197824	181	10.5	177	71	12	774	39	8	10	42	1.70
11197122--11197825	360	2.0	362	78	8	756	39	8	10	42	1.69
11199048--11199375	169	1.9	168	83	4	419	39	8	11	40	1.71
11199588--11202437	181	16.0	181	74	8	1866	40	7	9	41	1.68
11199690--11202407	356	7.6	359	74	9	1178	40	7	10	41	1.68
11201561--11202000	171	2.5	173	77	11	423	40	7	10	41	1.66
11201962--11202303	175	1.9	180	80	10	400	39	6	10	42	1.66
11199588--11202407	180	15.8	176	73	9	1605	40	7	10	41	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64

The End!