genome.fa.s224.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  14  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1699077--1699114	16	2.4	16	91	8	60	55	0	10	34	1.34
1699164--1699199	16	2.2	17	90	5	56	63	8	2	25	1.36
1699565--1699645	23	3.5	23	84	0	108	25	43	11	19	1.84
1700868--1700932	17	3.9	16	77	18	71	32	1	0	66	1.01
1700881--1700934	7	6.9	7	77	22	54	29	1	0	68	1.00
1700877--1700932	17	3.5	15	82	17	76	30	1	0	67	1.01
1701306--1701347	13	3.3	13	90	3	59	0	2	14	83	0.75
1701306--1701358	12	4.3	12	83	9	63	0	3	15	81	0.83
1701355--1701398	8	4.7	9	79	20	54	20	0	4	75	0.98
1701343--1701421	29	2.7	29	74	18	74	13	1	7	77	1.05
1701374--1701412	18	2.2	18	86	4	53	17	0	2	79	0.84
1701741--1702007	33	7.9	34	70	17	146	31	11	19	38	1.87
1702217--1702291	29	2.6	29	73	0	78	29	21	21	28	1.98
1703231--1703322	16	5.7	15	70	22	62	2	20	1	76	0.96
1703274--1703328	23	2.3	24	84	3	76	3	21	0	74	0.97
1709538--1709611	19	3.9	19	73	7	60	17	10	28	43	1.83
1709631--1709684	26	2.0	26	86	10	74	24	3	20	51	1.63
1709615--1709732	60	2.0	59	88	5	175	26	3	20	50	1.64
1710040--1710089	15	3.1	15	83	11	55	24	0	2	74	0.93
1710036--1710091	22	2.5	22	85	5	67	25	0	1	73	0.93
1710145--1710217	17	4.3	16	77	20	69	53	8	6	31	1.57
1710845--1710918	23	3.3	23	76	3	69	24	39	14	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1712126--1712211	39	2.2	39	80	13	106	38	1	1	59	1.13
1721488--1721776	108	2.7	106	83	2	348	49	14	8	26	1.72
1756886--1756932	20	2.3	20	88	0	67	44	19	10	25	1.82
1756896--1756934	20	2.0	20	100	0	78	41	23	10	25	1.86
1757066--1757192	63	2.0	63	89	0	191	36	7	27	29	1.83
1757357--1757396	21	1.9	21	94	0	71	45	5	12	37	1.64
1757406--1757473	21	3.2	21	82	0	82	32	5	26	35	1.81
1762253--1762298	17	2.7	18	83	10	60	71	8	6	13	1.29
1776555--1776615	28	2.1	28	82	8	70	67	13	8	11	1.42
1795876--1795943	24	2.6	28	72	18	81	67	5	14	11	1.39
1795892--1795942	24	2.1	24	96	0	93	66	5	15	11	1.41
1804329--1804767	223	2.0	224	88	1	648	35	18	17	27	1.94
1823117--1823279	7	24.3	7	71	15	105	19	1	36	42	1.59
1823129--1823188	30	2.0	30	83	6	77	23	0	33	43	1.54
1823150--1823243	22	4.7	20	84	10	104	20	1	39	39	1.59
1823181--1823226	6	7.3	6	85	9	65	15	2	43	39	1.59
1823151--1823243	13	6.9	13	76	15	91	20	1	39	38	1.60
1823194--1823246	19	2.8	19	80	11	63	18	0	39	41	1.51
1823177--1823298	13	9.5	13	75	9	74	18	1	35	44	1.60
1823342--1823377	13	2.8	13	91	0	54	13	2	30	52	1.55
1827499--1827545	16	2.9	16	84	6	58	25	8	8	57	1.57
1830508--1830552	13	3.4	12	82	14	54	80	6	0	13	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830508--1830552	14	3.3	13	84	9	63	80	6	0	13	0.91
1830498--1830550	22	2.4	22	78	12	54	77	11	0	11	1.00
1831316--1831345	7	4.3	7	100	0	60	26	46	13	13	1.80
1833441--1833478	19	2.0	19	89	0	58	23	7	5	63	1.42
1834308--1834422	36	3.0	39	64	29	93	27	16	20	35	1.94
1839547--1839945	145	2.8	139	81	7	441	39	11	15	34	1.83
1842077--1842131	25	2.2	25	83	0	74	50	10	5	32	1.60
1842112--1842309	97	2.0	97	94	0	342	44	10	9	35	1.70
1843358--1843400	17	2.3	19	84	11	54	18	4	34	41	1.71
1843429--1843659	7	34.4	7	68	16	123	18	1	35	44	1.60
1843427--1843507	29	2.9	29	81	15	98	19	1	35	43	1.59
1843373--1843659	13	21.2	13	70	19	121	19	1	34	44	1.61
1843526--1843636	38	3.2	32	72	17	89	15	0	35	48	1.51
1843506--1843604	25	3.8	25	83	4	108	14	2	35	48	1.55
1843587--1843636	25	2.0	26	88	4	75	18	2	34	46	1.60
1843549--1843640	32	2.9	31	78	10	96	18	1	34	45	1.57
1844045--1844074	7	4.3	7	100	0	60	46	40	0	13	1.43
1845887--1846216	164	2.0	164	94	1	581	30	19	6	43	1.77
1847692--1847741	20	2.5	20	90	6	75	28	12	10	50	1.71
1851309--1851597	147	2.0	146	89	0	443	39	12	21	27	1.89
1851869--1851915	2	23.5	2	100	0	94	0	48	0	51	1.00
1854855--1854918	33	1.9	34	87	3	94	67	12	9	10	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1856969--1857027	17	3.5	17	77	13	59	55	6	3	33	1.43
1856960--1857011	16	3.2	16	77	17	54	50	7	5	36	1.55
1856960--1857032	33	2.2	33	85	2	94	50	8	6	34	1.59
1865783--1865859	40	1.9	40	84	5	102	37	12	9	40	1.76
1880106--1880130	13	1.9	13	100	0	50	40	0	0	60	0.97
1881864--1881905	21	2.0	21	100	0	84	33	4	0	61	1.17
1882987--1883027	21	2.0	21	90	4	66	4	2	12	80	0.97
1884632--1884731	39	2.6	39	71	6	94	29	22	22	27	1.99
1886173--1886202	12	2.5	12	94	0	51	20	13	23	43	1.86
1887068--1887093	13	2.0	13	100	0	52	46	0	0	53	1.00
1887155--1887186	2	16.5	2	93	6	57	50	0	0	50	1.00
1888403--1888427	2	12.5	2	100	0	50	48	0	0	52	1.00
1888711--1888742	7	4.6	7	100	0	64	87	0	0	12	0.54
1888802--1888880	16	4.9	16	77	11	74	56	0	0	43	0.99
1888802--1888873	32	2.2	32	83	9	85	58	0	0	41	0.98
1889642--1889676	17	2.0	18	88	5	54	71	5	0	22	1.07
1889782--1889806	11	2.3	11	100	0	50	44	0	0	56	0.99
1889754--1889800	22	2.1	22	88	7	69	46	0	0	53	1.00
1891648--1891772	50	2.4	50	80	12	155	51	1	0	46	1.16
1892447--1892565	49	2.3	52	77	11	138	45	0	4	50	1.21
1894443--1894471	14	2.0	15	93	6	51	55	6	0	37	1.27
1895963--1896013	21	2.4	21	80	6	59	27	25	3	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1899443--1899494	11	4.6	11	75	13	52	78	7	0	13	0.94
1899455--1899499	23	2.0	23	86	8	65	82	6	0	11	0.84
1900532--1900759	40	5.5	40	79	5	197	46	18	10	23	1.80
1905093--1905140	20	2.3	21	96	3	89	27	16	4	52	1.62
1907004--1907162	79	2.0	79	92	7	272	25	16	13	43	1.86
1913055--1913090	10	3.4	10	85	14	54	75	13	0	11	1.06
1918352--1918385	18	1.9	18	88	5	52	44	5	5	44	1.52
1926125--1926175	22	2.3	23	77	16	54	7	29	15	47	1.74
1932985--1933049	20	3.2	20	73	20	62	41	20	9	29	1.83
1933410--1933748	44	7.7	43	76	8	290	40	10	9	39	1.73
1933409--1933727	87	3.6	85	79	7	302	40	10	9	38	1.73
1933410--1933748	88	3.9	89	82	5	370	40	10	9	39	1.73
1933730--1933800	23	3.1	23	76	8	72	40	11	11	36	1.77
1933703--1933800	46	2.2	43	81	5	106	42	11	9	36	1.73
1934028--1934079	26	2.0	26	85	10	72	19	21	11	48	1.80
1934209--1934261	25	2.1	26	85	3	72	47	15	11	26	1.79
1936045--1936084	21	1.9	21	85	10	55	37	12	0	50	1.41
1936080--1936123	10	4.2	10	80	11	52	36	0	0	63	0.95
1936080--1936112	12	2.9	12	91	8	52	36	0	0	63	0.95
1936080--1936121	22	1.9	22	90	0	66	33	0	0	66	0.92
1936748--1936785	18	2.1	18	85	9	51	76	2	2	18	1.02
1936775--1936843	13	5.7	12	73	14	54	68	2	11	17	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1937456--1937495	8	4.7	9	80	20	50	7	20	0	72	1.08
1939532--1939607	38	2.0	38	92	0	125	42	17	21	19	1.90
1945548--1945576	2	14.5	2	100	0	58	0	51	0	48	1.00
1949460--1949513	25	2.2	25	86	3	74	51	14	7	25	1.68
1951819--1951849	3	10.3	3	92	0	53	64	35	0	0	0.94
1952234--1952261	2	14.0	2	100	0	56	0	50	0	50	1.00
1956312--1956355	3	14.7	3	90	0	70	65	2	0	31	1.05
1957116--1957153	3	12.7	3	100	0	76	65	0	0	34	0.93
1957152--1957177	3	8.7	3	100	0	52	34	0	0	65	0.93
1957670--1957719	17	2.9	18	77	19	61	52	4	2	42	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64