genome.fa.s224.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  61  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10302300--10302352	24	2.2	24	86	6	72	60	1	3	33	1.26
10302500--10302641	72	2.0	72	91	2	232	51	10	10	27	1.69
10309549--10309601	22	2.4	22	84	9	63	58	0	0	41	0.98
10309553--10309604	21	2.7	18	72	18	50	53	0	0	46	1.00
10319086--10319136	23	2.3	22	80	12	59	47	17	3	31	1.66
10319095--10319140	23	2.0	23	91	8	76	43	21	2	32	1.65
10319203--10319252	12	4.5	11	82	9	50	38	0	0	62	0.96
10319242--10319277	16	2.2	16	95	0	63	55	0	2	41	1.14
10320252--10320300	22	2.3	22	78	3	64	36	2	0	61	1.08
10328579--10328686	56	1.9	56	94	0	189	31	11	17	39	1.85
10342625--10342660	16	2.2	16	90	0	54	55	0	5	38	1.23
10343635--10343683	22	2.3	22	75	3	55	34	2	2	61	1.19
10356868--10356901	14	2.4	14	85	0	50	61	0	0	38	0.96
10364220--10364270	26	2.0	26	88	7	77	41	0	0	58	0.98
10364229--10364268	13	3.2	13	82	3	55	47	0	0	52	1.00
10364224--10364293	33	2.1	33	84	5	88	47	0	1	51	1.09
10364229--10364276	25	2.0	25	88	8	73	47	0	0	52	1.00
10372733--10372768	2	18.0	2	100	0	72	50	0	50	0	1.00
10373058--10373122	16	4.4	16	70	21	52	32	0	0	67	0.91
10373049--10373143	42	2.2	42	85	7	120	36	0	0	63	0.95
10376373--10376415	22	2.0	21	86	8	61	46	0	0	53	1.00
10376992--10377031	20	2.1	19	85	4	53	42	2	0	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10377302--10377340	3	13.0	3	94	0	69	33	2	0	64	1.08
10378001--10378053	22	2.5	22	78	9	65	58	0	0	41	0.98
10378638--10378702	15	4.2	15	75	14	51	56	4	0	38	1.20
10383182--10383216	15	2.3	15	95	0	61	28	34	22	14	1.93
10384115--10384160	22	2.1	22	84	8	58	47	0	2	50	1.13
10396480--10396512	9	3.7	9	95	0	57	15	0	0	84	0.61
10396480--10396518	18	2.2	18	85	0	51	17	0	0	82	0.68
10397043--10397095	21	2.5	21	81	0	61	30	7	13	49	1.69
10397198--10397242	21	2.0	23	87	8	67	28	0	0	71	0.87
10397211--10397245	19	1.9	17	88	11	52	28	0	0	71	0.86
10398157--10398183	13	2.1	13	100	0	54	48	22	22	7	1.75
10398681--10398748	28	2.2	31	75	12	70	50	5	1	42	1.35
10398726--10398770	22	2.0	22	87	8	65	48	0	0	51	1.00
10398734--10398774	16	2.5	17	80	11	59	46	0	0	53	1.00
10399177--10399217	11	3.5	11	81	12	55	70	0	2	26	0.99
10401039--10401099	22	2.8	22	78	11	63	60	0	0	39	0.97
10401039--10401099	23	2.8	21	76	11	59	60	0	0	39	0.97
10401149--10401214	32	2.1	32	82	0	78	50	0	3	46	1.16
10401819--10401859	18	2.2	19	86	4	57	24	2	2	70	1.11
10401890--10401931	22	1.9	22	85	9	59	57	0	0	42	0.99
10404389--10404418	15	2.0	15	100	0	60	40	26	0	33	1.57
10405312--10405349	20	1.9	20	89	10	60	65	5	0	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10405402--10405448	22	2.1	22	84	0	58	68	4	4	23	1.26
10405651--10405692	2	21.5	2	90	4	68	47	2	0	50	1.14
10412279--10412303	13	1.9	13	100	0	50	24	0	0	76	0.80
10412868--10412905	14	2.8	13	82	17	51	47	0	0	52	1.00
10416815--10416845	2	15.5	2	100	0	62	51	48	0	0	1.00
10416737--10416917	92	2.0	92	97	0	344	45	23	14	17	1.84
10416839--10416977	68	2.0	68	97	0	260	43	14	19	22	1.87
10418097--10418201	52	2.0	52	84	0	138	43	6	22	26	1.78
10421237--10421298	24	2.8	20	73	19	61	37	1	1	59	1.17
10421695--10421794	24	4.3	24	69	12	66	55	1	0	44	1.06
10423951--10424004	19	2.8	20	76	15	60	53	0	0	46	1.00
10424056--10424141	43	2.0	43	100	0	172	27	9	13	48	1.73
10425684--10425735	18	2.9	18	73	15	54	48	0	0	51	1.00
10437294--10437370	22	3.3	23	75	19	70	36	3	1	58	1.25
10444997--10445022	2	13.0	2	100	0	52	0	50	0	50	1.00
10447624--10447677	24	2.3	24	83	3	65	33	0	0	66	0.92
10453317--10453369	22	2.7	20	81	16	58	54	0	1	43	1.11
10453413--10453505	37	2.5	36	75	14	89	52	1	2	44	1.20
10459194--10459239	22	2.1	22	95	0	83	34	26	10	28	1.90
10467369--10467406	13	2.7	14	80	12	51	73	0	2	23	0.95
10467921--10467968	3	15.7	3	95	4	87	33	0	0	66	0.92
10470659--10470715	29	2.0	29	89	6	89	42	0	3	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10470811--10470879	29	2.3	30	80	7	77	44	5	0	49	1.26
10472754--10472781	2	14.0	2	100	0	56	50	0	0	50	1.00
10473292--10473338	24	2.0	24	86	0	67	57	2	8	31	1.41
10478338--10478399	26	2.4	25	84	5	79	37	4	16	41	1.69
10488457--10488505	14	3.5	14	78	10	55	34	0	4	61	1.15
10492429--10492462	2	17.0	2	100	0	68	50	0	0	50	1.00
10495389--10495455	16	4.4	16	72	9	50	43	0	1	55	1.09
10495424--10495465	21	2.0	21	90	4	68	57	0	0	42	0.99
10495423--10495471	18	2.5	20	84	15	68	53	0	0	46	1.00
10500472--10500501	11	2.8	11	95	5	53	60	0	10	30	1.30
10502302--10502344	5	8.0	5	85	10	50	65	0	0	34	0.93
10502294--10502431	6	23.5	6	68	16	67	58	0	0	39	1.08
10502285--10502343	28	2.0	31	87	9	88	62	0	1	35	1.05
10502304--10502431	11	11.6	11	68	18	79	59	0	0	39	1.03
10502352--10502417	30	2.2	30	83	5	80	54	1	0	43	1.09
10502304--10502431	28	4.7	28	72	17	108	59	0	0	39	1.03
10502302--10502431	17	7.9	17	68	18	87	59	0	0	40	1.03
10514525--10514589	22	3.3	21	66	28	52	43	0	7	49	1.31
10514523--10514601	37	2.1	37	85	0	104	44	0	6	49	1.28
10515370--10515411	13	3.2	13	83	13	50	59	16	0	23	1.37
10515564--10515614	24	2.1	24	100	0	102	37	19	17	25	1.94
10519263--10519347	44	1.9	44	81	9	102	51	3	1	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10521845--10521893	24	2.0	24	84	8	62	48	0	2	48	1.12
10525723--10525752	2	15.0	2	92	0	51	46	0	3	50	1.18
10526048--10526428	192	2.0	194	88	4	572	32	13	17	37	1.88
10526640--10526693	26	2.3	23	82	17	74	61	0	0	38	0.96
10526645--10526686	11	3.3	12	76	23	50	61	0	0	38	0.96
10526726--10526774	15	3.0	18	72	22	54	48	0	0	51	1.00
10526800--10526875	27	2.8	26	80	5	80	55	1	7	35	1.37
10527433--10527474	20	2.0	21	86	13	61	50	0	0	50	1.00
10527434--10527474	21	2.0	21	85	9	57	51	0	0	48	1.00
10528285--10528335	13	4.1	13	72	10	52	29	1	1	66	1.13
10529307--10529352	14	3.6	13	74	14	51	30	0	2	67	1.03
10529306--10529350	21	2.1	21	84	8	56	28	0	2	68	1.01
10530845--10530882	3	12.7	3	94	0	67	65	2	0	31	1.06
10531064--10531426	40	9.2	39	79	9	261	42	16	12	28	1.85
10531064--10531425	120	3.0	117	79	7	365	42	16	12	28	1.85
10531546--10531631	38	2.3	38	83	0	100	48	19	8	23	1.75
10543488--10543551	23	2.7	23	83	11	76	32	0	1	65	1.02
10543663--10543698	3	12.0	3	100	0	72	33	0	0	66	0.92
10544466--10544567	51	2.0	51	80	5	116	41	8	13	36	1.76
10545337--10545407	11	6.1	11	73	15	54	52	1	0	46	1.09
10545337--10545407	6	12.2	6	77	15	51	52	1	0	46	1.09
10545492--10545543	11	4.8	12	77	17	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10545492--10545545	21	2.4	22	84	9	65	55	0	0	44	0.99
10545477--10545557	33	2.5	32	76	9	83	54	0	1	44	1.08
10547619--10547643	2	12.5	2	100	0	50	48	0	0	52	1.00
10549308--10549365	18	3.2	18	90	4	89	56	0	1	41	1.09
10549861--10549902	22	1.9	22	85	9	59	42	0	4	52	1.22
10549928--10549969	19	2.2	20	84	16	63	64	0	0	35	0.94
10556298--10556343	2	24.5	2	82	12	62	52	0	0	47	1.00
10556800--10556859	30	2.0	30	83	6	77	35	5	8	51	1.54
10557990--10558027	8	4.9	8	93	6	60	44	0	0	55	0.99
10557990--10558027	15	2.4	16	91	4	60	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64