genome.fa.s224.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  49  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7844891--7844929	20	2.0	20	85	10	53	79	5	2	12	1.00
7845560--7845610	26	2.0	26	84	3	68	49	0	5	45	1.26
7845694--7845736	7	5.7	7	84	13	50	79	2	0	18	0.85
7845699--7845735	9	4.4	9	83	16	53	81	0	0	18	0.70
7845699--7845735	16	2.3	16	90	0	65	81	0	0	18	0.70
7847855--7847889	15	2.3	15	90	0	52	17	0	28	54	1.43
7847936--7847991	14	3.7	15	78	7	69	21	0	32	46	1.52
7847898--7847995	29	3.4	28	83	6	115	19	1	32	46	1.57
7849134--7849236	3	36.0	3	75	14	76	33	2	0	62	1.17
7849140--7849175	17	2.1	18	94	5	65	25	0	0	75	0.81
7849533--7849931	208	1.9	208	81	3	489	44	12	22	21	1.85
7849926--7850163	36	6.8	35	66	15	123	46	11	20	21	1.82
7849910--7850399	106	4.6	105	81	4	441	46	10	20	22	1.80
7850245--7850410	36	4.7	36	70	4	113	50	7	18	23	1.71
7849894--7850453	106	5.3	105	79	4	396	45	10	21	22	1.82
7850424--7850527	35	2.9	35	77	5	93	38	17	24	20	1.93
7850382--7850537	71	2.2	70	76	5	161	44	13	21	21	1.86
7850469--7850740	36	7.6	36	69	8	153	43	12	23	20	1.86
7850469--7850705	107	2.2	107	80	1	287	43	12	23	21	1.86
7850544--7850770	71	3.2	70	73	11	208	43	10	24	21	1.84
7850582--7850788	72	2.9	70	72	14	181	44	11	23	21	1.84
7861557--7861597	4	10.0	4	84	5	55	70	0	2	26	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7863259--7863290	15	2.1	15	94	0	55	21	0	21	56	1.43
7863273--7863320	22	2.2	22	88	0	69	12	0	29	58	1.35
7863288--7863327	15	2.6	15	92	4	62	7	0	30	62	1.23
7863344--7863401	7	7.9	7	75	11	53	15	0	39	44	1.47
7863350--7863405	29	1.9	29	89	7	87	17	0	35	46	1.49
7863407--7863433	14	1.9	14	100	0	54	22	0	3	74	0.98
7863404--7863435	17	1.9	16	93	6	55	21	0	3	75	0.95
7863598--7863637	21	1.9	21	84	0	53	20	20	25	35	1.96
7865778--7865818	13	3.1	14	86	6	50	24	4	0	70	1.06
7867645--7867727	21	3.8	21	71	12	67	37	8	14	39	1.76
7867668--7867779	53	2.1	54	80	12	124	36	8	14	40	1.77
7867971--7868018	16	3.0	16	76	11	53	29	12	12	45	1.78
7868176--7868931	41	18.0	41	76	6	627	23	11	18	45	1.82
7868176--7868931	84	9.0	82	77	8	560	23	11	18	45	1.82
7868402--7868500	52	1.9	52	89	0	153	18	10	21	50	1.75
7868367--7868546	93	1.9	94	86	3	256	20	11	20	47	1.80
7868186--7868931	260	3.0	250	84	5	908	23	11	18	45	1.82
7868176--7868931	125	6.0	123	75	7	550	23	11	18	45	1.82
7870116--7870153	17	2.2	17	100	0	76	78	0	0	21	0.74
7871415--7871471	8	7.1	8	76	7	53	17	1	3	77	1.00
7871840--7871887	24	2.0	23	88	4	69	37	14	2	45	1.57
7878313--7878374	1	62.0	1	73	0	52	87	3	3	6	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7878311--7878339	11	2.6	11	100	0	58	82	0	0	17	0.66
7878311--7878374	22	2.9	21	83	6	65	85	3	3	7	0.79
7878324--7878374	23	2.3	23	86	3	68	88	3	3	3	0.71
7880395--7880449	23	2.4	23	93	3	94	25	21	21	30	1.98
7880371--7880463	22	4.3	22	81	5	91	25	20	21	32	1.98
7880653--7880722	23	3.1	23	79	2	79	34	22	15	27	1.95
7880393--7880799	132	3.1	132	85	2	566	24	21	17	37	1.94
7880905--7880976	22	3.2	22	76	5	74	27	25	18	29	1.98
7880676--7880941	109	2.4	109	85	1	372	26	20	17	35	1.95
7881050--7881167	22	5.4	22	82	9	152	27	23	17	30	1.97
7881048--7881174	44	2.9	45	89	3	188	27	22	18	30	1.98
7881239--7881412	23	7.9	23	74	13	118	28	18	19	33	1.96
7880894--7881357	191	2.4	190	83	4	558	28	19	16	34	1.94
7881237--7881439	22	9.3	22	73	13	136	28	18	19	33	1.95
7881242--7881435	88	2.2	88	86	7	261	28	19	19	32	1.96
7881534--7881575	22	1.9	22	100	0	84	26	23	21	28	1.99
7881643--7882475	47	17.0	47	82	8	887	28	11	25	34	1.91
7881643--7882474	96	8.5	96	83	7	910	28	11	25	34	1.91
7881642--7882464	149	5.6	148	84	6	1005	28	11	25	34	1.91
7881643--7882464	198	4.2	196	86	5	1069	28	11	25	34	1.91
7882646--7882680	11	3.2	11	84	15	54	82	14	0	2	0.77
7882647--7882690	24	1.9	24	90	9	74	81	13	2	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7883377--7883406	2	15.0	2	100	0	60	0	50	0	50	1.00
7885561--7885600	20	2.0	20	95	0	71	45	17	5	32	1.70
7885986--7886123	59	2.3	61	82	10	160	29	14	11	44	1.81
7886035--7886159	60	2.1	61	80	10	141	28	12	12	47	1.76
7886569--7886601	2	16.5	2	100	0	66	48	0	0	51	1.00
7892130--7892182	16	3.4	16	85	12	65	86	3	1	7	0.75
7892130--7892182	23	2.2	24	86	3	72	86	3	1	7	0.75
7892130--7892174	7	6.1	7	85	10	54	86	2	2	8	0.73
7893885--7893989	41	2.6	41	84	6	133	33	20	17	29	1.95
7894047--7894395	121	2.8	123	89	3	542	32	16	16	35	1.91
7894498--7894573	22	3.5	22	80	10	102	25	27	21	26	1.99
7894809--7894868	22	2.7	22	89	0	93	26	25	20	28	1.99
7894929--7895162	22	10.6	22	76	11	144	27	19	19	33	1.96
7894936--7895143	88	2.4	88	87	7	280	27	20	19	32	1.97
7894989--7895170	45	4.1	44	76	13	176	26	20	20	31	1.97
7894933--7895170	23	10.8	23	75	14	182	27	20	20	32	1.97
7895239--7895280	22	1.9	22	100	0	84	26	23	21	28	1.99
7895126--7895328	110	1.8	110	88	0	307	24	18	18	39	1.92
7895347--7896181	49	17.0	48	82	8	943	28	11	25	34	1.91
7895347--7896169	149	5.6	148	84	6	980	28	11	25	34	1.91
7895348--7896181	96	8.5	95	83	7	962	28	11	25	34	1.91
7896350--7896384	11	3.2	11	84	15	54	82	14	0	2	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7896351--7896394	24	1.9	24	90	9	74	81	13	2	2	0.88
7897082--7897107	2	13.0	2	100	0	52	0	50	0	50	1.00
7899264--7899303	20	2.0	20	95	0	71	45	17	5	32	1.70
7899692--7899873	62	3.0	61	79	8	178	30	13	12	42	1.82
7900251--7900279	2	14.5	2	100	0	58	0	48	0	51	1.00
7900279--7900313	2	17.5	2	100	0	70	48	0	0	51	1.00
7905169--7905195	1	27.0	1	100	0	54	0	0	0	100	0.00
7909744--7909786	19	2.2	20	87	4	61	27	0	0	72	0.85
7909839--7909893	26	2.1	26	83	12	69	52	5	0	41	1.24
7911274--7911303	14	2.1	14	93	0	51	40	0	0	60	0.97
7912240--7912290	18	2.8	18	96	0	93	54	0	0	45	0.99
7912201--7912266	33	2.0	34	82	8	82	45	1	0	53	1.09
7914114--7914139	3	8.7	3	100	0	52	65	0	0	34	0.93
7922343--7922378	3	12.0	3	93	0	63	66	0	2	30	1.06
7924301--7924343	16	2.7	16	85	0	50	62	0	4	32	1.15
7937891--7937935	17	2.6	18	79	13	58	60	4	0	35	1.17
7938884--7938924	14	3.1	14	82	6	50	53	4	0	41	1.22
7938985--7939029	20	2.3	19	85	11	56	33	2	2	62	1.20
7942076--7942104	12	2.4	12	100	0	58	6	31	10	51	1.62
7947581--7947628	22	2.1	22	84	3	60	29	6	4	60	1.40
7948489--7948547	22	2.8	21	80	12	59	50	0	3	45	1.18
7948604--7948636	16	1.9	18	88	11	52	54	0	3	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7948716--7948772	29	2.0	29	82	0	69	45	3	5	45	1.43
7950243--7950289	19	2.6	19	80	6	53	48	4	2	44	1.34
7950665--7950734	17	4.1	16	76	20	61	65	1	0	32	1.01
7952038--7952093	24	2.3	24	82	11	62	55	0	1	42	1.10
7952497--7952535	21	1.9	21	89	5	62	38	0	2	58	1.12
7953701--7953758	27	2.2	26	81	12	64	56	0	0	43	0.99
7953856--7953880	7	3.6	7	100	0	50	52	0	0	48	1.00
7954455--7954494	19	2.1	19	85	0	53	65	0	0	35	0.93
7954598--7954671	33	2.2	33	81	6	96	41	0	1	56	1.07
7955660--7955903	132	1.8	134	81	1	303	44	4	8	43	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64