genome.fa.s224.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  44  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6943539--6943571	16	2.1	16	94	0	57	21	0	6	72	1.05
6943919--6944068	76	2.0	76	90	2	239	26	36	5	32	1.79
6955434--6955476	13	3.4	12	84	9	50	48	20	0	30	1.50
6955443--6955482	16	2.5	16	91	0	62	45	22	0	32	1.53
6960474--6960567	34	2.7	34	80	4	100	21	22	10	45	1.82
6960458--6960669	102	2.1	102	82	7	252	23	20	9	46	1.80
6960628--6960706	33	2.4	34	84	4	106	16	21	10	51	1.73
6976441--6976524	6	13.8	6	70	18	50	63	2	0	34	1.08
6976632--6976714	17	4.9	17	71	12	64	42	1	0	56	1.07
6976623--6976716	33	2.9	33	83	16	101	41	3	0	55	1.16
6977272--6977350	31	2.6	28	74	21	70	53	1	6	39	1.35
6977658--6977718	2	30.5	2	78	18	65	45	0	6	47	1.28
6981532--6981585	18	2.8	18	78	18	56	75	3	0	20	0.95
6982365--6982491	3	43.3	3	74	16	70	59	6	3	29	1.40
6982409--6982503	5	18.6	5	76	12	61	57	4	3	34	1.34
6982424--6982491	23	3.0	22	76	17	75	61	2	1	33	1.20
6984888--6984947	17	3.6	16	75	18	59	76	5	1	16	1.04
6985737--6985910	5	33.2	5	70	18	97	52	4	2	40	1.35
6985834--6985889	8	6.8	8	74	22	53	57	3	3	35	1.34
6985741--6985905	84	2.0	83	82	8	201	51	4	3	41	1.37
6986480--6986821	119	2.9	119	88	2	474	45	16	21	17	1.85
6986436--6986941	119	4.3	119	83	3	466	44	14	21	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6986753--6986971	119	1.8	120	83	2	289	45	12	21	21	1.83
6987782--6987845	8	7.8	8	72	18	51	9	7	1	81	0.94
6987779--6987853	16	4.5	17	75	17	77	8	9	1	81	0.94
6987782--6987854	9	8.7	9	73	18	59	8	8	1	82	0.91
6987783--6987854	26	2.9	25	82	15	96	8	8	1	81	0.92
6988135--6988175	16	2.6	16	80	3	57	9	4	4	80	1.00
6990331--6990356	13	2.0	13	100	0	52	7	23	7	61	1.49
6992589--6992626	20	1.9	20	94	0	67	42	34	5	18	1.73
6993017--6993097	3	29.7	3	68	26	56	58	1	2	38	1.20
6992978--6993205	20	11.9	18	68	17	113	51	2	2	43	1.27
6992978--6993179	15	14.0	15	70	17	99	50	1	1	45	1.21
6993096--6993136	3	13.7	3	94	0	73	34	2	0	63	1.08
6997294--6997387	26	3.5	26	71	21	86	45	3	2	48	1.30
6997287--6997391	54	1.9	54	86	7	151	46	2	2	47	1.32
6997294--6997385	27	3.5	25	72	17	78	45	3	2	48	1.30
7009286--7009364	30	2.7	29	78	5	86	32	5	6	55	1.47
7019797--7019831	8	4.4	8	96	0	61	8	14	28	48	1.73
7025760--7025793	17	1.9	18	88	5	52	79	5	11	2	1.02
7026359--7026393	6	5.8	6	90	10	54	20	0	0	80	0.72
7026359--7026393	11	2.9	12	87	12	54	20	0	0	80	0.72
7026359--7026457	12	8.9	11	72	16	71	20	3	3	73	1.10
7026408--7026457	23	2.2	23	89	10	77	18	2	2	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7026869--7026939	31	2.3	32	78	11	85	28	16	22	32	1.96
7027380--7027514	14	10.2	13	70	20	68	18	3	3	74	1.12
7027432--7027471	17	2.3	18	82	8	55	12	7	5	75	1.18
7027474--7027508	10	3.5	10	85	14	54	22	0	0	77	0.78
7027475--7027514	20	2.0	21	95	5	73	22	2	0	75	0.93
7027542--7027943	57	6.7	59	83	11	444	44	7	13	34	1.72
7027543--7027943	117	3.3	116	87	11	535	44	7	13	34	1.72
7027743--7027884	70	2.0	70	93	0	239	43	7	12	35	1.72
7027683--7027941	127	2.0	130	89	5	402	43	8	13	35	1.73
7027975--7028015	12	3.4	12	89	0	64	14	9	7	68	1.39
7029577--7029613	16	2.3	17	86	9	51	37	8	2	51	1.46
7030176--7030240	34	1.9	34	87	6	96	38	7	4	49	1.52
7030495--7030544	27	2.0	26	85	14	70	54	2	4	40	1.31
7031920--7032057	71	1.9	72	85	7	183	44	19	10	24	1.83
7033142--7033175	17	2.0	17	88	0	50	26	23	11	38	1.89
7037916--7037940	12	2.1	12	100	0	50	32	24	8	36	1.84
7044889--7044930	21	2.0	22	85	4	59	54	0	2	42	1.13
7057243--7057466	109	2.0	110	95	0	405	32	8	25	33	1.87
7058496--7058545	24	2.0	26	88	7	77	68	8	4	20	1.32
7063522--7064067	276	2.0	273	89	1	833	29	13	20	35	1.92
7066105--7066156	22	2.2	24	87	12	74	61	0	5	32	1.20
7068351--7068376	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7068501--7068567	27	2.5	27	85	0	89	35	0	10	53	1.35
7070291--7070326	2	18.0	2	94	0	63	47	0	2	50	1.15
7070517--7070553	3	12.0	3	94	5	65	35	0	0	64	0.94
7072777--7072836	29	2.1	29	81	6	70	46	6	1	45	1.39
7073939--7073969	2	15.5	2	100	0	62	51	0	0	48	1.00
7076467--7076517	21	2.3	23	86	6	70	43	1	5	49	1.38
7076502--7076544	12	3.5	13	78	12	54	41	0	4	53	1.21
7076481--7076544	12	5.4	12	72	9	51	42	0	4	53	1.22
7080417--7080588	74	2.4	74	78	2	186	37	10	5	46	1.62
7082035--7082406	195	1.9	198	82	7	470	34	13	7	44	1.71
7083536--7083587	13	4.2	12	78	7	50	76	0	23	0	0.78
7083790--7084213	46	8.8	47	80	9	421	37	22	12	26	1.90
7083796--7084218	150	2.9	145	82	11	476	37	22	12	27	1.90
7083790--7084213	98	4.4	95	79	10	427	37	22	12	26	1.90
7084838--7085164	161	2.0	160	91	2	532	23	20	11	44	1.84
7094373--7094404	3	10.7	3	100	0	64	68	0	0	31	0.90
7097067--7097096	15	1.9	16	93	6	53	63	0	0	36	0.95
7097067--7097096	8	3.9	8	91	8	53	63	0	0	36	0.95
7097220--7097306	29	3.0	28	76	6	93	58	2	2	36	1.23
7097258--7097301	23	2.0	23	86	13	65	61	0	0	38	0.96
7101239--7101346	56	1.9	56	94	0	189	23	11	20	45	1.83
7102109--7102262	81	1.9	79	85	2	209	44	6	9	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7104499--7104557	28	2.1	28	87	9	84	44	3	0	52	1.17
7104499--7104576	29	2.8	28	81	14	90	47	2	0	50	1.15
7104737--7104787	26	2.0	25	84	7	66	35	1	1	60	1.19
7104861--7104915	29	1.9	28	85	3	74	30	5	5	58	1.44
7104835--7104907	19	3.8	19	76	3	83	31	8	6	53	1.57
7104941--7104983	20	2.1	21	83	12	54	44	4	4	46	1.45
7108534--7108609	40	1.9	38	86	5	107	56	3	10	28	1.51
7109764--7109818	24	2.3	24	93	0	92	41	5	0	52	1.24
7111280--7111312	16	2.0	17	94	5	59	51	0	6	42	1.26
7118246--7118291	22	2.1	23	84	11	62	63	0	0	36	0.95
7118251--7118311	22	2.7	22	75	9	61	60	0	0	39	0.97
7118287--7118324	11	3.5	11	85	3	51	55	2	0	42	1.14
7118548--7118594	18	2.6	18	83	10	60	27	0	2	70	0.99
7125046--7125167	34	3.5	34	83	4	129	42	8	11	37	1.71
7130418--7130478	31	2.0	31	96	0	113	45	8	6	39	1.60
7135795--7135857	32	2.0	32	83	0	81	36	3	26	33	1.73
7136260--7136302	21	2.0	21	90	0	68	34	25	2	37	1.69
7139676--7139863	94	2.0	94	95	0	340	29	29	16	24	1.96
7143034--7143082	22	2.2	23	81	3	55	69	4	0	26	1.06
7145664--7145765	3	30.7	3	73	18	53	64	1	2	30	1.19
7145652--7145693	20	2.0	21	95	4	77	64	0	4	30	1.14
7145706--7145820	4	28.2	4	70	19	78	69	2	2	25	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7153881--7153930	17	3.2	16	86	8	59	78	0	10	12	0.98
7153879--7153951	16	4.4	16	80	14	78	79	0	12	8	0.93
7154951--7155241	43	7.1	41	78	10	265	27	14	19	38	1.91
7154957--7155241	83	3.4	81	85	7	326	27	14	18	38	1.90
7154952--7155284	83	4.0	81	81	9	286	27	15	18	39	1.90
7155208--7155290	45	1.9	42	82	7	103	25	15	19	39	1.91
7155478--7155624	3	45.7	3	70	21	68	32	4	0	62	1.19
7155490--7155602	34	3.4	34	76	10	117	34	3	0	61	1.20
7155478--7155624	57	2.4	62	79	18	155	32	4	0	62	1.19
7155538--7155641	52	2.0	54	92	3	140	33	5	0	59	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64