genome.fa.s224.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  12  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1344927--1344992	32	2.1	32	91	0	105	56	12	4	27	1.55
1344999--1345275	21	13.3	20	67	21	92	52	11	5	30	1.59
1345107--1345264	24	6.8	24	73	13	136	53	10	3	32	1.53
1345108--1345260	47	3.4	44	80	12	152	52	10	3	32	1.54
1352014--1352065	25	2.0	26	85	3	70	30	5	7	55	1.52
1352861--1352931	20	3.8	17	73	22	63	74	0	16	8	1.05
1353369--1353410	16	2.6	16	85	7	50	76	2	14	7	1.10
1353398--1353455	22	2.6	23	86	8	75	82	3	13	0	0.79
1353382--1353452	6	12.3	6	75	14	60	81	2	12	2	0.91
1353368--1353455	11	7.8	11	71	14	54	77	2	17	3	1.01
1353386--1353452	17	3.9	17	88	2	80	82	2	11	2	0.90
1353790--1353846	18	3.4	17	78	7	62	77	1	19	1	0.95
1355186--1355217	6	5.3	6	92	0	55	15	18	15	50	1.79
1355418--1355477	25	2.4	24	80	8	66	76	5	16	1	1.04
1355745--1355928	33	5.6	32	76	2	134	34	19	18	27	1.95
1356091--1356295	46	4.4	46	84	5	279	34	12	8	43	1.74
1356326--1356381	9	6.0	9	74	14	51	75	3	0	21	0.96
1356331--1356395	27	2.5	26	70	9	53	80	3	1	15	0.92
1362093--1362127	16	2.2	16	94	0	61	42	11	14	31	1.81
1367400--1367451	21	2.5	21	84	3	70	17	25	19	38	1.93
1369351--1369672	62	5.1	62	75	12	269	34	18	12	34	1.89
1369469--1369706	61	3.9	61	82	8	250	33	17	13	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1383392--1383457	29	2.3	29	92	2	107	45	4	1	48	1.32
1383953--1384050	36	2.7	36	78	10	110	50	6	10	33	1.61
1383953--1384052	38	2.8	36	80	7	105	50	6	10	34	1.60
1386071--1386103	15	2.2	15	89	10	50	15	3	0	81	0.80
1386226--1386273	4	11.8	4	86	4	51	72	8	0	18	1.08
1386450--1386474	9	2.8	9	100	0	50	0	0	8	92	0.40
1386528--1386642	41	2.7	44	72	12	112	47	18	9	24	1.78
1387166--1387312	44	3.2	44	72	23	149	38	17	11	32	1.85
1387165--1387348	94	2.0	94	92	0	305	38	16	11	33	1.85
1388553--1388586	10	3.6	10	84	15	54	0	20	0	79	0.73
1388529--1388606	16	4.6	16	73	20	68	8	17	0	73	1.09
1388535--1388618	9	9.3	9	76	18	70	9	16	0	73	1.08
1393557--1393586	11	2.7	11	100	0	60	0	20	0	80	0.72
1393557--1393600	11	3.9	11	90	3	52	0	25	0	75	0.81
1393734--1393800	30	2.2	30	86	5	91	46	20	10	22	1.81
1395274--1396010	271	2.7	269	91	4	1194	44	9	8	37	1.67
1396326--1396913	301	2.0	300	92	1	971	39	9	8	42	1.69
1398039--1398085	10	5.0	10	76	23	57	46	0	0	53	1.00
1398162--1398234	23	3.0	27	69	27	72	56	1	2	39	1.22
1398306--1398347	8	5.1	8	85	5	57	71	2	2	23	1.10
1398288--1398347	16	3.5	17	77	11	61	71	6	1	20	1.17
1399037--1399090	11	5.1	11	74	17	51	48	0	3	48	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1401087--1401161	7	10.6	7	75	13	57	80	5	4	10	1.01
1401092--1401163	16	4.4	16	72	6	54	80	5	4	9	1.00
1405670--1405719	16	3.1	16	91	8	75	80	0	16	4	0.87
1405675--1405737	16	3.8	16	83	8	72	73	0	22	4	1.02
1405675--1405737	33	1.9	33	83	0	81	73	0	22	4	1.02
1406397--1406459	18	3.4	18	85	10	76	77	1	14	6	1.03
1406892--1406972	20	3.9	20	80	15	76	79	1	16	3	0.95
1406924--1406971	17	2.7	18	84	12	64	83	2	14	0	0.74
1406923--1406975	19	2.7	20	85	5	72	83	1	15	0	0.74
1407303--1407359	30	1.9	30	82	7	71	77	0	17	5	0.95
1407311--1407378	5	13.2	5	71	17	50	77	0	20	1	0.84
1408004--1408047	21	2.2	19	84	8	52	40	4	4	50	1.43
1408205--1408244	18	2.2	18	95	0	71	50	7	17	25	1.72
1408952--1409007	26	2.1	27	86	3	78	78	3	14	3	1.02
1408952--1409016	27	2.5	26	84	2	76	78	3	13	4	1.03
1409209--1409275	31	2.1	31	86	2	89	38	8	14	37	1.78
1409268--1409587	33	9.8	33	70	4	155	34	18	18	29	1.94
1409282--1409454	66	2.6	66	86	0	229	34	19	17	28	1.95
1409429--1409546	31	3.7	31	69	12	87	33	11	22	33	1.89
1409636--1409709	24	3.2	23	64	21	55	33	16	10	39	1.83
1409616--1409828	46	4.6	46	82	1	237	36	12	9	41	1.75
1409616--1409819	93	2.2	92	83	2	257	36	12	8	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409987--1410064	21	3.8	20	70	13	61	78	12	5	3	1.06
1409988--1410060	27	2.5	29	78	17	80	78	13	4	4	1.05
1409987--1410067	20	4.1	19	72	21	67	77	13	4	3	1.06
1412560--1412602	23	1.9	22	90	4	68	79	2	2	16	0.95
1414811--1414842	16	2.0	16	93	0	55	40	12	15	31	1.85
1419717--1419748	3	10.3	3	93	6	55	34	0	0	65	0.93
1422735--1422794	28	2.1	29	96	3	113	45	3	3	48	1.35
1422781--1422824	18	2.4	18	92	0	70	52	2	2	43	1.26
1422922--1422949	14	2.0	14	100	0	56	57	0	0	42	0.99
1424218--1424304	40	2.2	40	97	0	165	51	11	3	33	1.55
1424828--1425405	301	1.9	301	93	1	998	39	9	8	42	1.67
1426350--1426391	13	3.0	13	83	16	57	64	2	0	33	1.07
1427310--1427343	10	3.5	10	84	8	52	70	0	8	20	1.13
1427310--1427348	19	2.1	19	95	0	69	66	0	12	20	1.24
1427610--1427768	79	2.0	79	98	0	309	41	18	7	32	1.78
1431603--1431666	20	3.3	20	89	6	96	35	4	21	37	1.75
1444780--1444821	21	2.0	20	86	13	59	21	2	7	69	1.25
1447572--1447613	8	5.2	8	83	11	59	0	11	2	85	0.68
1452673--1452718	24	1.9	24	86	0	65	13	10	2	73	1.17
1458434--1458491	16	3.4	16	80	17	64	65	3	10	20	1.38
1459032--1459278	43	5.7	43	81	3	273	43	15	14	26	1.85
1459025--1459278	86	3.0	85	82	7	307	42	16	14	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1459046--1459278	129	1.8	129	87	0	349	42	15	14	27	1.86
1463700--1463745	21	2.1	23	84	8	60	63	0	21	15	1.31
1464753--1464827	26	2.9	27	88	4	109	14	25	24	36	1.93
1464765--1464827	27	2.4	27	89	2	101	15	23	26	33	1.95
1464976--1465034	3	19.7	3	85	13	77	27	3	1	67	1.16
1464976--1465028	21	2.5	21	96	0	97	26	3	1	67	1.17
1465952--1465996	18	2.4	19	85	7	65	68	0	2	28	1.01
1465968--1465995	10	2.8	10	100	0	56	71	0	0	28	0.86
1470086--1470157	38	2.0	37	83	8	94	38	6	8	45	1.61
1477252--1477654	104	3.9	104	87	1	558	35	15	16	33	1.90
1479287--1479337	8	6.2	8	84	6	50	1	13	1	82	0.85
1479310--1479343	9	3.8	9	96	0	59	0	23	0	76	0.79
1479722--1479821	6	17.0	6	72	15	50	5	12	5	78	1.08
1479800--1479876	25	3.0	25	75	11	75	5	25	0	68	1.10
1480184--1480223	21	1.9	21	89	0	62	5	2	20	72	1.15
1480319--1480394	30	2.6	28	76	17	75	1	22	1	75	0.96
1483396--1483476	38	2.2	37	82	6	92	34	9	20	34	1.86
1484266--1484374	20	5.7	19	73	14	91	48	12	4	33	1.62
1484266--1484380	18	6.0	20	72	17	93	49	12	4	33	1.60
1484503--1484550	25	2.0	24	91	4	78	50	12	4	33	1.59
1484501--1484556	24	2.3	24	84	6	78	55	10	3	30	1.51
1484558--1484787	56	4.2	56	74	12	183	53	10	4	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1484765--1484807	23	1.9	22	90	4	68	55	11	4	27	1.55
1484800--1484855	22	2.6	22	78	15	64	55	7	5	32	1.50
1484830--1484877	14	3.2	14	78	16	60	60	4	4	31	1.35
1484813--1484870	17	3.7	15	76	15	64	55	6	5	32	1.49
1484822--1484885	31	2.1	31	90	0	101	54	10	6	28	1.59
1485764--1485942	38	4.9	37	76	11	181	40	24	11	23	1.88
1485945--1486215	42	6.5	43	81	7	299	39	19	12	28	1.88
1487671--1487700	15	2.0	15	93	0	51	10	3	6	80	1.01
1491543--1491592	26	1.9	26	84	8	66	28	6	10	56	1.56
1491818--1491861	17	2.6	17	82	10	54	20	0	2	77	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64