genome.fa.s224.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  37  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5772808--5772856	20	2.5	19	83	9	62	65	0	0	34	0.93
5777917--5777968	26	2.0	26	85	7	70	46	5	1	46	1.38
5778132--5778161	8	3.8	8	100	0	60	60	0	0	40	0.97
5779237--5779280	22	1.9	24	81	9	56	29	11	4	54	1.56
5780301--5780353	21	2.5	21	75	0	52	26	9	5	58	1.52
5786656--5786696	21	2.0	21	85	0	55	46	2	7	43	1.44
5786979--5787033	28	2.0	28	82	7	67	36	10	1	50	1.48
5793534--5793568	16	2.2	16	94	0	61	34	11	11	42	1.77
5798150--5799411	417	3.0	421	77	11	1147	54	9	8	28	1.61
5809071--5809100	2	15.0	2	100	0	60	50	0	0	50	1.00
5808986--5809160	89	2.0	89	97	0	332	42	13	6	38	1.69
5809374--5809422	19	2.8	18	81	12	57	65	4	0	30	1.11
5810728--5810795	34	2.0	35	85	2	93	44	5	10	39	1.63
5810776--5810851	34	2.2	34	80	0	89	38	2	5	53	1.37
5811384--5811440	19	2.8	20	82	14	73	36	0	0	63	0.95
5814513--5814568	27	2.1	27	89	0	85	25	19	16	39	1.91
5817926--5817968	9	4.8	9	76	0	50	65	11	2	20	1.36
5817931--5817989	24	2.4	25	83	5	68	64	15	1	18	1.37
5823471--5823515	20	2.2	20	84	0	54	62	0	2	35	1.08
5824199--5824236	20	1.9	20	94	0	67	65	0	10	23	1.23
5824271--5824344	34	2.3	31	84	9	87	54	1	2	41	1.23
5839027--5839087	31	2.0	31	90	3	97	14	14	4	65	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5842287--5842326	20	2.1	19	85	4	53	35	0	0	65	0.93
5851408--5851892	242	2.0	242	93	0	837	28	18	15	37	1.92
5851650--5852623	359	2.7	359	92	0	1626	30	17	14	37	1.90
5864731--5864774	23	1.9	23	81	9	54	22	20	27	29	1.99
5873162--5873220	25	2.4	26	94	5	97	38	3	10	47	1.54
5873679--5873728	20	2.4	22	87	9	70	48	0	2	50	1.12
5873991--5874033	18	2.4	17	77	11	50	60	0	0	39	0.97
5874821--5874858	17	2.1	18	85	9	51	44	0	5	50	1.24
5876691--5876734	23	1.9	23	95	0	79	29	6	6	56	1.51
5876860--5876892	17	1.9	17	88	11	50	84	0	3	12	0.72
5876836--5876891	29	2.0	29	85	3	78	76	0	7	16	0.99
5876817--5876892	6	11.8	6	71	25	50	76	1	5	17	1.04
5877182--5877245	20	3.3	20	75	12	62	46	9	3	40	1.52
5878756--5878977	34	6.5	35	68	11	129	36	10	16	36	1.83
5878756--5878983	17	13.3	17	68	10	79	36	10	16	36	1.83
5878791--5878988	68	2.9	68	82	5	256	38	10	15	36	1.81
5878893--5879005	35	3.3	35	75	7	122	38	7	13	40	1.74
5878756--5879002	69	3.6	69	80	5	277	37	10	14	37	1.81
5878900--5878989	17	5.2	17	77	7	101	40	7	13	38	1.73
5878883--5879024	69	2.1	69	82	0	167	40	9	14	35	1.80
5880013--5880079	34	1.9	35	81	3	82	2	14	7	74	1.16
5880012--5880079	35	1.9	35	82	5	84	2	14	7	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5884058--5884098	17	2.3	18	87	8	57	29	0	12	58	1.34
5884143--5884201	25	2.4	25	81	13	79	25	1	8	64	1.31
5884328--5884375	19	2.6	18	77	12	53	75	2	8	14	1.13
5884667--5884704	19	2.0	19	85	10	51	47	10	2	39	1.52
5887254--5887296	13	3.2	14	81	18	56	53	0	0	46	1.00
5892793--5892830	18	2.0	20	85	10	53	76	2	18	2	1.02
5894938--5895023	43	2.1	40	81	14	97	48	8	0	43	1.32
5895169--5895239	33	2.2	33	94	0	124	43	5	4	46	1.46
5895319--5895379	32	1.9	32	83	9	81	26	6	11	55	1.59
5897137--5897171	18	2.0	17	88	5	52	60	0	14	25	1.35
5897954--5898000	19	2.5	19	75	6	51	55	12	6	25	1.61
5898061--5898119	26	2.2	26	76	8	66	54	6	5	33	1.49
5898250--5898295	12	3.9	12	82	5	58	41	0	2	56	1.11
5898250--5898280	6	5.2	6	92	0	53	45	0	0	54	0.99
5898456--5898490	18	1.9	18	88	0	52	48	2	8	40	1.49
5899500--5899547	25	2.0	25	84	8	64	66	2	0	31	1.03
5906022--5906064	12	3.6	12	80	0	50	9	2	20	67	1.30
5914202--5914514	62	5.1	60	76	5	261	36	8	6	48	1.59
5916087--5916129	17	2.6	17	92	3	70	74	0	4	20	1.00
5916317--5916416	44	2.2	46	84	5	134	44	10	17	29	1.81
5916725--5916956	114	2.0	114	93	0	392	37	15	14	32	1.88
5917016--5917071	20	2.7	21	83	2	69	37	14	8	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5917105--5917149	20	2.2	20	84	0	54	31	13	11	44	1.78
5916976--5917191	78	2.7	78	82	4	254	34	17	10	37	1.85
5917172--5917528	137	2.6	138	88	1	520	37	12	10	39	1.78
5917172--5917584	46	9.0	46	87	3	517	36	12	10	40	1.77
5918660--5918721	15	3.9	15	84	12	79	1	20	0	77	0.85
5918661--5918722	16	3.8	17	84	14	78	1	20	0	77	0.85
5918661--5918722	33	1.9	32	90	3	97	1	20	0	77	0.85
5918666--5918734	16	4.2	16	83	9	68	4	18	0	76	0.94
5922558--5922829	120	2.3	118	82	5	311	36	12	5	44	1.67
5922605--5922829	60	3.7	63	78	9	182	36	12	4	46	1.62
5924423--5924464	21	1.9	23	90	9	70	71	4	4	19	1.22
5924413--5924437	6	4.2	6	100	0	50	84	0	0	16	0.63
5938781--5938824	21	2.1	21	83	8	54	38	2	2	56	1.24
5939234--5939285	25	2.1	25	89	7	79	44	1	5	48	1.38
5939278--5939520	129	1.9	132	82	7	309	43	4	8	43	1.56
5939509--5939559	24	2.2	24	89	10	79	39	0	13	47	1.43
5939509--5939559	23	2.2	23	89	10	77	39	0	13	47	1.43
5946763--5946798	3	12.0	3	100	0	72	66	0	0	33	0.92
5946794--5946822	15	1.9	15	100	0	58	41	0	24	34	1.55
5947474--5947825	177	2.0	176	83	3	449	37	7	21	33	1.82
5954423--5954465	4	10.5	4	90	5	50	18	0	6	74	1.04
5954922--5955030	53	2.0	54	84	5	141	43	5	16	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5955990--5956027	5	7.6	5	100	0	76	42	0	0	57	0.98
5956219--5956358	61	2.3	59	80	10	149	35	17	7	39	1.78
5956261--5956378	61	2.0	60	86	5	166	35	16	7	40	1.77
5956285--5956414	61	2.1	61	80	5	138	39	16	6	37	1.75
5956595--5956642	16	3.1	16	77	17	55	50	10	2	37	1.49
5957009--5957064	16	3.2	18	73	19	55	55	5	0	39	1.23
5957913--5957972	20	3.0	20	83	11	79	63	0	0	36	0.95
5958013--5958071	2	29.5	2	80	0	64	40	1	6	50	1.39
5958013--5958072	18	3.3	18	83	0	75	40	1	8	50	1.43
5958932--5958963	16	1.9	17	93	6	57	71	0	0	28	0.86
5959459--5959526	21	3.2	20	77	20	68	76	0	2	20	0.92
5959455--5959521	35	1.9	35	87	6	100	74	0	4	20	0.99
5960556--5960580	7	3.6	7	100	0	50	60	0	0	40	0.97
5960978--5961027	19	2.6	20	87	6	68	38	4	6	52	1.45
5961962--5962050	31	2.9	31	77	1	99	41	8	7	41	1.65
5962946--5962992	13	3.5	14	83	13	55	51	0	4	44	1.21
5962968--5963039	23	3.0	24	78	15	78	52	1	6	38	1.37
5963060--5963116	9	6.1	9	81	6	60	52	1	1	43	1.21
5963070--5963116	19	2.5	19	85	0	58	55	2	2	40	1.24
5963132--5963193	31	2.0	31	87	0	88	40	9	12	37	1.77
5970222--5970258	14	2.4	16	82	17	51	40	0	2	56	1.13
5970226--5970258	16	2.2	15	89	10	50	42	0	3	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5970301--5970383	34	2.5	35	80	9	93	40	1	8	49	1.41
5970667--5970693	1	27.0	1	100	0	54	100	0	0	0	0.00
5973561--5973586	10	2.6	10	100	0	52	84	0	0	15	0.62
5974163--5974212	24	2.0	26	84	7	68	46	2	4	48	1.32
5976519--5976562	23	1.9	23	85	0	61	36	25	13	25	1.92
5978315--5978370	28	2.0	28	83	13	71	41	5	0	53	1.24
5978826--5978896	28	2.6	27	77	18	74	71	1	22	4	1.11
5979765--5979898	7	20.0	7	70	19	56	54	1	0	44	1.09
5979821--5979864	15	2.8	17	80	16	58	54	2	0	43	1.12
5979836--5979891	21	2.8	20	86	5	69	55	1	0	42	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64