genome.fa.s224.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  25  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3713281--3713358	41	1.9	42	85	12	110	60	5	5	29	1.40
3713457--3713522	6	10.2	6	77	18	62	78	3	1	16	0.95
3713457--3713522	13	5.1	12	79	17	62	78	3	1	16	0.95
3713421--3713522	20	5.2	19	73	20	77	74	2	2	19	1.08
3713428--3713524	27	3.6	27	71	13	83	76	3	2	18	1.02
3717271--3717706	66	6.8	64	78	6	339	39	10	11	38	1.76
3717271--3717723	128	3.5	126	79	8	457	40	10	11	37	1.76
3718699--3718732	11	3.0	11	87	8	50	82	0	17	0	0.67
3719764--3719824	7	9.4	7	76	16	51	45	42	0	11	1.40
3720329--3720353	11	2.3	11	100	0	50	52	0	16	32	1.44
3720864--3720989	60	2.1	62	89	3	193	52	6	5	35	1.50
3721009--3721063	25	2.2	25	93	0	92	23	12	10	52	1.71
3722130--3722218	37	2.4	37	81	3	99	37	17	11	33	1.86
3726215--3726246	16	1.9	16	93	6	55	87	0	12	0	0.54
3728048--3728123	33	2.3	32	82	6	91	21	7	21	50	1.74
3728083--3728236	56	2.7	56	91	1	245	21	16	21	40	1.91
3728361--3728412	24	2.2	24	82	3	61	21	9	25	44	1.82
3732461--3732504	14	3.1	14	81	15	54	59	31	0	9	1.29
3732481--3732557	7	12.0	7	70	21	53	42	41	1	14	1.53
3732492--3732538	19	2.5	20	86	10	71	42	44	0	12	1.42
3732476--3732555	12	6.3	12	77	13	56	45	41	1	12	1.50
3734786--3735049	20	12.7	20	74	11	201	32	4	10	52	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3734824--3735049	41	5.4	41	82	2	254	31	4	11	51	1.59
3735059--3735156	28	3.8	26	68	24	75	26	4	11	58	1.51
3735133--3735176	19	2.3	19	84	4	52	31	4	9	54	1.52
3735286--3735343	20	2.9	20	94	0	98	20	6	17	55	1.65
3735378--3735438	8	7.6	8	76	7	61	39	0	6	54	1.27
3735375--3735484	3	38.0	3	77	12	97	36	1	3	58	1.26
3735473--3735506	18	1.9	17	88	5	50	35	5	8	50	1.58
3738720--3738795	38	2.0	38	84	2	100	30	30	10	28	1.90
3739410--3739444	16	2.2	16	89	0	52	40	5	14	40	1.69
3743746--3743903	71	2.2	71	88	5	239	25	21	16	36	1.94
3744757--3744825	26	2.7	26	88	0	93	21	10	31	36	1.87
3745059--3745366	104	3.0	100	84	4	352	41	8	10	40	1.69
3745584--3745622	16	2.4	17	83	12	55	35	0	10	53	1.35
3746727--3746958	116	2.0	116	87	1	331	39	17	5	37	1.73
3747365--3747415	25	2.1	24	85	3	66	68	1	9	19	1.27
3748997--3749038	18	2.4	18	84	4	50	54	14	4	26	1.59
3749266--3749318	18	3.1	18	75	10	65	43	15	13	28	1.84
3749331--3749385	17	3.3	17	76	5	67	52	12	12	21	1.72
3749329--3749413	33	2.5	34	83	9	111	52	10	11	24	1.69
3749329--3749435	34	3.2	34	82	6	119	47	9	13	29	1.73
3749329--3749417	17	5.3	17	65	2	63	52	10	11	25	1.68
3749432--3749474	17	2.6	17	81	3	52	41	6	13	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3755735--3755784	22	2.3	22	92	0	82	8	14	8	70	1.34
3756830--3756891	26	2.4	26	100	0	124	41	3	3	51	1.34
3760926--3761023	37	2.6	37	90	0	142	47	6	15	30	1.69
3766643--3766744	50	2.0	51	84	1	134	55	0	10	32	1.41
3778377--3778466	34	2.4	39	85	12	118	70	14	0	15	1.18
3783762--3783803	21	1.9	21	90	9	66	50	0	0	50	1.00
3788068--3788154	44	2.0	44	93	0	147	18	25	12	43	1.85
3789796--3789837	14	3.1	14	90	10	61	42	0	0	57	0.99
3790590--3790624	17	2.1	16	89	5	52	62	11	2	22	1.41
3796405--3796442	5	7.6	5	82	11	51	0	15	0	84	0.63
3796404--3796442	20	2.0	20	90	10	62	0	15	0	84	0.62
3796597--3796621	3	8.3	3	100	0	50	68	0	0	32	0.90
3799470--3799506	19	1.9	19	88	0	56	16	13	29	40	1.86
3799722--3799800	41	1.9	42	84	2	106	26	1	1	70	1.02
3801334--3801375	20	2.1	20	86	0	57	19	2	7	71	1.20
3806883--3806915	17	1.9	17	93	0	57	54	12	9	24	1.66
3807592--3807641	21	2.4	20	80	9	55	26	16	28	30	1.96
3814955--3815013	29	2.0	29	90	0	91	45	5	8	40	1.56
3815254--3815288	11	3.2	11	83	0	52	28	5	11	54	1.59
3815254--3815305	22	2.4	22	86	0	68	32	5	13	48	1.66
3815449--3815588	70	2.0	70	84	0	181	49	9	7	33	1.64
3817861--3817885	13	1.9	13	100	0	50	12	0	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3817950--3817984	17	2.0	18	88	5	54	65	2	8	22	1.34
3822589--3822665	39	2.0	39	94	0	136	25	7	14	51	1.68
3822835--3822861	3	9.0	3	100	0	54	33	0	0	66	0.92
3823768--3824362	96	6.5	93	70	16	320	52	5	4	38	1.43
3823860--3824104	81	2.9	82	76	10	217	50	4	4	40	1.44
3823761--3824104	177	2.0	175	83	6	446	51	5	4	39	1.43
3823943--3824362	188	2.3	182	82	6	506	51	4	4	39	1.42
3824354--3824415	30	2.2	30	80	13	78	59	1	1	37	1.17
3824051--3824454	183	2.2	176	78	10	425	53	3	3	39	1.37
3824496--3824525	15	2.0	15	93	0	51	60	3	0	36	1.14
3825142--3825237	44	2.2	44	86	3	140	39	4	3	53	1.36
3825979--3826049	13	6.0	13	69	20	57	42	1	16	39	1.57
3826011--3826070	25	2.3	26	80	8	70	48	3	8	40	1.50
3826140--3826209	31	2.3	30	92	4	115	44	8	8	38	1.66
3826140--3826223	31	2.8	31	85	3	100	41	9	10	38	1.73
3830200--3830254	27	2.1	27	86	3	76	74	9	5	10	1.21
3831052--3831110	31	1.9	31	86	6	84	52	0	18	28	1.46
3831052--3831117	31	2.1	31	83	5	80	54	0	18	27	1.44
3836714--3836743	16	1.9	15	93	6	51	73	6	6	13	1.24
3837178--3837209	6	5.7	6	85	14	50	0	18	15	65	1.27
3844577--3844662	43	2.0	43	100	0	172	27	16	20	34	1.94
3849007--3849042	7	5.3	7	86	6	56	11	13	13	61	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3851257--3851291	16	2.2	16	94	0	61	31	14	11	42	1.81
3854592--3856648	161	12.9	160	78	7	1136	33	10	14	41	1.81
3854869--3855165	143	2.1	143	89	0	450	33	11	13	42	1.79
3855017--3856648	160	10.2	161	80	5	1500	32	10	15	41	1.81
3855017--3856648	320	5.1	319	81	5	1747	32	10	15	41	1.81
3857871--3857948	41	1.9	41	81	5	95	42	16	8	32	1.79
3858150--3858211	31	2.0	30	84	9	81	37	12	12	37	1.82
3859214--3859251	20	1.9	20	84	10	51	42	21	0	36	1.53
3859792--3859844	17	3.1	16	79	15	52	54	1	0	43	1.11
3861691--3861794	34	3.1	34	77	2	120	52	11	16	19	1.73
3861694--3861825	33	4.0	33	80	3	133	52	14	15	17	1.75
3862132--3862211	33	2.5	33	77	2	81	43	10	27	18	1.82
3864135--3864159	11	2.3	11	100	0	50	0	8	0	92	0.40
3868228--3868289	27	2.3	27	82	2	70	27	8	0	64	1.21
3869822--3869873	27	1.9	27	84	7	70	15	9	5	69	1.35
3871521--3871595	38	1.9	39	91	2	125	25	10	5	58	1.52
3871421--3872845	747	1.9	747	81	5	1693	34	13	14	37	1.85
3877521--3877611	33	2.8	33	86	3	121	56	4	8	30	1.50
3882519--3882568	22	2.2	23	85	3	66	62	0	0	38	0.96
3882526--3882570	15	3.1	15	81	15	58	55	0	0	44	0.99
3887001--3887051	11	4.8	11	80	7	61	78	0	17	3	0.90
3887001--3887051	21	2.4	21	84	12	61	78	0	17	3	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3891472--3891582	54	2.1	54	96	0	204	44	18	12	25	1.84
3894088--3894137	21	2.5	20	80	6	55	70	2	24	4	1.15
3896347--3896391	17	2.6	17	80	10	56	35	2	6	55	1.38
3897845--3897879	2	17.5	2	93	0	61	0	0	51	48	1.00
3899517--3900697	632	1.9	617	84	6	1565	41	7	9	41	1.65
3900828--3900854	10	2.7	10	100	0	54	48	11	0	40	1.39
3901520--3901549	2	15.0	2	92	0	51	50	3	0	46	1.18
3909096--3910348	322	3.9	320	80	2	1194	43	15	8	32	1.77
3909096--3910348	483	2.6	479	80	4	1385	43	15	8	32	1.77
3909096--3910348	161	7.8	160	80	4	1085	43	15	8	32	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64