genome.fa.s224.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  29  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4478518--4478565	5	9.8	5	80	11	55	81	2	2	14	0.88
4478515--4478566	18	3.1	17	86	8	70	80	1	3	13	0.93
4478502--4478565	16	3.9	16	78	13	60	78	3	3	15	1.01
4479468--4479525	3	19.3	3	83	0	71	58	1	3	36	1.25
4480104--4480319	86	2.5	86	82	3	247	39	15	16	28	1.89
4480104--4480359	86	3.0	86	80	4	239	39	15	15	29	1.89
4480458--4480668	69	3.1	67	70	6	172	36	12	19	32	1.89
4480422--4480591	86	2.0	86	82	2	207	40	12	18	28	1.87
4480206--4480607	223	1.8	222	79	5	470	39	13	17	30	1.88
4480465--4480745	138	2.0	138	85	4	379	36	12	19	31	1.89
4480674--4480841	69	2.5	68	86	5	223	40	10	19	29	1.85
4481587--4481673	28	3.0	28	83	9	79	1	21	1	75	0.93
4481610--4481674	18	3.6	18	74	22	55	1	16	0	81	0.77
4481617--4481695	7	11.1	7	82	6	97	1	13	2	82	0.84
4481612--4481726	44	2.6	44	80	8	126	3	16	2	77	1.02
4481621--4481691	37	1.9	37	88	0	106	1	14	2	81	0.87
4481636--4481692	30	1.9	29	85	3	78	1	14	3	80	0.92
4484602--4484633	15	2.1	15	100	0	64	43	6	31	18	1.75
4485889--4485950	6	9.7	6	76	23	56	79	1	3	16	0.95
4485893--4485950	12	4.4	13	85	12	66	79	1	3	15	0.95
4485873--4485950	19	3.9	18	77	21	68	78	1	5	15	0.99
4486817--4486851	3	11.7	3	93	0	61	65	2	0	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4493479--4493503	13	1.9	13	100	0	50	8	12	0	80	0.92
4493487--4493548	7	8.7	7	94	3	97	11	14	0	74	1.08
4495672--4495748	19	4.0	19	75	22	72	20	0	32	46	1.51
4495940--4496000	13	4.8	13	70	8	54	11	0	32	55	1.36
4496541--4496590	17	3.1	16	73	21	50	60	0	16	24	1.36
4497264--4497564	142	2.1	142	81	7	344	42	11	10	35	1.76
4499123--4499173	19	2.9	18	81	16	63	52	1	0	45	1.12
4502597--4502720	52	2.4	52	89	2	178	28	24	9	37	1.87
4502776--4502818	22	2.0	22	90	9	70	48	27	0	23	1.51
4502776--4502817	11	3.8	11	87	6	59	50	28	0	21	1.49
4503028--4503118	25	3.7	25	73	2	78	25	35	7	31	1.84
4503144--4503275	31	4.3	31	92	3	221	22	23	24	29	1.99
4503761--4503884	52	2.4	52	89	2	178	28	24	9	37	1.87
4503940--4503982	22	2.0	22	90	9	70	48	27	0	23	1.51
4503940--4503981	11	3.8	11	87	6	59	50	28	0	21	1.49
4504738--4504775	17	2.2	17	86	9	51	31	0	0	68	0.90
4506640--4506682	13	3.2	13	78	15	52	48	9	2	39	1.48
4509068--4509132	33	2.0	33	84	6	87	33	4	26	35	1.77
4509479--4509521	6	7.2	6	86	0	50	30	44	0	25	1.55
4513170--4513210	20	2.0	20	85	0	55	70	7	0	21	1.11
4513506--4513568	20	3.1	20	82	8	65	19	61	1	17	1.42
4517602--4517645	23	1.9	23	95	0	79	43	11	20	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4518187--4518220	16	2.1	16	89	10	52	82	2	2	11	0.89
4520050--4520129	39	2.1	39	87	0	115	18	7	30	43	1.78
4525182--4525262	42	1.9	42	92	0	135	41	9	12	35	1.76
4528377--4528451	23	3.2	23	98	1	141	53	0	1	45	1.08
4528377--4528483	46	2.3	46	84	12	132	51	0	2	44	1.22
4538991--4539015	2	12.5	2	100	0	50	0	0	48	52	1.00
4544713--4544753	21	2.0	21	85	9	57	51	9	0	39	1.35
4552228--4552263	17	2.1	18	94	5	65	47	11	11	30	1.74
4554763--4554816	25	2.2	25	83	12	67	50	0	0	50	1.00
4554784--4554826	22	2.0	21	90	4	68	46	2	0	51	1.13
4554845--4554894	26	1.9	26	83	0	64	54	4	0	42	1.19
4555182--4555232	25	2.1	24	85	3	66	62	0	0	37	0.95
4561300--4561343	6	7.0	6	97	2	70	47	0	0	52	1.00
4561309--4561352	18	2.4	18	84	0	61	45	2	0	52	1.13
4565416--4565464	23	2.1	23	96	0	89	46	10	12	30	1.74
4566626--4566663	3	12.7	3	100	0	76	31	0	0	68	0.90
4568273--4568302	14	2.1	14	100	0	60	33	13	40	13	1.83
4573366--4573410	3	15.0	3	100	0	90	33	0	0	66	0.92
4573723--4573760	18	2.1	19	85	14	53	36	2	0	60	1.11
4575298--4575347	24	2.2	23	89	7	75	32	0	2	66	1.03
4575996--4576095	31	3.2	30	74	4	92	52	9	3	36	1.49
4576014--4576114	31	3.3	31	71	6	89	51	6	2	38	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4576368--4576427	32	1.9	32	93	3	104	43	1	6	48	1.39
4576437--4576592	77	2.0	78	93	3	271	49	2	2	45	1.29
4576526--4576583	21	2.9	21	80	7	68	55	0	0	44	0.99
4576857--4576901	21	2.2	21	88	7	67	46	0	2	51	1.13
4579364--4579388	10	2.5	10	100	0	50	64	0	8	28	1.22
4579372--4579444	33	2.2	31	77	17	76	47	0	1	50	1.09
4579440--4579478	12	3.2	12	82	7	51	64	2	0	33	1.08
4579424--4579463	20	2.0	19	85	9	53	52	0	0	47	1.00
4582621--4582650	15	2.0	15	93	0	51	26	23	13	36	1.92
4583805--4583857	27	2.0	27	84	0	70	58	0	0	41	0.98
4584016--4584082	12	5.6	12	68	19	50	28	0	5	65	1.16
4585877--4586024	43	3.4	43	95	0	260	27	19	16	37	1.93
4590328--4590376	19	2.6	19	81	12	64	34	12	16	36	1.86
4595150--4595224	34	2.2	34	97	0	141	26	14	8	50	1.70
4595150--4595205	18	3.2	18	66	19	55	26	14	7	51	1.67
4598648--4598698	18	2.7	19	75	6	50	66	0	5	27	1.14
4598794--4598839	20	2.2	22	85	14	62	56	4	2	36	1.31
4604408--4604442	15	2.3	16	85	14	56	25	5	22	45	1.74
4605488--4606397	159	5.8	159	74	7	756	41	17	6	34	1.75
4608058--4608140	43	1.9	43	87	0	121	33	16	16	32	1.92
4612036--4612077	13	3.2	13	89	0	57	23	7	16	52	1.68
4612084--4612150	33	2.1	32	88	2	98	53	13	5	26	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4612084--4612150	32	2.1	33	88	8	102	53	13	5	26	1.62
4625296--4625353	3	19.3	3	100	0	116	32	0	0	67	0.91
4638126--4638177	24	2.2	24	92	0	86	42	0	0	57	0.98
4638158--4638197	18	2.2	18	86	0	53	40	0	0	60	0.97
4638132--4638190	24	2.5	24	88	5	84	44	0	0	55	0.99
4638694--4638724	16	2.0	15	93	6	53	64	0	0	35	0.94
4639898--4639928	15	2.1	15	94	5	55	87	0	0	12	0.55
4641022--4641074	21	2.5	20	82	11	61	67	3	0	28	1.07
4641139--4641186	22	2.2	22	88	3	71	12	12	35	39	1.81
4641913--4642301	193	2.0	194	88	4	572	36	14	11	36	1.84
4642899--4642941	15	2.9	15	83	13	54	72	0	0	27	0.85
4643012--4643068	30	1.9	30	88	0	87	7	21	40	31	1.80
4643109--4643133	12	2.1	12	100	0	50	0	16	60	24	1.36
4644551--4645408	46	18.4	46	87	4	1143	34	24	14	27	1.94
4644551--4645408	93	9.2	92	88	3	1200	34	24	14	27	1.94
4644551--4645408	139	6.1	138	87	4	1184	34	24	14	27	1.94
4651630--4652015	193	2.0	194	87	5	568	36	16	11	36	1.85
4653309--4653372	27	2.3	28	82	10	78	9	9	9	71	1.30
4654178--4654231	13	4.2	12	77	13	54	1	5	9	83	0.88
4654573--4654770	48	3.9	51	78	7	188	39	16	13	30	1.87
4654573--4654767	52	3.8	51	77	8	175	40	15	13	30	1.86
4654573--4654767	100	1.9	103	81	5	236	40	15	13	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4654967--4655538	297	1.9	295	82	3	702	41	21	13	23	1.89
4654967--4655552	99	5.9	99	81	1	593	41	20	13	23	1.88
4655488--4655797	126	2.5	126	82	0	350	41	20	10	26	1.85
4655488--4655794	42	7.3	42	78	1	283	41	20	10	27	1.85
4656002--4656106	35	3.0	35	87	4	142	39	11	14	35	1.82
4657006--4657038	12	2.5	14	90	9	52	3	6	3	87	0.71
4662436--4662480	24	2.0	23	82	8	56	71	2	0	26	0.98
4662421--4662476	29	2.0	27	83	13	69	69	1	0	28	0.98
4663526--4663550	11	2.3	11	100	0	50	84	0	0	16	0.63
4663519--4663552	16	2.1	17	94	5	61	79	2	0	17	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64