genome.fa.s224.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  38  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5979770--5979891	19	6.5	18	75	19	90	54	0	0	44	1.05
5980165--5980230	23	2.9	22	75	22	64	50	3	0	46	1.16
5980200--5980255	19	3.0	20	78	14	59	50	7	0	42	1.30
5982610--5982660	24	2.1	24	82	7	59	52	0	1	45	1.12
5985457--5985636	15	11.9	15	66	12	64	17	2	31	48	1.60
5985443--5985558	53	2.2	52	81	7	137	18	2	29	50	1.60
5985510--5985591	22	3.7	22	75	12	69	18	1	30	50	1.55
5985598--5985677	30	2.7	29	78	3	79	23	2	26	47	1.64
5985625--5985684	15	4.0	15	74	8	59	26	3	21	48	1.66
5985656--5985771	8	14.4	8	69	18	80	22	0	27	50	1.50
5985671--5985797	16	7.8	16	78	11	98	18	0	31	48	1.54
5985671--5985782	24	4.6	24	78	12	122	20	0	30	49	1.49
5985815--5985922	53	2.0	54	84	10	143	23	2	25	48	1.64
5992732--5992914	67	2.8	66	79	8	194	38	10	11	39	1.76
5992751--5992949	67	3.1	65	81	7	201	42	8	10	38	1.69
5995876--5995902	2	13.5	2	100	0	54	0	0	48	51	1.00
5997796--5997999	62	3.3	60	76	9	178	38	10	14	36	1.81
5998202--5998612	210	1.9	212	83	5	539	36	12	17	34	1.87
6000378--6000435	21	2.8	21	75	0	71	17	17	20	44	1.86
6002560--6002658	50	2.0	49	84	7	130	36	15	15	33	1.88
6003445--6003595	56	2.6	56	82	7	162	33	11	7	47	1.68
6003772--6003815	9	5.1	8	86	8	52	79	0	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6003781--6003813	17	1.9	17	88	11	50	78	0	0	21	0.75
6004162--6004202	20	2.0	21	85	4	57	43	17	19	19	1.88
6004275--6004304	11	2.9	10	90	9	51	50	13	0	36	1.42
6005578--6005612	15	2.3	15	85	0	52	48	0	22	28	1.51
6008769--6008927	62	2.6	61	78	9	162	37	12	6	43	1.70
6012019--6012160	62	2.3	62	86	7	191	40	9	14	35	1.77
6012119--6012208	47	1.9	47	90	0	144	36	8	18	35	1.83
6018717--6019579	161	5.4	160	80	5	839	32	9	16	41	1.81
6020284--6020329	21	2.2	21	84	0	56	45	13	26	15	1.82
6020775--6020808	17	2.0	17	88	0	50	55	2	5	35	1.39
6020941--6021018	32	2.4	33	82	4	104	39	24	12	23	1.89
6021541--6021574	16	2.2	16	89	5	52	44	0	2	52	1.16
6021627--6021692	34	1.9	34	84	0	87	39	1	15	43	1.55
6021875--6021954	34	2.4	33	85	8	99	48	1	6	43	1.36
6028078--6028130	15	3.7	15	75	14	58	62	0	9	28	1.26
6030881--6030931	18	2.9	17	83	11	68	29	3	0	66	1.09
6030924--6030966	22	1.9	22	85	4	59	32	0	6	60	1.23
6031753--6031778	10	2.6	10	100	0	52	46	0	0	53	1.00
6039117--6039150	14	2.5	13	86	13	50	55	5	23	14	1.61
6043053--6043495	48	9.0	48	80	5	458	29	13	21	35	1.92
6043055--6043485	148	2.9	146	87	3	596	29	13	21	35	1.92
6043714--6043772	24	2.3	24	82	11	64	72	5	0	22	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6043728--6043761	17	2.0	17	94	0	59	76	2	0	20	0.92
6044815--6044839	13	1.9	13	100	0	50	72	4	0	24	1.02
6044818--6044884	29	2.2	31	87	12	95	73	5	0	20	1.04
6045049--6045091	18	2.4	18	84	7	52	65	2	4	27	1.25
6046148--6046216	19	3.7	19	78	14	72	52	0	1	46	1.09
6046352--6046385	17	2.0	17	100	0	68	47	5	5	41	1.52
6046548--6046590	18	2.4	18	88	7	61	55	0	0	44	0.99
6046526--6046581	22	2.5	22	78	16	62	48	0	1	50	1.11
6046697--6046746	26	1.9	26	91	0	82	60	6	0	34	1.21
6047055--6047081	14	1.9	14	100	0	54	37	7	3	51	1.48
6049775--6049811	19	2.1	17	90	10	56	51	0	8	40	1.32
6050097--6050127	16	1.9	16	93	0	53	35	3	22	38	1.71
6052306--6052358	26	2.1	25	92	3	88	32	1	0	66	1.03
6052324--6052388	33	1.9	34	87	3	96	24	4	3	67	1.24
6052328--6052481	56	2.5	62	79	11	185	29	5	2	62	1.30
6052368--6052477	22	5.0	22	73	14	95	32	6	1	59	1.33
6053280--6053313	17	2.0	17	88	11	52	29	2	2	64	1.22
6053334--6053365	16	1.9	17	93	6	57	15	9	0	75	1.05
6056748--6056778	15	2.1	15	93	0	53	19	16	6	58	1.59
6063974--6064051	24	3.3	24	83	5	88	71	1	17	8	1.18
6063979--6064044	12	5.2	13	74	20	59	72	1	18	7	1.15
6065063--6065391	41	8.0	41	77	10	262	27	14	18	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6065063--6065341	83	3.4	79	78	11	280	27	14	17	40	1.89
6065058--6065387	166	2.0	165	83	7	420	26	15	18	39	1.90
6065698--6065809	23	5.0	22	72	23	83	33	5	1	59	1.30
6065646--6065802	68	2.3	67	84	6	201	31	4	1	62	1.26
6065739--6065815	3	24.0	3	75	19	59	31	3	0	64	1.11
6066603--6066700	22	4.4	24	68	17	77	25	1	4	69	1.12
6066657--6066689	6	5.5	6	86	13	50	18	0	0	81	0.68
6066649--6066686	18	2.1	18	85	9	51	18	0	2	78	0.86
6066657--6066709	11	4.5	11	78	17	54	16	1	1	79	0.92
6066659--6066696	18	2.1	18	85	9	51	15	2	0	81	0.80
6066657--6066709	24	2.2	24	87	9	74	16	1	1	79	0.92
6066706--6066888	61	3.1	57	77	13	176	40	6	13	40	1.68
6066723--6066886	61	2.8	57	81	10	179	40	6	14	39	1.70
6067619--6067655	18	2.1	18	94	0	65	35	5	24	35	1.78
6067891--6067916	2	13.0	2	100	0	52	50	0	0	50	1.00
6067892--6068151	121	2.1	121	77	6	303	40	12	13	33	1.82
6071619--6071668	25	2.0	25	92	0	82	34	18	18	30	1.94
6082065--6082100	17	2.1	17	89	0	54	63	2	5	27	1.30
6090814--6090844	15	2.1	15	93	0	53	45	6	29	19	1.75
6094023--6094115	31	3.2	31	63	25	83	39	9	9	40	1.71
6093997--6094325	58	5.7	57	84	6	394	37	12	6	43	1.69
6094038--6094131	31	3.2	31	63	25	85	36	12	9	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6094337--6094379	19	2.2	19	88	12	61	81	0	6	11	0.87
6094342--6094382	13	3.3	13	90	6	59	82	0	4	12	0.81
6094342--6094408	6	11.5	6	76	13	61	80	2	2	13	0.94
6095273--6095490	42	5.1	41	77	13	126	65	1	4	28	1.21
6095303--6095542	4	60.8	4	67	19	73	66	2	3	27	1.21
6095303--6095495	14	13.4	14	73	16	114	65	2	3	29	1.21
6095305--6095495	42	4.7	41	77	13	166	64	2	3	29	1.22
6095305--6095408	22	5.0	22	81	10	137	62	0	4	31	1.22
6098653--6098686	15	2.2	16	94	5	61	35	0	0	64	0.94
6100457--6100515	27	2.2	27	78	6	66	40	0	1	57	1.09
6102527--6102583	30	1.9	30	88	0	87	38	8	33	19	1.82
6103114--6103138	3	8.3	3	100	0	50	32	0	0	68	0.90
6103132--6103175	21	2.1	21	82	0	52	18	6	0	75	1.02
6103144--6103184	21	1.9	22	90	5	66	7	12	0	80	0.90
6104116--6104159	21	2.1	21	86	0	61	29	0	2	68	1.02
6104689--6104738	17	2.7	20	84	12	70	62	8	0	30	1.24
6104689--6104744	17	3.0	18	80	17	69	62	8	0	28	1.25
6115744--6115791	6	7.8	6	77	13	53	83	2	2	12	0.83
6115737--6115799	20	3.3	19	80	12	67	80	3	4	11	0.97
6115737--6115791	13	4.4	13	80	15	62	83	3	1	10	0.84
6116706--6116928	49	4.5	48	86	8	281	26	11	21	40	1.87
6116695--6117060	50	7.8	48	78	10	282	28	11	18	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6116704--6116934	47	4.7	49	83	10	260	27	10	22	38	1.87
6116907--6117158	44	5.7	43	75	7	202	30	13	15	39	1.86
6116911--6117128	88	2.5	86	81	5	258	30	14	14	40	1.86
6117274--6117329	16	3.2	16	79	20	60	17	1	0	80	0.80
6118791--6118824	14	2.4	14	85	14	52	0	23	0	76	0.79
6118972--6119004	17	1.9	17	93	0	57	75	12	0	12	1.04
6121999--6122898	303	3.0	302	85	2	1144	34	14	14	36	1.86
6123016--6123085	35	2.0	35	82	0	86	34	18	14	32	1.91
6123820--6123869	20	2.5	21	80	6	59	60	6	6	28	1.44
6124414--6124447	8	4.4	8	92	7	61	11	0	8	79	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64