genome.fa.s212.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  10  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2815817--2815906	18	4.9	18	69	26	64	57	2	0	40	1.11
2815810--2815906	44	2.4	43	80	13	109	58	2	0	39	1.10
2816008--2816065	26	2.3	25	90	3	89	48	1	0	50	1.11
2822141--2822358	32	6.5	33	69	18	139	50	7	6	34	1.58
2822238--2822276	19	2.1	19	100	0	78	58	0	5	35	1.20
2822184--2822358	64	2.7	63	81	13	187	50	8	6	34	1.59
2822401--2822434	16	2.1	17	88	5	52	58	11	8	20	1.59
2822512--2822605	23	4.2	23	83	4	104	75	9	4	10	1.17
2822530--2822608	27	2.9	27	84	3	88	77	8	3	10	1.11
2822573--2822624	1	52.0	1	76	0	50	88	5	1	3	0.68
2822558--2822625	17	3.9	17	81	12	75	83	8	1	5	0.85
2828983--2829049	24	2.9	23	75	14	66	67	8	0	23	1.19
2830400--2830438	20	2.0	20	90	10	62	58	2	0	38	1.12
2831151--2831179	3	9.7	3	100	0	58	68	0	0	31	0.89
2835936--2836008	25	3.0	23	76	11	67	49	5	1	43	1.34
2842696--2842728	16	2.0	17	88	5	50	51	3	0	45	1.16
2844731--2844841	32	3.3	32	77	13	91	22	6	0	71	1.08
2844770--2844871	17	6.0	17	69	15	59	25	6	0	66	1.22
2844784--2844852	27	2.4	28	85	11	86	24	7	0	68	1.15
2845196--2845221	4	6.5	4	100	0	52	23	0	0	76	0.78
2845244--2845281	6	6.5	6	84	6	51	15	5	0	78	0.91
2845277--2845454	58	3.1	55	82	11	189	43	7	11	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2845299--2845454	59	2.7	58	87	6	217	43	6	12	37	1.69
2846901--2847007	52	2.1	52	80	0	115	36	17	6	39	1.76
2847474--2847536	28	2.2	30	82	5	76	42	1	1	53	1.19
2861297--2861337	2	20.5	2	100	0	82	0	51	0	48	1.00
2866518--2866545	3	9.3	3	100	0	56	67	0	0	32	0.91
2867549--2867604	29	2.0	28	86	10	78	39	10	5	44	1.62
2871176--2871266	41	2.2	43	90	4	150	23	25	19	31	1.98
2875392--2875466	25	3.0	25	98	0	141	49	4	10	36	1.56
2876437--2876475	13	3.0	13	89	10	62	61	0	0	38	0.96
2876976--2877006	14	2.1	15	94	5	55	41	0	0	58	0.98
2886704--2886748	2	22.5	2	100	0	90	0	51	0	48	1.00
2889477--2889629	76	2.0	75	91	1	243	44	18	7	29	1.78
2892971--2893039	3	23.3	3	85	2	95	30	2	2	63	1.23
2895124--2895149	3	8.7	3	100	0	52	69	0	0	30	0.89
2898419--2898445	2	13.5	2	100	0	54	48	0	0	51	1.00
2901925--2901969	20	2.2	20	100	0	90	53	0	0	46	1.00
2903773--2903819	14	3.8	13	76	18	55	51	0	0	48	1.00
2903767--2903805	14	2.7	14	88	4	51	48	0	0	51	1.00
2904470--2904506	14	2.8	14	88	8	51	54	5	0	40	1.24
2904559--2904595	14	2.5	15	83	16	51	29	5	0	64	1.15
2907528--2907568	7	5.9	7	100	0	82	0	26	29	43	1.55
2910357--2910387	2	16.0	2	93	6	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2910387--2910437	2	25.5	2	100	0	102	50	0	49	0	1.00
2915138--2915181	21	2.1	21	87	4	63	47	0	0	52	1.00
2915138--2915192	23	2.6	21	85	8	67	49	0	0	50	1.00
2915144--2915206	23	2.7	22	76	11	54	44	0	1	53	1.10
2922170--2922207	19	2.0	20	85	15	53	52	0	2	44	1.14
2923165--2924811	548	3.0	546	88	1	2352	31	17	29	21	1.96
2927008--2927032	1	25.0	1	100	0	50	100	0	0	0	0.00
2932904--2932983	34	2.5	30	79	14	97	42	16	13	27	1.86
2932914--2932981	34	2.0	34	91	0	109	42	17	13	26	1.86
2936983--2937007	2	12.5	2	100	0	50	0	52	0	48	1.00
2939107--2939137	14	2.2	14	100	0	62	41	0	6	51	1.27
2940294--2940412	58	2.1	58	90	0	184	40	8	16	34	1.79
2943428--2943461	7	4.9	7	92	0	59	29	17	26	26	1.98
2954697--2954731	18	1.9	18	88	0	52	42	8	8	40	1.66
2958295--2958377	42	2.0	42	97	0	157	48	9	12	30	1.72
2961210--2961239	6	5.0	6	95	0	51	13	0	53	33	1.40
2964727--2964777	27	1.9	26	84	11	68	37	0	5	56	1.23
2966617--2966661	21	2.1	21	88	8	65	48	0	0	51	1.00
2968293--2968321	2	14.5	2	100	0	58	51	0	0	48	1.00
2970656--2970781	63	2.0	62	95	0	207	30	9	11	47	1.72
2970655--2970763	32	3.4	32	80	12	152	31	9	10	49	1.68
2970814--2970877	26	2.6	24	80	9	67	31	3	4	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2970854--2970897	19	2.3	19	88	4	61	34	4	6	54	1.47
2971042--2971133	20	4.9	18	77	16	89	32	6	9	51	1.61
2978606--2978727	37	3.2	36	78	11	120	27	10	24	37	1.88
2979626--2979689	30	2.1	30	91	5	103	34	3	6	56	1.40
2979627--2979853	52	4.3	52	77	7	190	30	6	9	53	1.58
2979654--2979854	56	3.7	56	82	4	236	30	6	10	52	1.60
2979806--2979863	20	2.8	21	82	10	66	29	5	12	53	1.59
2979845--2979893	24	2.0	25	88	4	73	30	0	10	59	1.31
2979933--2980006	19	3.6	20	72	15	53	31	5	10	52	1.59
2980310--2980348	20	2.0	20	84	0	51	23	7	15	53	1.67
2980286--2980408	58	2.1	57	78	14	128	29	4	12	53	1.58
2980337--2980439	20	5.4	19	77	13	79	32	4	12	50	1.61
2983976--2984028	24	2.2	24	93	0	88	52	0	1	45	1.11
2984010--2984048	14	2.7	15	88	11	55	53	0	0	46	1.00
2988908--2988945	15	2.6	15	87	4	51	47	7	2	42	1.46
2990163--2990236	30	2.5	30	77	0	85	43	1	8	47	1.41
2990221--2990254	18	1.9	18	88	5	52	47	2	2	47	1.32
2991187--2991256	15	4.9	15	73	16	58	45	0	5	48	1.26
2991173--2991256	26	3.2	26	79	11	75	45	0	4	50	1.23
2991339--2991396	26	2.2	27	81	6	73	34	8	0	56	1.30
2991358--2991411	23	2.2	26	83	9	69	42	12	0	44	1.43
2991947--2991992	22	2.2	21	85	11	60	50	2	2	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2992134--2992182	23	2.1	23	84	0	62	44	0	0	55	0.99
2992143--2992185	19	2.3	18	84	15	52	44	0	0	55	0.99
2992273--2992305	2	16.5	2	100	0	66	48	0	0	51	1.00
3005212--3005287	32	2.7	27	78	20	91	40	10	7	40	1.69
3005835--3005873	20	2.0	20	94	0	69	43	2	7	46	1.46
3005955--3005984	2	15.0	2	100	0	60	50	0	0	50	1.00
3008633--3008674	14	3.2	14	83	12	54	23	16	4	54	1.61
3009984--3010020	19	1.9	19	88	0	56	62	8	5	24	1.44
3009987--3010073	29	3.0	29	84	1	104	54	12	10	22	1.68
3019735--3020062	165	2.0	165	98	0	629	35	20	17	25	1.95
3021037--3021202	74	2.3	72	86	2	215	50	4	6	38	1.48
3025209--3025245	18	2.1	18	100	0	74	21	13	10	54	1.69
3025781--3025877	48	2.0	48	89	0	149	36	20	16	26	1.94
3033099--3033410	155	2.0	155	90	2	493	23	10	13	52	1.71
3044971--3045364	131	3.0	131	80	2	450	24	16	20	39	1.92
3046999--3047027	2	14.5	2	100	0	58	48	0	0	51	1.00
3062586--3062765	90	2.0	90	92	0	297	28	13	17	40	1.87
3063767--3063801	12	2.9	12	95	0	61	20	0	22	57	1.41
3064963--3065012	21	2.3	23	82	6	59	38	4	0	58	1.17
3066320--3066356	13	2.9	13	92	4	58	0	8	0	91	0.41
3075479--3075525	25	1.9	25	91	4	69	27	0	46	25	1.53
3078338--3078379	18	2.3	19	84	12	52	50	2	9	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3078503--3078667	15	10.7	15	69	23	62	53	0	1	43	1.15
3078491--3078680	32	6.0	31	69	23	87	54	0	2	43	1.16
3078495--3078598	36	2.9	37	78	15	112	50	0	1	48	1.12
3078624--3078661	13	2.9	13	92	7	60	55	0	0	44	0.99
3078586--3078680	13	8.9	10	72	20	52	60	1	2	36	1.16
3102115--3102150	2	18.5	2	88	5	56	50	50	0	0	1.00
3103547--3103576	15	2.0	15	100	0	60	20	6	26	46	1.75
3106184--3106269	16	5.7	15	69	17	54	58	0	0	41	0.98
3126945--3126972	13	2.2	13	100	0	56	50	7	14	28	1.69
3127348--3127409	22	2.7	22	80	7	70	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74