genome.fa.s212.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  33  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7184110--7184152	20	2.1	19	83	12	50	51	0	18	30	1.47
7186924--7186980	26	2.1	27	87	3	80	19	31	26	22	1.98
7187081--7187137	3	19.3	3	96	3	107	31	0	0	68	0.90
7198469--7198574	45	2.3	46	83	4	126	44	18	19	16	1.87
7199226--7199890	119	5.6	119	78	5	533	20	20	14	44	1.86
7199240--7199915	356	1.9	355	80	3	795	20	21	14	44	1.86
7200074--7200172	26	3.8	26	78	5	94	21	26	23	29	1.99
7200205--7200347	3	48.3	3	78	10	118	27	5	2	64	1.27
7200341--7200395	27	2.0	27	85	0	74	1	14	3	80	0.94
7206675--7206966	148	2.0	148	91	3	484	27	15	14	42	1.85
7213292--7213383	45	2.0	45	97	0	175	27	8	14	50	1.72
7220914--7220942	2	14.5	2	100	0	58	48	0	0	51	1.00
7230178--7230218	20	2.0	20	95	0	73	43	4	12	39	1.63
7241260--7241329	33	2.2	32	82	7	79	47	11	5	35	1.64
7246297--7246354	30	1.9	31	82	10	75	51	3	0	44	1.18
7248808--7248858	23	2.2	23	86	13	70	49	0	0	50	1.00
7255513--7255565	27	2.0	26	85	3	70	58	1	0	39	1.09
7256042--7256138	48	2.0	48	100	0	194	35	10	16	38	1.83
7258020--7258052	16	2.0	17	88	5	50	54	0	0	45	0.99
7260133--7260174	21	2.2	20	87	12	61	73	4	2	19	1.12
7265277--7265309	8	4.2	8	92	3	50	54	18	0	27	1.44
7265638--7265674	18	2.0	19	89	5	58	43	8	24	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7267618--7268822	442	2.7	443	87	2	1633	42	8	9	39	1.68
7269708--7269745	20	1.9	20	84	10	51	21	2	2	73	1.07
7270899--7270931	11	3.1	11	91	4	50	57	15	0	27	1.38
7271447--7271503	5	11.6	5	75	17	57	15	1	3	78	0.96
7271448--7271503	14	3.9	14	84	13	69	16	1	3	78	0.97
7271445--7271503	9	6.1	9	75	13	55	15	1	3	79	0.94
7272420--7272616	97	2.0	98	96	1	360	20	14	7	57	1.61
7275440--7275495	9	6.3	9	79	4	69	75	0	14	10	1.06
7275441--7275495	17	3.2	17	81	2	65	74	0	14	10	1.07
7275440--7275495	18	3.2	17	87	5	76	75	0	14	10	1.06
7276776--7276900	66	1.9	66	85	6	173	20	24	12	44	1.85
7277108--7277330	86	2.6	86	84	0	293	34	19	13	33	1.90
7280558--7280603	23	2.0	23	95	0	83	45	19	8	26	1.79
7293447--7293476	1	30.0	1	93	0	51	3	0	96	0	0.21
7302222--7302327	54	1.9	55	84	5	144	60	9	2	27	1.42
7302347--7302377	15	2.0	16	93	6	55	77	9	0	12	0.99
7304140--7304353	106	2.0	106	95	0	383	30	12	23	33	1.91
7305365--7307004	548	3.0	547	88	2	2470	26	17	28	27	1.98
7308434--7308463	15	2.0	15	93	0	51	76	0	3	20	0.92
7310254--7310284	9	3.6	9	91	8	55	70	0	0	29	0.87
7312941--7312988	13	3.6	13	75	25	55	62	0	8	29	1.24
7312942--7313004	27	2.3	27	94	0	108	61	0	7	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7313986--7314577	235	2.5	231	76	9	549	33	10	4	51	1.56
7314391--7314787	211	1.9	210	82	5	505	36	11	4	47	1.58
7324783--7324842	30	2.0	30	100	0	120	36	10	20	33	1.86
7325934--7326023	3	30.0	3	80	8	85	35	3	37	23	1.71
7325947--7326004	21	2.8	21	97	0	98	36	0	41	22	1.54
7327310--7327446	66	2.1	66	95	2	249	40	10	2	46	1.51
7337793--7337857	3	21.7	3	100	0	130	66	0	0	33	0.92
7341108--7341259	80	1.9	80	94	0	268	28	9	21	40	1.84
7345241--7345454	106	2.0	106	87	0	302	34	14	23	27	1.94
7347642--7347702	20	3.0	21	81	9	65	47	6	6	39	1.55
7347796--7347836	14	2.9	15	82	7	50	75	7	9	7	1.18
7349042--7349125	6	14.7	6	80	12	81	65	5	0	28	1.16
7349629--7349680	17	2.9	18	77	5	61	42	9	11	36	1.74
7349820--7349890	16	4.2	18	77	15	71	39	12	15	32	1.85
7349924--7350153	104	2.2	102	81	8	252	36	12	13	37	1.82
7349924--7350054	35	3.8	35	68	15	103	36	13	12	36	1.84
7350378--7350515	24	5.9	23	70	13	77	43	16	2	36	1.63
7350430--7350637	92	2.3	90	80	4	220	37	16	8	36	1.80
7350426--7350637	22	9.2	23	67	9	83	39	16	8	35	1.79
7355132--7355174	16	2.8	16	89	6	63	69	9	6	13	1.35
7360898--7360940	20	2.1	21	87	12	63	60	2	4	32	1.30
7363245--7363303	12	5.5	11	73	17	52	15	0	13	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7363663--7363692	8	3.8	8	95	0	51	6	0	3	90	0.56
7363679--7363881	95	2.2	94	90	1	318	33	14	13	38	1.85
7363866--7363894	9	3.3	9	95	4	51	0	0	6	93	0.36
7363912--7364118	42	4.9	42	79	7	204	39	19	14	25	1.91
7364640--7364716	37	2.1	38	85	4	104	36	12	11	38	1.80
7365913--7365970	8	6.6	8	75	24	55	12	15	0	72	1.12
7365913--7365969	22	2.5	22	75	11	62	12	15	0	71	1.13
7370398--7370682	118	2.4	118	82	10	352	38	13	5	42	1.69
7370398--7370684	58	4.9	59	82	7	345	37	13	5	42	1.69
7370660--7370702	14	3.1	13	80	12	50	44	2	0	53	1.13
7372183--7372229	21	2.2	21	88	0	67	21	2	40	36	1.65
7374981--7375036	22	2.5	23	76	5	69	25	5	1	67	1.21
7385961--7386019	18	3.4	18	71	17	61	28	10	5	55	1.54
7385959--7386023	34	1.9	34	93	0	112	30	10	4	53	1.56
7386717--7386741	2	12.5	2	100	0	50	52	0	0	48	1.00
7387747--7387788	21	2.0	21	95	0	75	28	38	16	16	1.91
7393459--7393506	17	2.9	17	84	9	64	72	6	2	18	1.15
7393658--7393706	2	25.0	2	79	4	55	46	4	2	46	1.33
7394765--7394816	20	2.6	19	77	14	52	38	5	7	48	1.56
7395336--7395393	18	2.9	19	80	17	64	1	27	0	70	0.97
7395951--7395995	23	2.0	23	90	0	72	44	6	11	37	1.66
7397055--7397238	57	3.2	57	78	1	163	43	17	13	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7397258--7397377	42	2.8	40	76	9	114	43	19	10	26	1.84
7399371--7399415	8	5.6	8	82	7	56	11	2	2	84	0.80
7405006--7405102	49	2.0	49	84	8	126	48	8	12	30	1.70
7405978--7406033	17	3.8	14	78	17	51	80	5	1	12	0.96
7405990--7406031	21	1.9	21	85	9	57	78	4	2	14	1.01
7406480--7406671	66	2.9	66	78	7	171	47	13	19	19	1.81
7418057--7418094	17	2.3	16	83	16	51	81	0	2	15	0.80
7418782--7418836	6	8.2	6	78	21	56	78	1	1	18	0.94
7418785--7418831	14	3.1	15	85	14	62	76	2	2	19	0.99
7420491--7420515	11	2.3	11	100	0	50	24	0	0	76	0.80
7420880--7421046	82	2.0	82	94	0	289	37	9	1	50	1.45
7422207--7422236	9	3.3	9	90	0	51	36	0	10	53	1.35
7422768--7422839	35	2.0	36	89	5	110	33	8	4	54	1.50
7432149--7432192	15	2.9	15	93	6	72	29	13	18	38	1.89
7441720--7441766	23	2.0	23	95	0	85	21	8	19	51	1.73
7447513--7447565	17	3.3	17	70	21	51	50	9	11	28	1.69
7447681--7448420	32	22.5	32	69	11	166	30	14	17	36	1.90
7447658--7447841	65	2.8	65	79	6	201	28	14	17	39	1.88
7447757--7448113	34	10.8	33	72	9	167	28	14	19	37	1.90
7447855--7448032	65	2.7	66	79	4	198	29	14	17	38	1.89
7447691--7448098	165	2.5	165	88	2	597	28	14	18	37	1.90
7447887--7448113	100	2.3	99	81	6	257	29	13	18	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7448070--7448146	34	2.3	33	82	6	93	33	12	19	33	1.90
7447691--7448196	165	3.1	165	84	4	499	29	14	18	37	1.90
7449414--7449457	22	2.0	21	86	4	61	11	13	0	75	1.06
7454662--7454691	10	3.0	10	90	0	51	53	10	16	20	1.71
7454839--7455148	154	2.0	155	91	3	500	39	17	12	30	1.87
7454839--7455148	155	2.0	154	91	1	397	39	17	12	30	1.87
7456471--7456500	14	2.2	13	94	5	51	26	0	0	73	0.84
7456471--7456513	20	2.1	21	86	4	61	32	0	0	67	0.91
7456924--7457037	59	1.9	59	87	0	165	54	13	17	14	1.71
7458448--7458504	25	2.2	25	84	9	71	17	3	7	71	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74