genome.fa.s212.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  55  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10998689--10998973	58	4.8	58	86	3	365	37	13	6	42	1.70
10998997--10999034	12	3.2	12	85	14	60	84	0	0	15	0.63
10998998--10999031	6	5.7	6	86	13	52	85	0	0	14	0.60
10998995--10999031	19	1.9	19	89	10	58	83	0	0	16	0.64
10998995--10999092	22	4.4	23	70	13	80	68	4	1	26	1.14
10999381--10999421	20	2.0	20	86	9	57	2	34	0	63	1.08
10999495--10999532	19	2.0	19	94	0	67	47	13	10	28	1.76
10999878--10999960	34	2.3	38	82	10	104	61	2	7	28	1.35
10999932--11000009	22	3.4	22	82	7	84	62	1	6	29	1.28
10999993--11000024	16	2.0	16	93	0	55	84	0	3	12	0.74
11001188--11001260	30	2.4	31	84	6	96	60	12	9	17	1.58
11007031--11007106	29	2.6	30	80	2	91	36	3	2	56	1.32
11007033--11007106	30	2.5	29	80	2	85	37	4	2	55	1.33
11007129--11007262	30	4.5	30	82	5	130	51	1	5	41	1.35
11008022--11008069	15	3.1	15	79	11	53	35	6	2	56	1.36
11008241--11008285	16	2.6	18	89	10	67	26	4	2	66	1.22
11009207--11009276	20	3.5	20	74	16	65	34	1	2	61	1.20
11009631--11009663	16	2.1	16	88	11	50	12	0	6	81	0.85
11012532--11012647	22	5.3	22	69	17	62	34	19	18	27	1.95
11012591--11012647	22	2.6	22	76	15	64	31	21	19	28	1.97
11012675--11012800	22	5.7	22	71	3	83	31	17	19	30	1.95
11012713--11012800	44	2.0	44	88	0	131	31	19	18	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11019064--11019152	46	1.9	46	95	0	160	32	14	8	43	1.77
11019380--11019841	211	2.2	214	80	6	501	31	9	6	52	1.59
11021132--11021170	14	2.8	14	92	0	60	10	0	35	53	1.35
11021181--11021209	2	14.5	2	100	0	58	51	0	0	48	1.00
11021651--11021703	2	26.5	2	100	0	106	0	49	0	50	1.00
11025867--11026023	52	3.0	52	85	3	201	27	24	8	39	1.84
11029195--11029228	17	1.9	17	88	5	50	14	17	5	61	1.52
11030834--11030865	16	2.0	16	93	0	55	46	18	12	21	1.82
11033240--11033322	25	3.2	25	67	21	71	31	16	18	33	1.93
11040870--11040912	20	2.2	19	87	4	59	0	30	0	69	0.88
11048842--11049017	88	2.0	88	94	0	307	33	19	21	26	1.97
11051903--11052119	108	2.0	108	99	0	425	55	10	15	18	1.67
11053116--11053387	58	4.6	58	88	2	348	36	12	6	44	1.68
11053419--11053453	11	3.2	11	91	0	61	85	0	0	14	0.59
11053419--11053450	6	5.7	6	85	14	50	87	0	0	12	0.54
11053478--11053529	24	2.2	23	83	10	61	73	0	0	26	0.84
11053800--11053837	18	2.0	20	90	10	62	0	39	0	60	0.97
11054327--11054406	22	3.5	22	84	6	97	62	0	6	31	1.20
11054393--11054440	18	2.6	20	84	15	68	75	2	0	22	0.91
11054369--11054442	24	3.0	25	80	9	73	71	1	1	25	1.02
11055583--11055654	30	2.4	30	88	4	101	59	11	9	19	1.58
11061533--11061665	30	4.5	30	81	7	121	51	1	6	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11061539--11061665	59	2.2	58	80	8	141	51	1	4	41	1.32
11062433--11062480	15	3.1	15	79	11	53	35	6	4	54	1.45
11062652--11062698	18	2.6	17	83	12	58	27	4	4	63	1.31
11062696--11062757	21	3.0	20	75	15	63	41	6	1	50	1.38
11063827--11063864	17	2.2	17	90	0	58	26	0	10	63	1.27
11063911--11064319	216	1.9	219	81	9	496	30	11	5	52	1.61
11064319--11064346	14	2.0	14	100	0	56	57	0	0	42	0.99
11064550--11064599	17	2.8	18	85	8	59	30	0	2	68	1.01
11066884--11067005	22	5.6	21	72	5	73	34	18	17	30	1.93
11066934--11067072	66	2.1	67	78	6	149	31	15	20	32	1.94
11068949--11068979	12	2.6	12	89	0	53	0	0	9	90	0.46
11071431--11071569	61	2.3	61	89	2	208	35	11	22	30	1.90
11071467--11071565	29	3.3	29	65	8	81	33	13	21	32	1.91
11073652--11074104	211	2.1	214	80	5	508	31	9	6	52	1.59
11075377--11075431	22	2.4	22	84	6	74	20	3	29	47	1.67
11075381--11075417	18	2.1	18	89	0	56	13	2	35	48	1.57
11089656--11089683	2	14.0	2	100	0	56	50	0	0	50	1.00
11091744--11091789	3	15.3	3	82	8	58	65	2	2	30	1.16
11091996--11092153	29	5.5	28	72	15	108	46	33	0	19	1.55
11091996--11092156	57	2.8	57	86	5	227	45	33	0	20	1.56
11092056--11092256	87	2.3	86	84	6	246	46	34	0	17	1.55
11092009--11092256	30	8.6	29	73	14	163	46	33	0	19	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11094948--11094981	17	1.9	17	88	5	50	14	20	5	58	1.57
11098608--11098764	52	3.0	52	87	1	217	40	8	24	25	1.84
11099254--11099365	25	4.5	25	76	8	95	37	10	32	19	1.86
11099254--11099365	49	2.3	50	78	10	122	37	10	32	19	1.86
11099285--11099379	25	3.8	25	79	6	86	37	8	33	20	1.82
11099617--11099648	11	2.9	11	100	0	64	18	0	28	53	1.45
11099673--11099829	52	3.0	52	86	1	208	40	8	24	26	1.84
11102225--11102267	2	21.5	2	95	0	77	53	0	0	46	1.00
11102495--11102532	7	5.3	7	93	6	67	81	0	2	15	0.80
11111469--11111635	34	4.9	34	75	3	131	33	13	16	36	1.88
11114651--11114724	8	8.9	8	75	18	53	13	4	5	77	1.10
11114808--11114868	28	2.2	27	80	8	68	34	26	19	19	1.96
11114816--11114888	28	2.6	28	84	0	92	34	19	21	24	1.96
11115097--11116002	49	18.4	50	80	5	909	37	21	11	29	1.89
11129414--11129449	14	2.4	16	90	9	58	13	0	5	80	0.88
11129331--11129438	54	2.0	53	94	3	189	15	20	9	54	1.68
11129566--11129629	28	2.3	28	81	5	76	42	15	17	25	1.88
11134385--11134424	13	3.1	13	89	7	55	27	0	0	72	0.85
11134391--11134427	13	2.7	14	87	8	58	29	0	0	70	0.88
11149405--11149477	9	7.9	9	71	15	51	16	4	2	76	1.05
11149411--11149455	20	2.3	19	80	3	54	17	4	2	75	1.07
11149406--11149475	19	3.7	19	73	5	61	14	4	2	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11149848--11149898	22	2.3	22	86	0	75	21	9	33	35	1.86
11150146--11150274	40	3.2	39	78	5	141	36	13	13	36	1.84
11150146--11150291	40	3.6	39	76	13	136	37	13	12	36	1.83
11150281--11150502	41	5.4	42	70	11	120	42	11	13	32	1.79
11150133--11150514	81	4.7	81	76	6	344	40	11	13	34	1.80
11152465--11152495	13	2.4	13	94	0	53	0	19	3	77	0.90
11152530--11152639	41	2.7	40	81	9	107	4	19	2	73	1.13
11152447--11152616	16	10.8	16	67	20	65	5	19	1	73	1.11
11152571--11152607	17	2.1	18	95	5	67	5	13	0	81	0.86
11152457--11152639	41	4.6	37	72	18	104	4	19	2	73	1.12
11153784--11153826	16	2.6	18	82	14	56	0	37	0	62	0.95
11153806--11153830	12	2.1	12	100	0	50	0	40	0	60	0.97
11153781--11153833	27	2.0	27	85	7	72	0	33	0	66	0.92
11160230--11160274	22	2.2	20	84	15	56	26	8	4	60	1.46
11174547--11174653	53	2.0	53	82	7	128	38	8	14	39	1.76
11178928--11178961	16	2.2	16	89	5	52	17	8	0	73	1.08
11179084--11179118	11	3.2	11	100	0	70	0	0	8	91	0.42
11179178--11179309	42	3.2	42	81	3	151	43	18	9	28	1.82
11179688--11179798	21	4.9	21	71	13	78	36	14	9	39	1.79
11179686--11180060	25	15.8	25	68	17	140	36	14	10	38	1.80
11179681--11180035	46	7.5	46	80	10	351	37	14	9	38	1.79
11179746--11179853	55	2.0	55	81	7	130	37	14	9	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11179813--11180083	71	3.9	71	72	15	231	36	14	11	38	1.81
11181402--11181467	8	8.0	8	94	3	105	12	4	0	83	0.79
11181403--11181480	25	3.3	23	81	10	86	8	7	0	83	0.82
11181451--11181483	11	3.0	11	91	8	50	3	18	0	78	0.87
11185820--11185874	25	2.2	25	83	9	67	40	5	5	49	1.49
11186211--11186258	21	2.2	21	85	10	62	4	37	0	58	1.18
11186487--11186536	25	2.0	25	96	0	91	42	20	0	38	1.52
11186734--11186767	16	2.1	16	88	0	50	14	2	0	82	0.79
11189554--11189593	19	2.1	19	86	9	55	0	15	2	82	0.77
11190397--11190488	19	4.9	19	75	18	79	14	5	0	80	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74