genome.fa.s212.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  7  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852497--1852533	19	1.9	19	88	0	56	86	2	2	8	0.76
1855077--1855105	10	2.9	10	100	0	58	72	0	10	17	1.11
1864895--1864940	21	2.2	20	84	7	56	67	0	0	32	0.91
1864890--1864975	29	3.1	29	76	5	79	67	0	0	32	0.91
1865031--1865065	17	2.0	18	88	5	54	48	2	0	48	1.16
1875634--1875697	31	2.1	31	90	0	101	18	17	3	60	1.48
1883864--1883898	15	2.3	15	90	0	52	54	5	0	40	1.24
1889763--1889795	17	1.9	17	93	0	57	36	12	3	48	1.56
1889926--1889950	13	1.9	13	100	0	50	60	0	0	40	0.97
1890031--1890090	24	2.5	24	75	0	66	78	3	15	3	1.01
1890342--1890400	16	3.8	16	75	18	61	76	1	15	6	1.07
1891674--1891755	8	9.9	8	75	12	60	53	0	0	46	1.00
1891671--1891938	23	11.4	23	69	19	153	54	1	0	43	1.10
1891682--1891915	15	15.5	15	73	16	171	55	0	0	43	1.05
1891674--1891898	31	6.8	32	73	14	142	55	0	0	44	1.06
1891658--1891921	44	6.0	44	74	16	144	54	0	0	45	1.05
1891683--1891894	8	27.6	8	68	17	71	54	0	0	44	1.06
1891799--1891917	33	3.2	38	69	14	54	55	1	0	42	1.09
1892029--1892083	9	6.2	9	78	18	62	47	0	0	52	1.00
1891987--1892070	44	1.9	44	81	13	102	44	0	0	55	0.99
1892026--1892089	25	2.5	25	82	9	85	43	0	1	54	1.09
1894263--1894295	16	2.1	16	94	0	57	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894866--1894913	13	3.8	13	78	10	55	56	0	2	41	1.11
1894864--1894926	24	2.6	24	84	0	81	57	0	1	41	1.08
1894919--1894971	22	2.4	22	82	17	65	49	0	1	49	1.12
1895005--1895071	32	2.1	32	82	0	80	52	1	1	44	1.19
1912316--1912353	17	2.2	18	85	4	51	52	0	13	34	1.40
1915440--1915493	24	2.2	26	83	12	69	46	1	3	48	1.30
1916799--1916853	14	4.0	13	75	13	56	30	0	1	67	1.01
1919880--1919936	30	1.9	30	85	0	78	31	15	22	29	1.95
1920599--1920634	17	2.1	17	100	0	72	27	5	38	27	1.79
1933863--1933922	22	2.7	23	89	7	88	51	0	0	48	1.00
1934724--1934780	24	2.4	24	93	0	96	56	0	3	40	1.17
1948101--1948127	6	4.5	6	100	0	54	85	0	0	14	0.61
1953786--1953824	20	1.9	21	89	5	62	48	2	0	48	1.15
1959947--1960036	44	2.0	44	93	0	153	31	15	16	36	1.90
1963153--1963181	8	3.8	8	95	4	51	89	0	0	10	0.48
1965585--1965619	2	17.5	2	100	0	70	0	48	0	51	1.00
2004938--2004987	25	2.0	25	100	0	100	20	4	36	40	1.71
2007886--2007920	2	17.5	2	100	0	70	51	0	0	48	1.00
2010049--2010076	2	14.0	2	100	0	56	50	0	0	50	1.00
2012409--2012433	3	8.3	3	100	0	50	0	32	0	68	0.90
2012803--2012857	23	2.4	23	82	14	69	45	1	0	52	1.11
2012838--2012899	32	2.0	31	84	9	81	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2013866--2013912	25	1.9	24	86	4	67	80	6	2	10	0.96
2024772--2024823	25	2.1	25	82	7	61	42	1	1	53	1.23
2027626--2027651	12	2.2	12	100	0	52	57	0	0	42	0.98
2027665--2027726	30	2.2	28	81	15	83	45	3	0	51	1.17
2032853--2032900	15	3.3	15	80	11	55	66	0	2	31	1.03
2037100--2037415	117	2.7	117	88	0	470	24	32	23	19	1.98
2037343--2037488	73	2.0	73	86	2	204	21	31	26	20	1.98
2043245--2043306	30	2.0	31	81	9	74	38	1	4	54	1.31
2043542--2043875	171	2.0	170	94	1	589	45	5	5	42	1.52
2052647--2052673	13	2.1	13	100	0	54	29	7	0	62	1.22
2052874--2052898	4	6.2	4	100	0	50	24	0	0	76	0.80
2055607--2055662	24	2.3	24	81	6	60	30	3	14	51	1.59
2057308--2058021	180	4.0	180	90	2	1060	28	19	20	31	1.97
2060337--2060368	15	2.2	15	94	5	57	31	0	0	68	0.90
2060588--2060612	2	12.5	2	100	0	50	48	0	0	52	1.00
2081277--2081356	41	1.9	42	89	2	126	40	0	5	55	1.22
2089023--2089094	30	2.4	30	76	4	74	41	12	0	45	1.42
2092644--2092669	2	13.0	2	100	0	52	50	0	0	50	1.00
2095148--2095354	58	3.6	58	81	10	228	36	13	6	42	1.71
2095379--2095462	5	17.0	5	73	22	63	78	0	2	19	0.86
2095379--2095456	6	13.2	6	78	14	74	79	0	2	17	0.84
2095718--2095758	20	2.0	21	90	4	66	0	46	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2095952--2096001	22	2.3	22	79	6	57	50	18	0	32	1.47
2096208--2096355	33	4.5	30	69	23	54	70	1	4	23	1.11
2096229--2096290	30	2.2	29	83	11	83	69	1	4	24	1.17
2096230--2096353	24	5.2	24	71	18	73	70	1	4	23	1.12
2096267--2096373	6	17.7	6	70	18	53	73	0	3	21	1.04
2097150--2097231	43	1.9	42	85	7	112	35	15	10	37	1.83
2097400--2097457	22	2.7	21	86	5	71	34	18	8	37	1.82
2098626--2098689	34	2.0	33	81	9	78	10	21	0	67	1.21
2102638--2102845	58	3.6	58	90	2	312	37	12	6	42	1.69
2102637--2102727	27	3.2	27	67	17	67	39	13	4	42	1.64
2102753--2102843	27	3.2	27	65	22	69	38	14	6	40	1.72
2102719--2102809	28	3.2	28	66	22	71	38	10	6	43	1.66
2102869--2102945	14	5.6	13	70	22	52	75	2	0	22	0.93
2102869--2102953	10	7.7	11	71	20	54	75	2	0	22	0.92
2102870--2102953	9	9.3	9	78	20	63	75	2	0	22	0.92
2103720--2103865	9	16.4	9	69	22	62	71	1	2	23	1.06
2103685--2103847	4	40.8	4	65	20	65	71	1	3	23	1.12
2103683--2103805	45	2.9	43	78	16	125	71	1	4	22	1.12
2103746--2103866	6	20.5	6	69	13	54	71	1	2	23	1.07
2103686--2103857	23	7.7	22	69	17	88	70	1	3	23	1.12
2103768--2103864	29	3.2	30	76	13	85	71	1	2	25	1.04
2103768--2103860	37	2.6	37	85	8	122	70	1	2	25	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2109213--2109239	2	13.5	2	100	0	54	51	0	0	48	1.00
2110540--2110753	58	3.7	58	81	11	233	35	13	6	43	1.70
2110766--2110833	5	12.6	5	86	11	75	79	0	1	19	0.81
2110766--2110833	12	6.3	11	82	15	81	79	0	1	19	0.81
2110766--2110886	43	3.1	38	73	18	113	76	2	2	19	1.02
2110766--2110827	33	1.9	32	90	9	99	79	0	1	19	0.82
2110767--2110834	22	3.1	22	84	16	88	79	0	1	19	0.81
2111608--2111674	15	4.3	15	79	9	64	73	1	4	20	1.09
2111645--2111756	6	18.7	6	66	20	56	74	0	4	20	1.05
2111632--2111677	17	2.6	18	79	10	58	71	0	2	26	0.97
2111613--2111669	30	1.9	29	89	3	87	73	1	3	21	1.07
2111648--2111751	19	5.0	21	70	21	60	73	0	4	21	1.08
2111595--2111688	16	5.6	16	68	18	57	69	1	5	24	1.16
2111587--2111739	68	2.2	68	81	13	181	72	1	3	22	1.08
2111621--2111739	35	3.3	35	78	14	118	73	0	3	21	1.02
2112122--2112173	26	2.0	25	88	7	77	38	17	11	32	1.85
2112147--2112250	41	2.5	40	84	7	129	35	19	16	28	1.93
2112548--2112629	43	1.9	42	85	7	112	35	15	10	37	1.83
2112798--2112855	22	2.6	22	86	0	71	36	18	6	37	1.78
2118122--2118260	61	2.4	58	85	8	183	37	15	6	41	1.73
2118286--2118311	9	2.9	9	100	0	52	80	0	0	19	0.71
2118581--2118625	15	2.9	16	75	25	51	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2119103--2119246	4	36.2	4	67	16	68	71	1	4	22	1.11
2119103--2119230	41	3.1	41	75	13	129	73	1	4	20	1.09
2119148--2119272	31	4.2	31	75	15	93	72	1	3	23	1.08
2119251--2119281	3	10.7	3	93	6	55	70	0	0	29	0.87
2119138--2119283	8	17.5	8	68	24	56	71	1	3	23	1.08
2119124--2119282	38	4.1	38	76	18	123	71	1	3	22	1.12
2119251--2119283	17	1.9	17	100	0	66	72	0	0	27	0.85
2127208--2127246	11	3.5	11	85	0	51	46	2	0	51	1.14
2136290--2136349	22	2.6	22	78	5	66	43	0	1	55	1.10
2136289--2136359	24	3.0	23	75	19	58	45	0	1	53	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74