genome.fa.s212.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  51  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10338547--10338598	18	2.8	18	77	16	61	9	11	0	78	0.95
10338536--10338598	18	3.3	19	74	17	60	7	12	0	79	0.93
10341774--10341934	38	4.3	38	77	5	139	36	8	18	36	1.82
10341774--10341953	76	2.4	74	84	4	209	36	8	19	35	1.83
10341808--10341953	38	3.8	38	78	0	139	34	8	20	36	1.84
10341823--10341970	76	2.0	74	81	6	174	33	10	21	34	1.87
10344137--10344309	7	26.4	7	70	16	54	20	1	31	46	1.60
10344156--10344368	13	16.2	13	72	13	125	19	1	31	47	1.58
10344189--10344368	65	2.8	65	86	7	258	18	1	32	46	1.59
10344982--10345014	10	3.4	10	91	4	50	3	24	0	72	0.98
10346109--10346143	16	2.2	16	90	5	54	20	0	2	77	0.90
10346398--10346448	21	2.5	20	75	15	50	50	1	3	43	1.31
10347068--10347129	18	3.6	17	74	22	58	35	1	0	62	1.05
10350690--10350715	9	2.9	9	100	0	52	0	7	0	92	0.39
10350689--10350717	9	3.0	10	90	10	51	0	10	0	89	0.48
10353964--10354003	20	2.0	20	100	0	80	10	30	25	35	1.88
10364246--10364271	4	6.5	4	100	0	52	50	23	0	26	1.50
10364705--10364748	23	2.0	21	86	8	61	56	0	4	38	1.20
10365272--10365304	16	2.0	17	88	5	50	45	6	0	48	1.27
10365661--10365694	14	2.4	14	90	0	50	41	0	2	55	1.15
10366230--10366260	2	15.5	2	100	0	62	48	0	0	51	1.00
10372458--10372498	17	2.4	18	84	15	52	70	0	2	26	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10372458--10372521	16	4.0	16	75	13	60	68	0	1	29	0.99
10376318--10376357	19	2.0	19	85	9	53	82	0	5	12	0.82
10376613--10376660	20	2.4	20	79	6	53	52	6	0	41	1.27
10379698--10379758	31	2.0	31	86	0	86	44	11	13	31	1.79
10383090--10383149	29	2.1	29	81	12	70	43	1	1	53	1.20
10385681--10385725	2	23.5	2	86	8	67	46	0	2	51	1.13
10386094--10386148	23	2.6	21	81	13	67	69	0	0	30	0.89
10386069--10386150	30	2.7	30	81	14	89	64	0	0	35	0.94
10386662--10386704	22	2.0	21	90	4	68	55	0	0	44	0.99
10387015--10387061	14	3.3	14	86	13	69	80	0	19	0	0.70
10387016--10387059	5	8.8	5	85	9	63	79	0	20	0	0.73
10387015--10387074	16	4.1	14	83	14	68	80	0	16	3	0.85
10390774--10390806	17	1.9	17	88	11	50	69	0	15	15	1.19
10391916--10391956	20	2.0	20	90	0	64	14	9	7	68	1.39
10391948--10391981	18	1.9	17	88	5	50	26	0	0	73	0.83
10392976--10393001	2	13.0	2	100	0	52	50	0	0	50	1.00
10398832--10398928	9	10.4	9	70	18	65	76	1	19	3	0.98
10398850--10398919	31	2.3	31	79	13	83	78	0	17	4	0.90
10398855--10398895	21	2.0	21	95	0	73	78	0	17	4	0.93
10398850--10398960	26	4.2	25	78	15	93	75	0	18	6	1.00
10398867--10398938	36	2.0	36	86	10	103	76	0	19	4	0.95
10398926--10398958	14	2.2	16	89	10	52	75	0	12	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10398851--10398960	51	2.1	53	82	14	131	75	0	18	6	1.01
10398889--10398955	24	2.8	23	76	17	64	74	0	17	7	1.04
10399156--10399189	15	2.2	16	94	5	61	26	8	11	52	1.67
10400156--10400292	46	3.0	45	84	6	150	39	8	13	38	1.75
10400155--10400292	25	6.0	22	75	17	93	39	8	13	39	1.75
10400810--10401093	42	6.7	41	79	9	257	25	12	21	40	1.89
10400810--10401073	83	3.1	83	85	5	291	25	11	22	40	1.88
10400810--10401293	86	5.6	86	83	5	423	25	14	20	39	1.90
10400928--10401293	44	8.4	44	83	6	401	25	15	19	39	1.91
10400810--10401293	44	11.3	42	81	8	363	25	14	20	39	1.90
10400990--10401293	130	2.3	132	89	2	443	25	16	19	39	1.91
10401483--10401565	6	12.8	6	79	14	51	25	1	1	72	0.99
10401478--10401522	21	2.1	21	92	8	74	17	0	4	77	0.92
10401505--10401562	3	18.7	3	79	13	64	31	1	0	67	1.01
10402436--10402576	73	1.9	72	81	4	167	49	7	10	32	1.64
10402689--10402722	12	2.8	12	87	12	52	17	0	0	82	0.67
10402690--10402736	22	2.1	22	84	7	60	23	0	0	76	0.78
10407679--10407715	17	2.2	18	80	14	51	56	0	0	43	0.99
10407683--10407893	11	17.8	11	67	23	51	45	0	4	49	1.28
10407683--10407874	21	9.1	20	73	17	115	46	1	4	48	1.28
10407713--10407768	28	2.0	28	86	6	78	44	0	5	50	1.25
10407812--10407893	22	3.8	22	86	3	121	43	0	3	52	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10407794--10407887	43	2.2	42	83	9	118	43	1	5	50	1.32
10407697--10407893	42	4.6	43	72	14	158	44	1	4	49	1.29
10407811--10407923	11	10.5	11	74	7	106	42	0	4	52	1.27
10407814--10407920	54	2.0	54	81	3	126	42	0	4	51	1.29
10407815--10407922	21	5.0	21	79	9	85	42	0	4	51	1.28
10408050--10408131	11	7.8	11	73	17	50	34	3	6	56	1.42
10408048--10408101	22	2.5	22	84	6	65	31	1	9	57	1.41
10408074--10408138	29	2.2	29	81	5	78	40	3	3	53	1.32
10408151--10408201	18	2.6	20	78	15	61	49	0	3	47	1.20
10408194--10408279	23	4.0	21	73	10	84	36	1	1	61	1.11
10408148--10408267	11	11.7	10	68	22	54	42	0	1	55	1.16
10408312--10408346	11	3.2	11	83	0	52	40	0	0	60	0.97
10408311--10408374	11	6.3	10	71	16	51	46	1	0	51	1.10
10408411--10408676	129	2.1	127	81	5	304	45	10	4	39	1.59
10408480--10408707	127	1.8	127	83	8	304	46	10	4	38	1.61
10412076--10412352	108	2.5	110	83	6	335	37	12	9	40	1.76
10412070--10412363	111	2.6	109	77	15	289	37	11	9	41	1.74
10412604--10412647	21	2.1	21	91	0	70	31	31	9	27	1.88
10424760--10424872	11	11.1	11	69	19	50	34	4	5	55	1.42
10424808--10424890	29	2.9	29	94	0	139	39	4	2	53	1.35
10424855--10424891	18	2.1	18	89	0	56	48	2	2	45	1.30
10424956--10424998	11	3.9	11	78	0	50	37	0	4	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10425087--10425121	11	3.2	11	83	0	52	37	0	2	60	1.12
10425086--10425149	11	6.3	10	71	16	51	45	1	1	51	1.20
10425185--10425448	127	2.1	129	78	8	290	43	10	6	39	1.63
10425433--10425479	16	3.0	15	79	17	51	55	8	0	36	1.31
10425702--10425740	20	2.0	20	89	0	60	33	0	0	66	0.92
10425718--10425755	18	2.1	18	85	9	51	26	0	5	68	1.11
10425751--10425790	21	2.0	20	90	5	62	57	5	0	37	1.21
10425872--10425908	17	2.2	17	95	0	65	64	5	10	18	1.43
10435797--10435847	24	2.1	25	85	3	68	17	25	7	49	1.74
10437436--10437517	31	2.6	31	80	0	101	35	18	17	29	1.93
10437372--10437586	116	1.9	116	80	0	259	37	19	14	28	1.92
10437467--10437723	84	3.0	84	76	4	221	35	18	15	30	1.92
10437627--10437689	31	2.0	32	84	3	83	38	17	14	30	1.89
10437839--10437910	22	3.3	22	86	0	90	34	22	19	23	1.96
10437839--10437922	22	3.8	22	83	0	87	34	20	19	26	1.96
10438431--10438514	37	2.3	36	85	6	107	11	8	22	57	1.61
10439720--10439764	18	2.4	19	82	14	58	20	2	2	75	1.01
10440047--10440122	20	3.7	20	73	16	57	65	1	6	26	1.24
10440104--10440132	3	9.7	3	100	0	58	68	0	0	31	0.89
10440395--10440455	22	2.8	22	87	5	79	49	27	1	21	1.59
10441665--10441757	46	2.1	46	84	11	122	29	11	10	48	1.73
10442698--10442738	18	2.3	19	87	8	59	31	9	0	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10453539--10453583	20	2.2	20	88	7	65	28	0	2	68	1.01
10453602--10453656	21	2.4	24	80	17	64	54	1	0	43	1.10
10453669--10453711	20	2.2	20	88	8	63	60	9	4	25	1.47
10453695--10453752	26	2.2	26	75	6	64	53	6	1	37	1.38
10455976--10456026	15	3.5	14	78	21	52	56	1	7	33	1.39
10455989--10456046	18	3.1	19	85	7	66	58	1	5	34	1.30
10456587--10456658	23	3.1	22	75	14	74	52	0	0	47	1.00
10456598--10456664	23	2.9	23	95	4	118	50	0	0	49	1.00
10460562--10460603	22	1.9	22	90	9	68	47	14	9	28	1.75
10464402--10464451	25	2.0	26	88	7	77	54	8	18	20	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74