genome.fa.s212.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  31  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6790576--6790638	14	4.4	14	76	6	56	73	0	3	23	0.98
6790587--6790642	22	2.8	19	80	19	69	75	0	3	21	0.96
6790835--6790899	34	1.9	34	84	12	89	70	3	6	20	1.22
6791345--6791381	18	2.1	18	90	5	58	83	2	8	5	0.88
6791344--6791410	25	2.7	26	77	9	68	73	5	8	11	1.25
6791775--6791815	16	2.4	16	88	12	55	82	0	12	4	0.81
6791775--6791849	18	4.2	18	73	23	61	78	2	10	8	1.05
6791771--6791816	9	5.0	9	78	5	56	82	0	13	4	0.81
6791865--6791912	20	2.2	23	85	10	66	68	0	2	29	1.01
6791874--6791920	23	2.1	21	84	7	58	74	0	2	23	0.93
6792270--6792333	22	2.9	22	71	15	60	76	1	14	7	1.07
6792272--6792326	21	2.6	21	77	5	58	78	1	12	7	1.04
6792434--6792477	15	2.8	16	83	16	56	79	0	13	6	0.92
6792434--6792480	16	2.9	16	76	17	53	78	0	12	8	0.95
6792530--6792572	19	2.3	19	79	0	50	72	0	6	20	1.08
6793760--6793817	17	3.5	16	77	17	57	77	0	8	13	0.98
6793807--6793839	17	1.9	17	93	0	57	72	12	0	15	1.12
6794220--6794260	21	2.0	20	86	13	57	73	9	7	9	1.26
6794415--6794478	16	3.8	17	80	11	62	78	0	12	9	0.97
6794415--6794496	33	2.5	33	84	6	94	76	1	10	10	1.07
6794414--6794497	17	5.1	16	73	11	62	75	1	10	13	1.12
6794866--6794941	19	4.2	19	69	19	63	75	1	11	11	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6794862--6794926	34	1.9	33	84	9	87	75	0	12	12	1.05
6794341--6795254	446	2.0	449	91	3	1477	66	3	11	18	1.38
6795606--6795639	17	1.9	17	88	5	50	79	2	8	8	1.03
6798842--6799122	152	1.8	152	92	0	472	47	17	12	22	1.81
6802750--6802916	81	2.1	81	94	0	289	52	15	10	22	1.73
6806377--6806588	106	2.0	106	92	1	354	40	19	20	19	1.92
6810889--6811349	232	2.0	232	100	0	922	41	20	14	23	1.89
6824057--6824117	23	2.7	23	80	14	63	73	1	18	6	1.12
6824057--6824118	22	2.7	22	80	11	63	72	1	17	8	1.17
6824611--6824736	29	4.6	29	68	19	74	73	0	17	8	1.13
6825732--6825772	18	2.3	18	80	16	50	48	2	14	34	1.57
6826481--6826527	22	2.2	22	85	11	62	55	4	10	29	1.53
6826723--6826966	40	6.0	40	72	11	176	38	16	10	34	1.83
6827394--6827459	17	3.8	17	71	13	53	74	13	1	10	1.15
6827425--6827470	21	2.2	21	84	7	58	80	13	0	6	0.89
6833095--6833128	15	2.3	15	90	10	52	32	2	2	61	1.26
6836926--6837001	27	2.7	29	78	11	79	48	1	0	50	1.09
6836944--6837001	29	2.1	27	84	12	73	51	1	0	46	1.11
6837362--6837420	7	9.3	7	75	25	60	71	0	0	28	0.87
6837362--6837440	20	4.0	21	75	20	73	73	1	1	24	0.98
6837367--6837440	37	2.0	38	89	7	116	74	1	1	22	0.97
6837366--6837419	25	2.1	27	82	6	67	74	0	0	25	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6837366--6837462	19	5.1	19	75	6	72	75	2	2	20	1.01
6838391--6838425	13	2.7	13	90	0	52	25	34	25	14	1.94
6838608--6838650	5	8.6	5	82	10	52	79	4	0	16	0.90
6838611--6838680	15	4.5	15	74	10	59	71	4	0	24	1.04
6838631--6838680	11	4.7	10	79	13	55	68	2	0	30	1.01
6850012--6850044	8	4.2	8	92	7	59	87	0	0	12	0.53
6850013--6850044	15	2.1	15	100	0	64	87	0	0	12	0.54
6850835--6851397	49	11.5	48	82	4	522	28	13	20	37	1.91
6850835--6851378	197	2.8	196	84	3	684	29	13	20	36	1.91
6850835--6851397	148	3.8	145	79	6	553	28	13	20	37	1.91
6872029--6872053	13	1.9	13	100	0	50	28	0	0	72	0.86
6872018--6872067	21	2.4	21	77	12	57	28	0	2	70	0.99
6874322--6874355	15	2.3	15	89	0	50	2	29	2	64	1.22
6876400--6876437	20	1.9	20	94	0	67	63	2	0	34	1.09
6876393--6876440	20	2.6	18	80	9	53	60	2	2	35	1.20
6877037--6877091	24	2.3	23	75	9	56	45	5	1	47	1.36
6882546--6882580	15	2.3	15	100	0	70	31	0	17	51	1.45
6888535--6888590	26	2.2	25	78	6	60	14	5	14	66	1.42
6888890--6889442	41	13.6	40	71	13	203	35	12	15	37	1.85
6889148--6889422	40	6.8	40	75	8	137	35	12	13	37	1.83
6888890--6889442	81	6.8	81	73	11	285	35	12	15	37	1.85
6888909--6889440	122	4.4	123	75	7	453	36	12	14	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6889233--6889442	40	5.2	40	80	2	154	36	12	14	35	1.85
6889363--6889427	20	3.2	20	64	0	58	41	12	10	35	1.78
6889493--6889544	23	2.4	22	84	9	70	26	11	5	55	1.58
6889493--6889556	23	2.9	21	80	13	67	25	12	4	57	1.54
6890852--6890878	14	1.9	14	100	0	54	7	0	3	88	0.61
6891216--6891284	35	1.9	34	83	13	86	4	28	0	66	1.10
6891236--6891357	29	4.4	28	68	15	76	5	19	0	74	1.01
6891255--6891431	28	6.2	26	69	16	88	6	17	1	74	1.12
6891279--6891365	18	4.7	18	72	14	63	5	14	1	78	1.00
6891367--6891429	29	2.2	28	80	8	74	9	17	3	69	1.28
6891273--6891444	60	2.8	60	78	16	158	6	16	1	74	1.12
6891408--6891459	19	2.8	18	83	11	61	7	15	0	76	0.99
6891477--6891523	23	2.0	23	95	0	85	36	10	12	40	1.78
6900532--6900570	15	2.6	15	95	0	69	46	12	5	35	1.65
6900702--6900756	24	2.3	24	79	17	62	52	21	5	20	1.66
6902545--6902569	3	8.3	3	100	0	50	32	0	0	68	0.90
6907311--6907340	2	15.0	2	100	0	60	50	0	0	50	1.00
6908068--6908189	63	1.9	63	81	3	147	31	6	1	60	1.32
6909269--6909321	3	17.7	3	88	7	81	64	1	0	33	1.05
6918212--6918247	3	12.0	3	100	0	72	66	0	0	33	0.92
6918695--6918728	14	2.3	15	90	5	52	23	26	11	38	1.89
6919690--6919883	77	2.5	76	78	1	190	31	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6919793--6920277	241	2.0	244	84	3	636	35	17	14	32	1.90
6920777--6920880	33	3.2	32	79	5	100	31	19	12	36	1.89
6920804--6920896	33	2.8	33	81	3	107	31	20	13	34	1.92
6922565--6922592	5	5.6	5	100	0	56	17	0	17	64	1.30
6926364--6926408	22	2.0	22	91	0	72	64	0	15	20	1.29
6928998--6929221	83	2.7	83	77	3	236	27	12	19	40	1.87
6929001--6929219	82	2.6	83	78	3	235	27	12	19	41	1.87
6928949--6929263	84	3.8	84	75	6	273	27	13	18	39	1.89
6929772--6929938	91	1.8	92	83	6	223	37	6	12	43	1.69
6929980--6930022	18	2.4	18	80	7	52	69	18	0	11	1.17
6930423--6930480	19	3.1	19	80	9	57	36	18	5	39	1.74
6932125--6932153	3	9.7	3	100	0	58	31	0	0	68	0.89
6932836--6932869	17	1.9	18	88	5	52	55	0	8	35	1.31
6933139--6933184	20	2.2	21	92	3	76	34	15	15	34	1.89
6934690--6934742	21	2.6	21	84	3	63	45	13	20	20	1.84
6934910--6934978	21	3.3	21	75	18	63	37	24	18	18	1.94
6938437--6938489	17	2.9	19	77	11	74	77	0	9	13	0.99
6938445--6938493	27	1.9	24	84	12	62	75	0	10	14	1.04
6941253--6941301	23	2.1	23	88	0	71	32	8	14	44	1.74
6943478--6943510	17	1.9	17	93	0	57	81	0	18	0	0.68
6943886--6943911	2	13.0	2	100	0	52	50	0	0	50	1.00
6947547--6947589	21	2.1	20	87	12	61	48	0	18	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6951076--6951153	38	2.1	37	90	2	120	25	5	32	37	1.78
6951984--6952030	19	2.4	20	92	7	87	25	27	25	21	1.99
6957778--6957810	2	16.5	2	93	0	57	48	0	3	48	1.17
6960327--6960381	27	2.0	27	82	7	65	45	3	10	40	1.57
6966788--6967685	356	2.5	352	84	3	1093	36	14	11	37	1.83
6974472--6974514	2	22.5	2	82	17	56	48	0	2	48	1.14
6999127--6999189	2	33.0	2	82	9	69	42	1	55	0	1.09
7001934--7001970	3	12.3	3	94	0	65	67	2	0	29	1.04
7011057--7011105	24	2.0	24	100	0	98	51	8	20	20	1.73
7011788--7011819	2	16.0	2	100	0	64	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74