genome.fa.s212.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  54  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10772407--10772476	31	2.3	31	80	5	79	44	31	0	24	1.54
10772442--10772476	12	2.8	13	91	8	56	42	34	0	22	1.54
10772345--10772464	19	6.1	20	66	16	63	42	35	1	20	1.62
10775494--10775562	18	3.8	18	69	16	54	50	1	1	46	1.19
10775629--10775685	30	2.0	28	86	6	78	57	3	0	38	1.16
10775704--10775751	25	1.9	25	83	8	62	54	2	0	43	1.12
10776037--10776080	22	2.0	22	90	0	70	38	4	0	56	1.20
10776048--10776094	18	2.6	18	82	3	58	44	4	0	51	1.21
10778033--10778392	159	2.3	158	82	3	402	34	6	14	44	1.71
10778091--10778438	159	2.2	157	80	7	379	34	6	15	43	1.73
10778634--10778718	17	4.9	17	71	17	59	50	1	1	47	1.16
10778837--10778876	17	2.5	16	88	11	64	45	2	0	52	1.14
10778843--10778875	17	1.9	17	100	0	66	48	3	0	48	1.17
10779178--10779468	152	1.9	149	82	4	361	48	3	6	41	1.45
10783273--10783451	90	2.0	89	96	2	333	44	10	6	39	1.63
10792382--10792461	32	2.5	32	93	0	133	56	3	7	32	1.45
10792407--10792458	15	3.2	16	76	12	54	63	3	5	26	1.34
10792649--10792702	19	2.9	19	84	13	76	20	3	33	42	1.70
10794231--10794619	144	2.7	139	77	11	358	39	14	14	31	1.86
10794282--10794696	144	2.9	140	76	8	358	40	13	14	31	1.86
10795454--10795491	3	12.7	3	100	0	76	31	0	0	68	0.90
10799936--10799983	19	2.5	19	86	0	60	14	10	2	72	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10800895--10800963	28	2.4	27	80	9	66	40	4	7	47	1.51
10807167--10807213	24	2.0	24	87	4	69	48	6	2	42	1.40
10815115--10815172	15	3.8	16	72	20	52	50	1	0	48	1.11
10815123--10815187	31	2.1	32	85	2	87	47	1	0	50	1.10
10815147--10815191	15	3.1	15	78	18	51	46	0	0	53	1.00
10815251--10815316	29	2.2	30	78	2	71	40	10	3	45	1.54
10818586--10818612	3	9.0	3	100	0	54	66	0	0	33	0.92
10819768--10819829	3	19.3	3	76	15	54	0	29	6	64	1.18
10819767--10819835	21	3.1	21	86	11	102	0	31	5	62	1.19
10824871--10824907	16	2.4	16	90	4	58	75	5	0	18	0.99
10827813--10827864	15	3.5	14	76	10	50	61	0	28	9	1.27
10827820--10827864	10	4.6	10	84	10	58	62	0	26	11	1.29
10829523--10829564	21	2.0	21	100	0	84	23	19	23	33	1.97
10830357--10830626	136	2.0	136	92	1	452	34	10	23	32	1.88
10834725--10834761	19	1.9	19	88	0	56	18	0	27	54	1.44
10835286--10835324	14	2.7	15	80	8	53	20	0	0	79	0.73
10838152--10838189	20	1.9	20	88	0	58	81	5	13	0	0.85
10838150--10838188	11	3.5	11	85	0	51	84	5	10	0	0.76
10842244--10842269	13	2.0	13	100	0	52	46	0	15	38	1.46
10848710--10848758	22	2.2	23	89	10	75	71	22	0	6	1.08
10848835--10848883	25	2.0	25	87	0	71	22	18	14	44	1.85
10857563--10857611	22	2.2	23	89	10	75	71	22	0	6	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857689--10857737	25	2.0	25	87	0	71	22	18	14	44	1.85
10859269--10859297	3	9.7	3	100	0	58	68	0	0	31	0.89
10866543--10866578	16	2.2	16	90	9	56	58	19	2	19	1.52
10870903--10870945	9	4.5	10	80	8	54	65	0	0	34	0.93
10870903--10870945	19	2.3	19	88	8	61	65	0	0	34	0.93
10871117--10871147	15	2.1	15	93	0	53	80	9	0	9	0.90
10871100--10871147	21	2.2	22	88	7	71	77	8	2	12	1.08
10871321--10871352	11	3.1	11	82	17	50	59	0	0	40	0.97
10872078--10872133	27	2.1	26	86	3	76	26	0	8	64	1.23
10872731--10872796	34	1.9	34	84	0	87	51	4	3	40	1.38
10877490--10877543	24	2.2	25	87	9	76	55	9	11	24	1.64
10877445--10877581	68	2.0	67	84	4	177	52	13	8	25	1.68
10877416--10877630	112	1.9	113	83	0	279	49	14	9	26	1.73
10877513--10877766	132	1.9	133	83	4	334	49	14	9	26	1.74
10877513--10877771	44	5.9	44	81	2	250	50	13	9	26	1.73
10877513--10877774	88	3.0	88	79	3	312	49	13	9	27	1.73
10878730--10878770	14	3.0	14	85	3	57	4	2	7	85	0.81
10878730--10878769	16	2.5	15	84	15	53	2	2	7	87	0.71
10883741--10883770	5	6.0	5	100	0	60	0	40	0	60	0.97
10883743--10883777	15	2.3	15	90	0	52	2	42	0	54	1.15
10896899--10896985	28	3.3	25	79	7	93	22	31	18	27	1.97
10897030--10897088	3	19.7	3	92	0	73	32	8	0	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10897081--10897125	20	2.2	20	84	0	54	11	4	2	82	0.91
10897504--10897553	21	2.4	20	83	9	64	18	6	14	62	1.51
10898070--10898096	14	1.9	14	100	0	54	66	7	0	25	1.17
10898837--10898880	23	1.9	23	86	9	63	11	2	36	50	1.51
10898910--10898961	20	2.6	20	87	0	68	23	0	30	46	1.53
10899397--10899466	5	13.8	5	75	15	56	17	2	4	75	1.08
10899402--10899455	21	2.6	21	91	8	85	18	1	3	75	1.03
10899413--10899482	29	2.3	30	85	4	88	20	1	4	74	1.07
10899431--10899483	22	2.3	23	76	20	58	20	1	3	73	1.08
10899555--10899617	31	2.0	31	84	6	83	76	1	15	6	1.07
10899828--10899916	37	2.4	37	98	0	169	34	15	19	30	1.93
10907092--10907133	21	2.0	20	86	9	57	28	2	2	66	1.16
10911752--10911943	103	1.9	103	82	2	242	37	10	11	40	1.77
10911895--10912113	100	2.1	102	82	3	253	33	11	9	44	1.74
10913250--10913308	19	3.1	19	70	0	55	45	23	16	13	1.83
10925287--10925684	58	6.8	58	84	4	494	43	6	12	38	1.66
10929619--10929716	19	5.1	19	74	8	83	79	0	14	6	0.91
10929642--10929716	30	2.5	30	76	8	89	81	0	13	5	0.86
10930400--10930527	63	2.0	63	90	0	202	35	8	24	32	1.86
10930797--10930850	24	2.2	24	87	9	74	31	16	12	38	1.87
10930982--10931076	42	2.3	42	81	10	108	25	12	20	42	1.87
10931105--10931305	42	4.6	44	80	8	216	22	15	17	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10931105--10931305	87	2.3	87	88	3	289	22	15	17	43	1.87
10931468--10931499	12	2.7	12	90	0	55	84	6	9	0	0.78
10933398--10933831	117	3.7	114	84	7	552	41	6	13	38	1.71
10933379--10933831	59	7.7	58	84	7	560	42	6	12	38	1.69
10933398--10933831	176	2.5	173	86	8	576	41	6	13	38	1.71
10935624--10935801	62	2.9	60	74	12	155	33	13	23	29	1.93
10937027--10937379	131	2.7	130	79	7	331	43	8	8	40	1.65
10938981--10939034	24	2.2	25	83	3	65	9	18	1	70	1.23
10943493--10943636	42	3.4	42	73	14	109	29	11	15	43	1.82
10943459--10943636	84	2.1	84	80	8	193	28	11	16	43	1.83
10944149--10944207	4	15.5	4	83	13	63	1	18	0	79	0.81
10944132--10944186	25	2.2	25	87	6	76	7	14	0	78	0.96
10945221--10945278	21	2.8	21	82	7	64	18	1	3	75	1.03
10945241--10945281	21	1.9	22	95	5	75	12	2	9	75	1.13
10945469--10945723	141	1.8	141	82	5	327	51	5	7	34	1.54
10955843--10955872	2	15.0	2	92	0	51	46	0	3	50	1.18
10957282--10957324	15	2.9	15	83	10	52	2	16	0	81	0.79
10962514--10962548	2	17.5	2	93	0	61	48	0	0	51	1.00
10965069--10965127	10	6.1	10	75	11	52	54	0	5	40	1.23
10965071--10965128	19	3.0	20	82	5	66	51	0	5	43	1.24
10965070--10965126	29	2.0	29	82	6	71	52	0	5	42	1.24
10965161--10965219	30	1.9	30	83	10	75	32	0	6	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10965230--10965316	44	2.0	44	90	4	140	40	11	4	43	1.61
10967776--10967802	2	13.5	2	100	0	54	51	48	0	0	1.00
10974997--10975062	25	2.5	27	80	4	82	69	6	0	24	1.10
10979505--10979768	143	1.8	143	82	0	339	32	11	14	41	1.81
10981904--10981944	18	2.3	18	91	0	64	46	31	0	21	1.52
10981887--10981944	24	2.4	24	82	8	73	48	31	0	20	1.50
10981881--10981958	24	3.5	22	73	23	65	43	29	1	25	1.63
10986252--10986290	16	2.4	16	82	0	51	74	0	0	25	0.82
10986550--10986592	20	2.2	19	87	4	59	0	30	0	69	0.88
10994523--10994698	88	2.0	88	94	0	307	34	19	20	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74