genome.fa.s212.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  71  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13845251--13845285	17	1.9	19	88	11	56	45	0	0	54	0.99
13845797--13845978	79	2.3	79	95	0	319	20	18	23	36	1.95
13846073--13846121	5	9.8	5	79	16	57	63	0	0	36	0.95
13846165--13846189	12	2.1	12	100	0	50	36	0	0	64	0.94
13846265--13846315	16	3.2	15	81	10	57	56	0	0	43	0.99
13846259--13846315	16	3.6	16	81	11	55	56	0	0	43	0.99
13847062--13847156	22	4.3	21	74	13	75	37	5	2	54	1.35
13847556--13847603	24	1.9	24	84	16	62	47	0	0	52	1.00
13849818--13849864	2	24.5	2	91	8	80	51	0	0	48	1.00
13850199--13850318	53	2.3	53	89	1	179	20	6	20	52	1.68
13852427--13852500	17	4.2	17	66	19	53	28	1	6	63	1.28
13852461--13852522	21	3.0	20	75	15	63	38	3	1	56	1.25
13852871--13853007	67	2.0	67	80	2	150	36	12	3	47	1.59
13853733--13853796	19	3.4	18	79	12	67	26	3	7	62	1.38
13854224--13856366	221	9.8	221	82	4	2220	31	12	8	47	1.71
13855753--13855794	22	2.0	21	90	4	66	23	11	9	54	1.66
13854224--13856366	662	3.3	656	81	5	2516	31	12	8	47	1.71
13858431--13858574	63	2.3	62	81	10	152	38	13	11	36	1.81
13858726--13858760	18	1.9	18	100	0	70	40	0	11	48	1.39
13860396--13860440	21	2.1	21	84	8	56	66	6	0	26	1.16
13862588--13863042	249	1.8	248	81	6	571	36	13	14	36	1.85
13871162--13871232	30	2.4	28	76	21	74	38	2	8	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13871353--13871521	54	3.1	53	77	5	144	47	10	12	28	1.74
13872221--13872250	13	2.3	13	94	0	51	90	6	3	0	0.56
13872612--13872645	11	2.8	12	91	8	52	44	0	0	55	0.99
13873171--13873208	18	2.1	17	90	9	58	60	0	5	34	1.19
13873908--13873966	21	2.7	22	76	5	66	44	6	3	45	1.47
13875217--13875281	21	3.2	21	66	24	57	49	1	10	38	1.47
13875218--13875281	20	3.2	20	66	24	53	48	1	10	39	1.48
13875220--13875284	18	3.4	18	69	22	51	46	1	10	41	1.48
13875293--13875372	37	2.2	37	90	4	126	50	6	2	41	1.41
13876184--13876232	22	2.2	23	85	10	66	59	4	0	36	1.17
13877033--13879620	220	11.9	220	79	6	2343	31	11	8	47	1.71
13877032--13879620	661	4.0	660	81	4	2766	31	11	8	47	1.71
13877032--13879620	440	5.9	439	81	4	2663	31	11	8	47	1.71
13883378--13883553	88	2.0	88	100	0	352	23	36	9	30	1.86
13884905--13884959	1	55.0	1	81	0	65	90	9	0	0	0.44
13885237--13885305	32	2.2	33	92	5	115	57	2	13	26	1.49
13885391--13885530	66	2.1	66	83	8	171	45	14	4	36	1.64
13885845--13885890	21	2.2	21	88	7	67	23	10	0	65	1.24
13886476--13886509	17	2.0	17	94	0	59	17	5	2	73	1.16
13886557--13886581	10	2.5	10	100	0	50	72	0	0	28	0.86
13887440--13887525	33	2.6	33	85	5	104	45	1	2	51	1.21
13891572--13891632	18	3.6	18	72	14	58	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13891572--13891636	17	3.8	17	70	11	51	50	0	0	49	1.00
13891715--13891793	2	40.0	2	81	7	63	49	1	2	46	1.23
13892351--13892381	5	6.2	5	100	0	62	80	0	0	19	0.71
13895758--13895920	85	1.9	85	97	0	308	30	17	18	33	1.94
13908465--13908515	14	3.7	13	80	12	57	3	9	1	84	0.83
13910283--13910322	20	1.9	22	90	10	66	30	0	5	65	1.14
13910773--13910811	7	5.6	7	96	0	60	12	5	0	82	0.83
13910757--13910811	20	2.7	21	80	5	67	10	10	1	76	1.10
13910766--13910811	21	2.2	20	88	3	65	10	4	2	82	0.89
13915673--13915733	30	2.1	28	82	11	70	8	14	6	70	1.32
13915888--13915935	19	2.5	19	82	3	60	8	6	12	72	1.26
13916334--13916508	43	4.0	43	84	2	208	43	12	12	32	1.79
13916636--13916679	22	2.0	22	82	8	54	56	9	9	25	1.59
13916658--13916705	17	2.8	17	78	15	53	50	6	12	31	1.65
13918579--13918617	16	2.5	15	84	15	53	10	12	0	76	1.01
13922249--13922280	3	10.7	3	93	0	55	34	3	0	62	1.11
13922487--13922521	17	2.1	16	94	5	61	37	2	0	60	1.12
13924644--13924806	71	2.3	71	82	4	195	48	13	18	19	1.81
13924693--13924954	36	7.4	36	74	10	180	53	13	16	17	1.73
13924751--13924954	71	2.9	70	75	5	185	54	14	14	16	1.72
13924693--13924947	107	2.4	106	81	3	271	53	13	16	16	1.73
13924783--13925027	71	3.4	71	78	6	199	56	13	12	17	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13924871--13925060	36	5.3	36	77	8	156	57	11	13	18	1.65
13925357--13925508	36	4.3	34	73	11	117	51	16	16	15	1.76
13925357--13925598	71	3.4	71	79	8	233	51	16	16	15	1.77
13925460--13925654	106	1.8	107	80	3	232	49	11	20	18	1.79
13925357--13925655	35	8.5	35	72	9	142	49	14	18	17	1.79
13925647--13925762	36	3.2	36	75	8	112	50	10	21	18	1.76
13926148--13926176	14	2.1	14	100	0	58	44	6	20	27	1.77
13926463--13926689	80	2.8	81	79	2	217	33	11	14	40	1.83
13927667--13928064	138	2.8	140	76	9	398	18	17	8	54	1.68
13930737--13930762	2	13.0	2	100	0	52	50	0	0	50	1.00
13937607--13937834	53	4.2	55	76	8	200	35	11	5	47	1.62
13938105--13938136	3	10.7	3	100	0	64	68	0	0	31	0.90
13938590--13938625	19	1.9	19	88	5	56	44	2	16	36	1.63
13939192--13939249	11	5.5	10	74	11	53	72	3	3	20	1.14
13939193--13939249	22	2.7	21	82	12	71	71	3	3	21	1.15
13939966--13940160	52	3.7	53	77	11	186	36	8	6	48	1.59
13940097--13940206	53	2.1	53	81	10	127	37	8	6	48	1.59
13940128--13940335	115	1.8	114	85	1	290	38	8	6	46	1.60
13941593--13941665	26	2.8	26	69	10	67	60	5	13	20	1.53
13941969--13942006	20	1.9	20	88	0	58	21	7	5	65	1.38
13941850--13942099	126	2.0	126	91	0	401	30	12	10	47	1.73
13942478--13942518	21	1.9	22	85	5	57	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13947682--13947737	26	2.1	26	86	3	76	62	0	0	37	0.95
13947910--13947952	8	5.2	8	78	15	52	27	0	0	72	0.85
13948734--13948785	19	2.8	19	75	16	56	3	17	1	76	1.02
13949190--13949490	112	2.7	108	76	9	275	34	11	7	45	1.70
13952660--13952705	23	2.0	22	84	12	58	26	0	8	65	1.21
13957466--13957709	129	1.9	124	79	9	269	43	4	8	44	1.53
13957769--13957944	62	2.9	60	80	10	187	42	4	11	42	1.61
13957869--13957919	26	1.9	27	84	4	68	37	3	13	45	1.63
13958120--13958203	34	2.5	34	86	3	107	42	8	11	36	1.72
13958215--13958292	27	2.9	27	92	5	124	58	0	7	33	1.26
13961672--13961729	25	2.4	22	74	23	53	46	1	6	44	1.40
13961684--13961733	25	2.1	25	85	7	68	50	2	6	42	1.38
13961879--13961938	29	2.1	28	81	9	68	56	5	10	28	1.53
13965427--13965474	16	2.9	16	76	14	53	14	4	22	58	1.54
13965528--13965583	26	2.1	27	80	9	62	23	1	17	57	1.50
13966019--13966109	11	7.5	11	71	19	58	7	6	4	81	0.98
13966038--13966107	27	2.6	27	84	10	90	8	7	5	78	1.09
13966038--13966115	27	3.0	27	83	10	83	7	8	6	76	1.14
13966194--13966232	19	2.0	20	95	5	71	33	5	10	51	1.58
13966207--13966290	24	3.5	24	69	18	68	32	3	10	53	1.53
13966191--13966240	19	2.6	19	87	6	66	34	4	10	52	1.54
13966255--13966321	18	3.6	18	78	11	80	31	2	11	53	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13966254--13966348	39	2.3	42	89	7	142	28	2	11	57	1.45
13966254--13966367	39	2.8	40	82	10	119	29	3	11	55	1.52
13966438--13966493	19	2.9	19	86	2	76	33	3	8	53	1.49
13971746--13971805	14	4.5	13	79	6	50	70	1	13	15	1.26
13972811--13973016	47	4.5	45	74	7	148	38	8	12	40	1.73
13972951--13973025	22	3.3	22	69	7	60	33	6	17	42	1.75
13972811--13973146	45	7.3	46	70	10	154	38	8	13	40	1.74
13973333--13973367	18	1.9	18	88	0	52	37	11	17	34	1.85
13973427--13973466	17	2.4	17	91	0	62	30	10	15	45	1.78
13973442--13973506	33	2.0	33	84	0	85	35	15	9	40	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74