genome.fa.s212.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  6  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1475645--1475749	54	2.0	52	88	7	158	45	9	12	32	1.74
1478209--1478282	36	2.1	36	100	0	148	35	10	13	40	1.80
1482731--1482813	22	3.8	21	74	19	80	45	15	7	31	1.73
1482731--1482816	21	3.9	22	76	10	86	45	16	6	31	1.74
1494417--1494475	6	9.8	6	78	7	57	3	45	0	50	1.18
1494431--1494472	9	4.7	9	87	0	66	0	45	0	54	0.99
1499035--1499073	2	19.5	2	100	0	78	48	0	0	51	1.00
1507523--1507612	49	1.9	44	84	8	108	42	7	20	30	1.80
1508735--1508776	6	6.8	6	79	15	50	50	0	0	50	1.00
1510010--1510073	24	2.7	24	87	4	94	40	0	0	59	0.97
1512466--1512868	137	3.0	136	89	5	610	26	17	13	42	1.86
1516162--1516591	214	2.0	216	86	6	607	36	17	12	33	1.87
1531115--1531173	30	1.9	31	89	3	93	37	13	16	32	1.88
1533579--1533636	20	3.0	20	74	2	55	48	5	3	43	1.42
1533745--1533814	34	2.0	35	86	2	97	40	4	7	48	1.50
1540568--1540612	23	2.0	21	91	8	72	53	0	0	46	1.00
1540770--1540813	22	2.0	23	86	13	65	54	2	4	38	1.33
1543458--1543567	42	2.6	42	94	1	184	39	25	7	28	1.82
1547992--1548020	8	3.8	8	90	9	51	0	10	0	89	0.48
1547992--1548020	15	1.9	15	100	0	58	0	10	0	89	0.48
1550223--1550269	25	2.0	24	87	8	69	21	19	8	51	1.73
1553838--1553871	15	2.2	16	94	5	61	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1553830--1553877	15	2.8	18	75	21	57	43	0	0	56	0.99
1560856--1560888	3	11.0	3	100	0	66	66	0	33	0	0.92
1568100--1568162	31	2.0	33	84	6	85	26	11	1	60	1.40
1569664--1569708	23	2.0	23	86	4	65	42	0	0	57	0.98
1569748--1569801	20	2.6	21	75	24	60	40	0	1	57	1.09
1569748--1569812	19	3.2	20	77	18	64	43	0	1	55	1.09
1576784--1576852	34	2.0	34	91	0	111	33	20	14	31	1.92
1584407--1584482	40	1.9	40	82	12	95	53	1	0	44	1.08
1585213--1585256	19	2.3	19	84	4	52	22	6	2	68	1.25
1586430--1586482	22	2.5	21	76	11	54	50	0	0	49	1.00
1605895--1606021	64	2.0	64	95	3	229	37	10	25	26	1.88
1605992--1606075	39	2.2	39	93	0	141	30	10	33	25	1.90
1607455--1607479	8	3.1	8	100	0	50	24	12	64	0	1.27
1608456--1608505	23	2.2	23	92	0	82	40	8	0	52	1.31
1612751--1612787	2	18.5	2	94	0	65	0	48	2	48	1.15
1625430--1625522	47	2.0	46	83	10	118	50	1	1	47	1.15
1633699--1633723	1	25.0	1	100	0	50	100	0	0	0	0.00
1652824--1652867	21	2.1	21	91	0	70	47	2	2	47	1.27
1652832--1652880	21	2.5	21	87	9	68	48	0	0	51	1.00
1654252--1654299	14	3.4	13	80	11	51	45	2	2	50	1.25
1654452--1654509	20	2.8	20	76	7	55	60	0	1	37	1.07
1658120--1658184	34	1.9	33	81	9	78	52	1	1	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1662495--1662536	2	21.0	2	100	0	84	50	0	0	50	1.00
1664941--1665109	84	2.0	84	98	0	329	31	21	14	31	1.94
1664961--1665095	42	3.2	42	65	19	118	30	22	17	30	1.96
1669666--1669690	11	2.3	11	100	0	50	52	12	16	20	1.75
1675933--1675984	21	2.5	21	90	6	79	50	0	0	50	1.00
1675933--1675984	22	2.5	22	93	6	90	50	0	0	50	1.00
1675972--1676030	16	3.7	16	74	12	50	64	3	0	32	1.10
1676989--1677020	15	2.1	15	94	0	55	50	21	12	15	1.77
1677383--1677459	24	3.2	24	86	0	109	27	49	7	15	1.72
1677418--1677532	24	4.8	24	69	4	70	26	48	10	13	1.75
1677427--1677531	48	2.2	48	85	0	138	27	46	11	14	1.78
1707956--1707985	15	2.0	15	100	0	60	26	13	13	46	1.80
1712552--1712620	34	2.0	34	100	0	138	26	5	33	34	1.80
1716239--1716272	14	2.4	14	90	9	52	47	0	2	50	1.16
1716265--1716317	22	2.5	22	74	17	58	43	1	1	52	1.23
1722482--1722518	14	2.6	14	88	12	58	56	0	0	43	0.99
1722483--1722528	15	3.1	14	87	12	58	54	0	0	45	0.99
1726231--1726261	2	15.5	2	100	0	62	51	0	0	48	1.00
1727621--1727645	3	8.3	3	100	0	50	36	0	0	64	0.94
1728640--1728666	7	3.9	7	100	0	54	29	11	29	29	1.91
1729419--1729451	15	2.2	15	94	0	57	24	48	15	12	1.78
1729880--1729915	3	12.0	3	100	0	72	0	33	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1730462--1730491	14	2.2	14	94	5	53	66	0	0	33	0.92
1746323--1746585	129	2.0	129	87	4	379	26	19	30	24	1.98
1747565--1747600	14	2.6	14	90	0	54	50	2	2	44	1.31
1758295--1758330	18	2.1	18	89	5	56	47	13	5	33	1.67
1760027--1760136	23	5.2	21	74	24	90	17	6	4	71	1.24
1760043--1760121	20	3.9	19	76	19	72	18	6	3	70	1.24
1760024--1760119	43	2.2	42	83	8	122	18	5	4	71	1.21
1760090--1760125	17	2.1	17	94	0	63	16	8	5	69	1.33
1760024--1760138	43	2.7	42	83	10	121	17	6	4	71	1.25
1760954--1761006	27	2.0	27	81	7	63	20	0	7	71	1.10
1761107--1761518	59	6.8	58	80	11	395	45	7	11	35	1.69
1761107--1761516	120	3.4	119	83	9	440	46	7	11	35	1.68
1761443--1761477	19	1.9	18	88	11	54	45	11	0	42	1.40
1769923--1769961	8	4.8	8	87	6	60	76	7	5	10	1.13
1769922--1769971	17	2.9	18	82	14	61	78	6	6	10	1.10
1769902--1769944	19	2.3	19	83	0	50	76	4	6	11	1.13
1769902--1769971	27	2.6	25	80	12	86	75	4	8	11	1.16
1770959--1771226	42	6.5	40	84	5	313	24	16	20	38	1.92
1771231--1771436	43	4.9	41	86	3	250	23	16	21	38	1.93
1771085--1771361	145	1.9	145	90	5	443	24	17	20	37	1.94
1771759--1771830	26	2.7	27	85	8	87	33	0	2	63	1.08
1771809--1771909	44	2.3	43	81	11	118	23	4	4	66	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771806--1771914	22	5.2	20	69	21	71	22	4	4	68	1.26
1772767--1772813	24	2.0	24	82	0	58	14	0	6	78	0.93
1772942--1773206	57	4.5	57	83	7	336	44	7	12	35	1.71
1772918--1773206	117	2.5	117	87	3	422	45	7	12	34	1.70
1772942--1773206	59	4.5	59	84	4	340	44	7	12	35	1.71
1777457--1777493	12	3.2	12	85	14	51	43	0	0	56	0.99
1778440--1778478	18	2.2	18	86	9	53	33	0	0	66	0.92
1782757--1782799	22	1.9	22	85	4	59	39	9	4	46	1.57
1789050--1789080	15	2.1	15	100	0	62	45	0	32	22	1.53
1792574--1792603	14	2.1	14	100	0	60	20	0	0	80	0.72
1792631--1792672	3	14.0	3	100	0	84	33	0	0	66	0.92
1793391--1793437	21	2.2	22	78	17	55	61	12	23	2	1.42
1798842--1798874	14	2.4	14	100	0	66	84	0	0	15	0.61
1804264--1804338	38	1.9	39	91	2	125	37	1	12	49	1.48
1804837--1804884	24	2.0	24	83	0	60	45	8	4	41	1.53
1805694--1805745	23	2.2	24	80	19	65	25	5	17	51	1.67
1805700--1805744	23	1.9	24	86	13	67	24	6	15	53	1.66
1809506--1809589	20	4.0	22	73	21	65	48	0	0	51	1.00
1819741--1819778	7	5.4	7	100	0	76	42	26	15	15	1.87
1820504--1820534	2	15.5	2	100	0	62	51	0	0	48	1.00
1821598--1821631	18	1.9	18	88	5	52	50	0	0	50	1.00
1834048--1834078	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835136--1835169	18	1.9	18	88	5	52	50	0	0	50	1.00
1843985--1844197	105	2.0	105	94	0	372	38	20	9	30	1.84
1848831--1848864	17	2.0	17	94	0	59	67	5	5	20	1.33
1851386--1851486	31	3.3	31	78	10	100	49	0	0	49	1.07
1851412--1851504	31	3.1	29	76	14	73	51	0	0	48	1.00
1851406--1851491	38	2.3	38	84	8	104	53	0	0	46	1.00
1851505--1851553	24	2.0	24	88	0	71	32	0	2	65	1.04
1851519--1851552	15	2.3	15	89	0	50	26	0	0	73	0.83
1851900--1851927	14	2.0	14	100	0	56	28	21	0	50	1.49
1852508--1852534	10	2.7	10	100	0	54	92	0	0	7	0.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74