genome.fa.s212.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  56  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11190406--11190491	14	6.4	13	72	15	59	13	4	0	81	0.84
11190395--11190490	25	3.9	23	75	14	77	13	5	0	81	0.86
11190396--11190491	20	4.8	20	72	8	79	13	5	0	81	0.86
11199800--11199833	11	3.1	11	86	0	50	20	11	14	52	1.73
11203053--11203096	11	3.8	11	77	11	52	63	0	0	36	0.95
11205293--11205335	22	2.0	21	82	13	52	67	0	6	25	1.15
11205847--11207081	234	5.3	235	77	5	925	51	5	10	31	1.60
11206821--11206868	21	2.3	20	75	10	51	56	0	6	37	1.25
11205364--11205847	231	2.0	234	78	7	309	48	4	13	32	1.64
11205851--11207069	467	2.6	466	78	4	1086	51	5	10	31	1.60
11207819--11207843	2	12.5	2	100	0	50	48	0	0	52	1.00
11208804--11208845	16	2.6	16	88	7	59	83	2	9	4	0.88
11213355--11213389	3	11.7	3	100	0	70	31	0	0	68	0.90
11215517--11215548	3	10.7	3	93	0	55	31	3	0	65	1.08
11216571--11216608	10	3.7	11	83	16	55	65	0	0	34	0.93
11220351--11220407	17	3.2	17	73	11	53	24	7	0	68	1.14
11220381--11220428	22	2.2	21	82	10	53	27	4	2	66	1.21
11220692--11220736	22	2.0	22	83	8	56	20	4	15	60	1.52
11221184--11221233	9	5.4	9	73	21	50	18	2	2	78	0.95
11222870--11222957	37	2.3	38	84	1	106	53	6	3	36	1.44
11223288--11223435	59	2.5	59	80	4	174	57	18	2	21	1.53
11223587--11223619	15	2.3	15	89	5	50	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11229262--11229335	36	2.1	36	92	0	121	40	8	1	50	1.41
11241173--11241237	32	2.1	29	86	13	87	52	3	0	44	1.16
11241175--11241233	14	4.0	13	75	25	55	54	3	0	42	1.17
11244387--11244424	19	2.0	19	85	10	51	39	0	2	57	1.12
11246239--11246264	2	13.0	2	100	0	52	50	0	0	50	1.00
11247744--11247795	26	2.0	27	82	17	65	32	1	1	63	1.16
11251197--11251331	62	2.2	62	90	0	207	32	18	18	30	1.95
11252323--11252378	25	2.3	24	80	14	62	42	1	0	55	1.10
11257456--11257593	63	2.2	64	88	1	197	33	18	18	29	1.95
11258590--11258641	25	2.1	25	82	10	63	44	1	0	53	1.11
11268206--11268274	2	34.0	2	76	13	52	52	5	1	40	1.34
11268972--11269016	22	2.0	22	100	0	90	53	0	33	13	1.40
11269766--11269820	20	2.6	21	80	8	58	67	5	0	27	1.12
11274348--11274388	14	2.9	14	89	10	66	78	7	0	14	0.96
11274352--11274428	14	5.1	14	73	17	55	79	7	5	7	1.06
11274676--11274702	14	1.9	14	100	0	54	81	7	0	11	0.87
11274672--11274713	20	2.1	20	82	8	50	78	9	2	9	1.05
11275665--11275706	21	2.0	21	85	4	57	54	0	0	45	0.99
11275827--11275894	29	2.3	29	85	5	84	47	29	0	23	1.52
11275879--11275946	15	4.5	15	80	14	59	48	32	0	19	1.49
11276218--11276257	13	2.9	14	81	7	55	60	0	2	37	1.11
11279558--11280047	255	1.9	254	89	1	759	18	28	11	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11287024--11287062	9	4.4	9	80	6	53	35	2	7	53	1.43
11287000--11287066	26	2.6	26	80	0	80	32	4	7	55	1.48
11287024--11287065	17	2.4	18	88	4	59	38	4	7	50	1.51
11287032--11287067	18	2.1	17	94	5	63	38	5	5	50	1.49
11302956--11303016	25	2.4	25	78	10	63	44	1	9	44	1.47
11308482--11308524	14	2.9	14	79	6	50	23	2	4	69	1.18
11311084--11311110	3	9.0	3	100	0	54	33	0	0	66	0.92
11311112--11311155	17	2.8	16	83	10	63	0	13	0	86	0.57
11311112--11311152	7	5.9	7	81	18	50	0	14	0	85	0.60
11312271--11312313	20	2.1	21	83	12	54	74	4	0	20	1.00
11314513--11314573	22	2.6	25	80	12	60	36	1	0	62	1.05
11315422--11315446	13	1.9	13	100	0	50	56	0	8	36	1.29
11315429--11315486	20	2.9	20	81	0	71	55	6	5	32	1.49
11315485--11315548	19	3.4	19	76	8	76	54	12	7	25	1.64
11315554--11315681	24	5.2	24	75	9	96	51	8	4	35	1.53
11315601--11315642	19	2.2	20	86	4	59	45	7	4	42	1.52
11315860--11315926	7	9.6	7	78	12	59	80	2	1	14	0.90
11315893--11315932	18	2.2	18	95	0	71	80	2	2	15	0.93
11316078--11316132	2	27.5	2	92	0	92	0	45	0	54	0.99
11316960--11316986	12	2.2	12	100	0	54	62	7	0	29	1.22
11316961--11316994	17	1.9	18	88	5	52	58	11	0	29	1.33
11320523--11320548	12	2.2	12	100	0	52	34	15	15	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11320488--11320553	34	1.9	35	81	9	82	34	16	19	28	1.94
11320561--11320616	21	2.6	21	80	8	60	23	19	16	41	1.90
11325757--11325784	14	2.0	14	100	0	56	42	0	0	57	0.99
11329638--11329670	15	2.2	15	94	0	57	39	6	18	36	1.75
11329665--11329696	16	2.0	16	93	0	55	34	0	21	43	1.53
11331568--11331650	28	3.0	29	82	8	109	38	9	19	32	1.84
11334326--11334358	15	2.2	15	94	0	57	39	6	18	36	1.75
11334353--11334384	16	2.0	16	93	0	55	34	0	21	43	1.53
11342122--11342183	16	3.6	16	76	16	61	38	1	6	53	1.37
11342128--11342186	12	4.9	12	72	15	50	40	1	5	52	1.33
11342137--11342335	20	10.4	20	71	15	145	35	4	9	50	1.55
11342122--11342245	36	3.4	36	79	9	117	37	2	7	53	1.42
11342160--11342316	39	4.0	39	83	4	192	34	4	9	51	1.55
11342137--11342316	78	2.3	78	83	4	215	35	4	9	50	1.55
11343682--11343707	10	2.6	10	100	0	52	46	0	0	53	1.00
11345559--11345586	11	2.5	11	100	0	56	14	0	7	78	0.95
11346359--11346435	12	6.4	13	76	20	71	35	0	0	64	0.93
11346372--11346431	20	3.2	20	71	23	67	33	0	0	66	0.92
11346372--11346434	10	6.1	10	78	10	56	33	0	0	66	0.92
11347291--11347429	62	2.2	62	87	0	197	33	21	17	27	1.96
11348168--11348543	194	1.9	196	96	1	702	36	14	11	36	1.83
11348812--11348858	18	2.6	17	77	9	58	27	4	0	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11348655--11349062	208	2.0	207	81	6	486	35	12	7	44	1.71
11349162--11349201	14	3.0	14	86	13	50	72	0	0	27	0.85
11349236--11349267	13	2.5	13	94	0	55	0	25	46	28	1.53
11350245--11350307	20	3.3	19	78	13	76	19	4	7	68	1.33
11350256--11350309	17	3.0	17	72	15	54	18	5	9	66	1.39
11350504--11350617	49	2.3	49	90	3	185	31	26	16	25	1.97
11351447--11351491	20	2.2	20	84	0	54	33	28	22	15	1.95
11351828--11351866	21	1.9	20	89	5	60	7	7	5	79	1.05
11351822--11351874	27	1.9	27	81	11	63	7	5	5	81	1.00
11351943--11352298	60	5.9	59	86	9	440	46	8	12	32	1.72
11356161--11356234	33	2.2	34	81	11	91	74	0	16	9	1.07
11356171--11356237	31	2.0	33	80	11	75	76	0	16	7	1.01
11357455--11357909	41	11.1	41	89	4	616	23	18	23	35	1.96
11357916--11358019	1	104.0	1	74	0	64	84	6	0	8	0.77
11357916--11358018	31	3.4	31	77	11	108	84	6	0	8	0.78
11357920--11358012	9	10.7	9	76	21	83	83	7	0	8	0.80
11357918--11358019	10	10.7	9	76	15	89	84	6	0	8	0.78
11359311--11359336	1	26.0	1	100	0	52	0	0	0	100	0.00
11359351--11359393	12	3.5	12	84	6	50	13	2	4	79	1.00
11359351--11359405	25	2.2	25	83	0	65	18	1	7	72	1.16
11359437--11359789	60	5.9	59	84	9	402	45	9	12	32	1.74
11360268--11360577	47	6.6	47	86	8	418	33	23	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11360268--11360577	141	2.2	140	92	1	521	33	23	15	27	1.95
11370961--11370995	13	2.7	13	86	0	52	5	25	42	25	1.77
11371984--11372027	20	2.2	20	88	4	63	18	4	6	70	1.27
11372354--11372382	14	2.1	14	100	0	58	51	0	0	48	1.00
11373180--11373243	21	3.2	21	68	22	57	51	0	1	46	1.10
11373188--11373230	17	2.7	16	89	10	70	51	0	2	46	1.13
11373395--11373454	26	2.4	25	88	8	86	50	3	1	45	1.28
11375020--11375063	22	2.0	22	86	0	61	47	13	4	34	1.63
11375107--11375194	28	3.2	26	69	16	70	38	10	2	48	1.50
11375044--11375222	57	3.1	55	81	15	161	36	7	3	51	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74