genome.fa.s212.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  11  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3132650--3132845	105	1.9	104	88	3	295	22	20	8	48	1.76
3132869--3133081	106	2.0	106	100	0	426	30	15	21	32	1.94
3139623--3139659	2	18.5	2	100	0	74	51	0	48	0	1.00
3143425--3143455	2	15.5	2	100	0	62	48	0	0	51	1.00
3149272--3149320	24	2.0	25	96	4	91	40	24	14	20	1.89
3168448--3168499	22	2.3	23	87	9	72	50	0	0	50	1.00
3177545--3177588	22	2.0	21	82	4	52	54	2	0	43	1.12
3179952--3179992	16	2.6	16	96	0	73	41	0	0	58	0.98
3181296--3181338	5	8.2	5	82	14	52	74	2	4	18	1.10
3182732--3182757	13	2.0	13	100	0	52	46	15	15	23	1.83
3189177--3189227	24	2.1	24	82	13	61	35	3	0	60	1.15
3197821--3197873	28	2.0	27	85	7	72	37	0	1	60	1.08
3198840--3198870	4	7.8	4	92	0	53	25	22	3	48	1.66
3199802--3199837	2	18.5	2	88	5	56	50	0	0	50	1.00
3202908--3202960	22	2.6	20	82	8	54	47	0	0	52	1.00
3202962--3203025	32	2.0	33	84	9	87	65	1	0	32	1.02
3202984--3203063	24	3.4	24	73	13	67	67	3	1	27	1.15
3202986--3203040	25	2.1	28	83	10	71	69	3	0	27	1.05
3203324--3203369	18	2.7	17	90	9	76	63	0	0	36	0.95
3213766--3213797	17	1.9	16	93	6	55	12	0	0	87	0.54
3216022--3216059	17	2.2	18	85	4	51	31	10	5	52	1.58
3216594--3216636	12	3.4	13	78	15	54	69	11	0	18	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3216595--3216638	14	3.6	12	82	11	54	68	11	0	20	1.20
3217483--3217526	6	7.3	6	100	0	88	15	31	0	52	1.44
3218217--3218255	18	2.1	19	85	4	53	61	0	0	38	0.96
3218659--3218701	22	2.0	21	83	16	54	55	2	2	39	1.25
3218869--3218919	14	3.6	14	76	10	50	52	3	1	41	1.31
3218892--3218921	14	2.1	15	93	6	53	40	6	3	50	1.45
3219855--3219884	14	2.2	13	94	5	51	60	13	6	20	1.55
3230200--3230250	26	2.0	26	88	3	77	70	0	0	29	0.87
3230196--3230233	11	3.5	11	89	7	60	68	0	0	31	0.90
3230204--3230254	13	4.2	12	74	20	52	68	0	0	31	0.90
3231055--3231094	17	2.2	18	82	13	55	57	0	2	40	1.12
3231498--3231544	17	2.6	19	80	13	62	51	6	0	42	1.27
3235459--3235505	7	6.7	7	80	0	58	12	4	2	80	0.94
3236016--3236054	20	1.9	20	84	5	51	17	5	10	66	1.39
3241175--3241377	39	4.9	40	75	16	198	25	4	34	34	1.78
3241212--3241386	90	1.9	90	90	2	280	26	4	35	33	1.77
3255966--3256029	24	2.8	24	73	15	64	59	0	0	40	0.97
3255969--3256034	33	2.0	33	82	8	82	56	0	0	43	0.99
3260609--3260662	21	2.6	21	87	0	81	33	7	9	50	1.62
3267462--3267509	19	2.5	19	75	3	51	50	0	0	50	1.00
3268004--3268038	15	2.4	14	86	9	52	42	0	0	57	0.99
3268014--3268043	15	1.9	16	93	6	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3268168--3268227	31	2.0	29	87	6	84	33	0	1	65	1.03
3281224--3281282	28	2.1	28	81	6	66	49	3	0	47	1.18
3281811--3281860	24	2.0	25	84	3	66	54	0	0	46	1.00
3281812--3281891	26	3.0	27	80	9	83	53	0	0	46	1.00
3281830--3281881	13	3.8	14	75	12	54	55	0	0	44	0.99
3281817--3281886	24	2.8	25	74	19	65	54	0	0	45	0.99
3284180--3284223	12	3.7	12	82	8	54	31	0	2	65	1.05
3287915--3287947	16	2.0	17	94	5	59	0	9	12	78	0.95
3288856--3288919	26	2.5	26	100	0	128	59	0	0	40	0.97
3288856--3288938	13	6.3	13	76	5	78	62	0	0	37	0.95
3289993--3290045	18	3.0	17	75	8	52	3	5	22	67	1.28
3290624--3290680	30	1.9	30	85	0	78	45	0	1	52	1.11
3297520--3297827	62	5.0	61	70	8	181	38	15	13	31	1.87
3297684--3297857	62	2.8	62	81	10	169	43	16	12	28	1.84
3297738--3297858	62	2.0	62	90	3	190	44	14	13	27	1.83
3298363--3298480	62	1.9	61	82	5	148	39	7	20	32	1.81
3298389--3298523	62	2.2	62	84	0	171	42	10	18	28	1.83
3302391--3302529	52	2.7	51	81	6	156	36	7	17	38	1.77
3302396--3302531	50	2.7	51	81	4	150	37	7	17	37	1.78
3302807--3302847	21	2.0	21	85	0	55	26	9	12	51	1.70
3303021--3303057	14	2.6	14	91	0	56	16	0	8	75	1.02
3303016--3303087	23	3.0	24	73	18	69	20	5	4	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3304030--3304106	37	2.1	37	85	4	102	16	11	7	63	1.50
3304030--3304148	45	2.9	40	76	17	120	18	11	7	62	1.52
3306999--3307130	51	2.6	50	80	10	153	57	9	14	18	1.64
3307446--3307478	12	3.0	11	91	8	50	78	0	21	0	0.75
3308487--3308530	17	2.6	17	81	0	52	22	15	6	54	1.65
3308592--3308810	86	2.5	86	85	0	294	29	17	15	37	1.90
3308669--3308704	17	2.1	17	89	0	54	30	13	19	36	1.91
3310161--3310250	46	1.9	46	82	6	110	45	12	5	36	1.65
3311883--3311951	26	2.6	26	88	2	102	62	2	2	31	1.25
3315456--3315494	13	3.0	13	81	11	53	35	0	0	64	0.94
3319580--3319610	2	16.0	2	93	6	55	48	0	0	51	1.00
3321989--3322022	18	2.0	17	88	11	52	64	0	5	29	1.17
3323934--3323972	19	2.1	19	85	0	51	58	2	7	30	1.39
3323935--3323996	29	2.1	29	85	5	81	54	4	6	33	1.47
3324062--3324112	25	2.0	25	84	7	66	58	1	1	37	1.20
3324962--3324992	2	15.5	2	100	0	62	48	0	0	51	1.00
3329497--3329529	2	16.5	2	100	0	66	51	0	0	48	1.00
3330450--3330495	3	15.3	3	100	0	92	67	0	0	32	0.91
3338623--3338655	14	2.4	14	90	10	50	60	0	0	39	0.97
3342115--3342186	37	1.9	38	91	2	119	38	15	19	26	1.91
3342210--3342241	16	2.0	16	93	0	55	53	15	12	18	1.73
3342212--3342250	16	2.4	16	82	0	51	58	12	12	15	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3346078--3346103	13	2.0	13	100	0	52	23	30	7	38	1.83
3354522--3354580	22	2.6	22	71	12	57	61	3	0	35	1.13
3355228--3355279	19	2.8	19	72	13	54	50	0	0	50	1.00
3355329--3355385	23	2.5	23	83	8	64	42	1	0	56	1.10
3357097--3357158	32	1.9	32	90	6	99	46	3	0	50	1.17
3357273--3357312	11	3.3	12	82	10	55	32	2	0	65	1.06
3358920--3358949	15	1.9	16	93	6	53	0	0	10	90	0.47
3370649--3370695	24	2.0	24	95	0	85	23	8	44	23	1.80
3383947--3383973	2	13.5	2	100	0	54	51	0	0	48	1.00
3385278--3385339	31	2.0	31	96	3	117	43	19	14	22	1.87
3386293--3386318	12	2.2	12	100	0	52	69	0	0	30	0.89
3387491--3387520	12	2.4	13	94	5	53	70	3	0	26	1.03
3387921--3387965	22	2.0	22	91	0	72	33	11	13	42	1.79
3389056--3389087	16	2.0	16	100	0	64	31	6	31	31	1.82
3392959--3393006	25	1.9	25	82	0	60	37	25	10	27	1.88
3392927--3393115	102	1.9	102	83	0	252	43	22	7	25	1.80
3393928--3394867	188	5.0	185	77	8	863	40	11	11	36	1.77
3393926--3394940	374	2.7	365	79	8	1083	41	11	11	36	1.77
3402952--3402983	2	16.0	2	100	0	64	50	0	0	50	1.00
3403053--3403089	2	18.5	2	100	0	74	48	0	0	51	1.00
3402952--3403159	106	2.0	105	98	0	398	40	18	6	34	1.76
3406592--3406634	21	2.0	22	86	8	63	20	4	4	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3411574--3411625	18	2.8	18	82	5	59	73	7	3	15	1.21
3412430--3412474	3	15.0	3	100	0	90	66	0	0	33	0.92
3412966--3413004	18	2.2	18	86	9	53	38	10	12	38	1.78
3412872--3412990	35	3.5	32	72	14	89	36	16	13	32	1.88
3412950--3413080	17	7.5	17	70	16	63	38	16	10	34	1.83
3413232--3413369	19	7.6	19	74	12	112	46	9	13	30	1.75
3413234--3413343	17	6.1	18	71	10	82	46	8	14	30	1.74
3413234--3413343	36	3.1	35	77	7	114	46	8	14	30	1.74
3413232--3413369	53	2.5	55	79	6	158	46	9	13	30	1.75
3413469--3413723	45	5.7	45	78	6	216	39	10	11	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74