genome.fa.s212.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  23  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5545792--5546139	59	5.7	60	80	10	361	46	6	12	34	1.68
5547287--5547319	14	2.2	16	89	10	52	45	21	6	27	1.75
5549783--5549821	10	3.8	10	80	6	51	82	0	12	5	0.83
5551166--5551247	43	1.9	43	85	7	114	39	9	13	37	1.78
5551512--5551822	41	7.5	41	93	1	523	23	15	23	38	1.92
5551803--5551841	19	2.1	19	100	0	78	35	15	12	35	1.86
5551762--5551881	60	2.0	59	95	1	213	26	15	20	37	1.92
5551720--5551922	100	2.0	102	92	1	338	25	14	21	38	1.91
5551822--5552031	41	5.1	41	85	2	278	24	14	22	38	1.92
5551678--5551963	141	2.0	143	91	2	459	25	14	21	38	1.91
5551635--5551994	182	2.0	184	91	1	589	25	14	21	38	1.91
5552224--5552303	16	5.2	15	82	17	94	21	0	2	76	0.91
5552225--5552300	7	10.1	7	76	10	62	19	0	2	77	0.88
5552259--5552310	17	3.1	16	83	8	50	23	0	1	75	0.91
5552353--5552396	23	1.9	23	86	9	63	31	0	4	63	1.14
5552460--5552519	17	3.5	17	77	8	52	21	5	3	70	1.22
5552231--5552530	22	15.4	19	66	18	88	23	3	4	69	1.20
5552484--5552530	9	4.8	10	82	12	53	21	2	0	76	0.89
5553313--5553345	10	3.0	11	86	13	50	24	36	36	3	1.71
5553425--5553510	17	5.4	16	74	13	79	13	6	2	76	1.08
5553425--5553518	10	9.0	10	75	11	57	13	7	2	76	1.09
5553443--5553491	20	2.4	21	86	10	66	12	6	2	79	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5553527--5553953	59	7.2	60	84	7	523	45	7	12	34	1.70
5553527--5553953	117	3.6	119	87	5	580	45	7	12	34	1.70
5554685--5554710	3	8.7	3	100	0	52	30	0	0	69	0.89
5559279--5559321	11	3.8	11	81	6	50	55	4	16	23	1.59
5560140--5560170	11	2.8	11	95	0	53	19	3	0	77	0.90
5560272--5560308	10	3.6	10	89	7	56	24	0	8	67	1.17
5560268--5560308	21	2.0	21	95	0	73	26	0	7	65	1.18
5560268--5560307	11	3.7	11	93	6	73	25	0	7	67	1.16
5560353--5560420	18	3.8	18	75	24	72	44	2	8	44	1.50
5560801--5560827	13	2.1	13	100	0	54	37	7	25	29	1.83
5561394--5561436	2	21.5	2	100	0	86	48	0	51	0	1.00
5569536--5569607	5	14.0	5	76	11	65	41	1	1	55	1.17
5569536--5569602	31	2.2	31	89	5	100	41	0	1	56	1.08
5569536--5569614	26	3.0	25	77	20	81	43	1	1	54	1.16
5569555--5569626	36	2.0	36	83	5	92	45	1	1	51	1.18
5569604--5569666	22	2.6	22	87	12	81	53	0	0	46	1.00
5570199--5570235	19	1.9	19	94	0	65	70	0	2	27	1.01
5570205--5570274	18	4.0	17	74	10	61	61	0	2	35	1.11
5570749--5570781	2	16.5	2	100	0	66	51	0	0	48	1.00
5571512--5571573	33	1.9	32	86	3	88	53	1	1	43	1.20
5571956--5571999	23	1.9	23	86	9	63	50	0	0	50	1.00
5572400--5572443	11	4.0	11	84	0	61	29	0	15	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5572401--5572452	22	2.4	22	86	0	77	34	0	11	53	1.37
5572403--5572452	11	4.5	11	84	0	55	34	0	10	56	1.33
5572477--5572632	51	3.0	51	79	3	134	48	4	17	30	1.67
5572749--5572799	24	2.1	24	100	0	102	11	0	39	49	1.40
5572828--5572927	51	2.0	51	89	0	155	21	7	34	38	1.80
5573211--5573242	12	2.7	12	95	0	55	18	0	12	68	1.20
5573350--5573393	22	2.0	23	86	4	63	54	4	2	38	1.33
5574257--5574297	6	7.2	6	83	5	50	36	0	0	63	0.95
5574252--5574317	22	3.0	23	85	10	86	42	0	0	57	0.98
5574284--5574333	20	2.5	20	90	6	75	46	0	0	54	1.00
5584281--5584312	12	2.7	12	90	0	55	81	3	0	15	0.82
5584863--5584996	65	2.1	64	85	4	180	47	11	19	21	1.81
5595300--5595358	29	2.0	29	96	0	109	42	13	11	32	1.81
5597056--5597093	18	2.1	18	95	0	67	36	23	18	21	1.95
5598960--5599301	58	5.8	57	78	12	250	36	11	4	46	1.63
5598916--5599302	59	6.6	56	78	9	276	36	11	5	46	1.63
5601048--5601616	85	6.7	85	85	1	633	44	15	19	20	1.87
5601048--5601616	170	3.4	170	85	1	698	44	15	19	20	1.87
5601081--5601616	255	2.1	254	85	1	707	44	15	19	20	1.86
5601812--5601884	17	4.3	17	91	0	101	42	9	20	27	1.83
5601812--5601924	34	3.4	34	76	2	111	43	8	19	28	1.81
5601904--5602019	56	2.1	56	83	3	144	39	12	18	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5601948--5601997	17	2.9	18	79	5	59	34	12	22	32	1.90
5601932--5602046	56	2.1	56	81	6	135	38	10	18	33	1.85
5602184--5602237	21	2.6	21	81	0	63	40	18	5	35	1.74
5602198--5602242	21	2.1	21	91	0	72	42	20	6	31	1.77
5603330--5603386	25	2.3	24	84	3	69	7	14	1	77	1.06
5607333--5607430	42	2.3	42	84	3	135	37	9	5	47	1.57
5607383--5607842	59	7.8	57	80	6	447	36	10	6	46	1.63
5607386--5607842	117	3.9	116	81	4	511	36	10	6	47	1.63
5608675--5608718	20	2.2	20	92	8	72	4	13	9	72	1.24
5609245--5609316	37	2.0	36	97	2	135	33	5	26	34	1.80
5609397--5609445	25	1.9	26	83	4	64	16	10	0	73	1.09
5609628--5609655	2	14.0	2	100	0	56	50	0	0	50	1.00
5609700--5609766	21	3.2	20	74	17	57	17	7	2	71	1.22
5610569--5610654	32	2.9	28	74	14	73	41	1	2	54	1.20
5610981--5611025	22	2.2	20	84	8	54	6	4	6	82	0.95
5610994--5611035	22	1.9	22	85	0	57	11	4	4	78	1.06
5611116--5611263	59	2.5	59	83	5	174	30	4	10	54	1.53
5612526--5612569	2	22.0	2	90	0	70	54	0	0	45	0.99
5612528--5612568	14	2.9	14	100	0	82	56	0	0	43	0.99
5618742--5618810	24	2.8	24	78	8	59	50	8	7	33	1.61
5623278--5623328	24	2.1	24	96	0	93	31	7	9	50	1.64
5628156--5628221	6	10.8	6	76	20	66	30	1	1	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5629383--5629408	4	6.5	4	100	0	52	23	0	0	76	0.78
5629437--5629534	42	2.3	41	82	10	108	48	8	7	35	1.60
5630415--5630453	13	3.0	13	80	0	51	41	0	15	43	1.46
5630505--5630548	17	2.5	18	92	3	72	40	0	0	59	0.98
5633420--5633469	3	16.7	3	100	0	100	32	0	0	68	0.90
5633746--5633805	29	2.1	29	96	0	111	31	13	18	36	1.89
5634693--5634729	17	2.1	18	90	5	58	40	8	0	51	1.32
5638149--5638188	21	1.9	21	85	10	55	22	20	7	50	1.73
5645349--5645380	17	1.9	17	93	6	57	71	3	6	18	1.20
5648127--5648154	2	14.0	2	100	0	56	50	0	0	50	1.00
5648897--5648941	3	15.0	3	100	0	90	33	0	0	66	0.92
5650445--5650504	3	20.0	3	100	0	120	33	0	0	66	0.92
5659728--5659774	22	2.1	22	84	7	60	78	4	12	4	1.04
5660119--5660182	17	3.8	17	76	13	69	81	0	7	10	0.88
5660110--5660179	34	2.1	34	86	7	99	77	0	11	11	1.00
5660158--5660200	11	4.1	11	82	11	54	83	0	6	9	0.80
5660152--5660208	20	2.9	18	82	10	60	80	0	8	10	0.90
5660118--5660198	29	2.9	27	81	15	85	80	0	8	11	0.91
5661429--5661631	107	1.9	107	85	2	282	32	10	17	39	1.83
5662067--5662440	43	8.6	43	80	7	283	28	11	14	45	1.80
5662067--5662428	86	4.2	86	77	8	313	28	11	14	45	1.79
5662067--5662443	129	2.9	131	80	7	410	28	11	14	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5662490--5662519	15	2.0	15	100	0	60	86	6	6	0	0.70
5662728--5662781	20	2.8	20	72	11	58	14	5	7	72	1.26
5664846--5664886	2	20.5	2	84	0	55	48	4	2	43	1.37
5665935--5665960	10	2.6	10	100	0	52	53	0	0	46	1.00
5667097--5667192	10	9.1	11	71	19	55	76	4	1	18	1.01
5667100--5667193	9	10.3	9	75	21	72	76	4	1	18	1.00
5667097--5667193	18	5.3	17	76	11	86	76	4	1	18	1.01
5667101--5667193	8	11.4	8	72	23	61	76	4	1	18	1.01
5668254--5668288	18	1.9	18	88	0	52	20	0	5	74	1.02
5668864--5668948	40	2.2	40	85	8	120	50	7	8	34	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74