genome.fa.s212.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  43  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8793464--8793518	26	2.1	26	86	6	76	56	0	1	41	1.10
8808121--8808148	2	14.0	2	100	0	56	50	0	0	50	1.00
8816153--8816196	3	14.7	3	100	0	88	31	0	0	68	0.90
8824190--8824289	51	2.0	51	84	4	130	35	7	5	53	1.50
8827927--8827958	4	8.2	4	93	6	57	78	0	21	0	0.76
8828604--8828673	23	3.1	23	62	22	58	44	20	14	21	1.86
8828601--8828688	44	2.0	44	97	0	167	43	19	13	23	1.87
8829831--8829861	14	2.1	15	94	5	55	12	12	0	74	1.08
8830741--8830769	7	4.1	7	100	0	58	13	27	31	27	1.94
8831381--8831414	18	1.9	18	88	5	52	14	0	5	79	0.91
8832197--8832238	20	2.0	20	82	13	50	61	0	9	28	1.27
8834124--8834163	18	2.2	18	86	8	55	67	0	0	32	0.91
8836620--8836653	6	5.5	6	92	3	50	58	0	0	41	0.98
8837110--8837142	2	16.5	2	100	0	66	51	0	0	48	1.00
8838073--8838123	15	3.5	14	79	10	57	21	1	3	72	1.11
8840046--8840125	31	2.5	31	80	11	83	32	2	6	58	1.36
8847124--8847247	64	2.0	62	84	7	153	32	7	7	53	1.56
8847495--8847538	20	2.2	20	87	0	61	75	4	6	13	1.17
8847501--8847539	20	2.0	20	94	0	69	69	5	7	17	1.32
8848432--8848523	3	30.7	3	95	0	166	66	2	0	31	1.04
8849577--8849654	34	2.3	33	82	6	93	46	11	10	32	1.74
8849674--8849753	32	2.5	33	81	2	99	41	12	18	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8859629--8859685	28	2.0	28	100	0	114	31	14	14	40	1.85
8861644--8861679	17	2.0	19	89	10	58	77	0	5	16	0.94
8862672--8862711	3	13.3	3	100	0	80	65	0	0	35	0.93
8863451--8863483	2	16.5	2	93	0	57	48	0	3	48	1.17
8866839--8866880	14	2.9	14	86	13	59	40	0	4	54	1.21
8866964--8867005	13	3.4	12	84	12	50	23	0	7	69	1.13
8874148--8874176	15	2.0	15	93	6	51	34	17	0	48	1.47
8874189--8874230	18	2.4	17	92	4	66	7	23	0	69	1.13
8877746--8877847	16	6.2	17	76	14	88	15	0	32	50	1.51
8877746--8877847	17	6.2	16	76	12	91	15	0	32	50	1.51
8877746--8877847	33	3.1	33	84	8	136	15	0	32	50	1.51
8878221--8878271	8	6.2	8	79	4	57	76	3	0	19	0.94
8879239--8879272	15	2.3	15	89	0	50	0	0	17	82	0.67
8879239--8879286	16	3.1	15	82	8	60	0	0	18	81	0.70
8879240--8879282	10	4.3	10	85	8	52	0	0	18	81	0.69
8879429--8879611	47	3.9	47	86	3	251	37	26	12	24	1.90
8879427--8879748	81	3.5	95	79	13	345	36	27	11	25	1.90
8879617--8879745	47	2.7	47	89	1	195	37	27	10	24	1.89
8879484--8879740	128	2.0	129	88	3	383	36	27	10	25	1.89
8883767--8883838	18	3.9	18	73	8	65	51	9	2	36	1.49
8883903--8883966	18	3.6	18	89	4	94	48	7	0	43	1.32
8883978--8884049	30	2.4	29	77	11	74	50	2	4	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8884311--8884344	7	4.7	7	85	7	50	73	5	0	20	1.04
8884373--8884420	20	2.5	19	86	6	62	56	2	2	39	1.23
8884836--8884878	21	2.0	21	91	8	70	25	0	2	72	0.97
8884804--8884859	28	1.9	30	92	7	98	28	0	5	66	1.14
8884802--8884849	10	5.0	9	78	14	51	27	0	4	68	1.07
8885330--8885384	10	5.6	10	83	10	69	61	9	0	29	1.26
8885456--8885518	28	2.2	28	83	5	83	66	9	0	23	1.21
8885460--8885497	19	2.0	20	84	5	51	65	10	0	23	1.23
8885653--8885711	9	6.0	10	75	16	61	35	1	1	61	1.16
8885634--8885784	8	17.6	8	69	25	62	30	1	3	63	1.24
8885650--8885784	9	14.4	9	69	17	53	30	1	4	63	1.23
8885646--8885776	20	7.0	18	72	15	97	32	1	3	62	1.22
8885892--8885929	17	2.3	17	83	16	53	21	7	0	71	1.11
8885959--8886021	32	1.9	32	83	3	81	42	1	4	50	1.32
8885960--8886035	24	3.0	26	75	13	77	39	3	5	51	1.43
8885978--8886021	8	5.5	8	81	10	54	45	2	2	50	1.27
8888024--8888074	20	2.5	19	77	22	59	50	0	3	45	1.20
8888459--8888520	21	3.2	19	77	8	63	53	1	4	40	1.32
8888455--8888509	21	2.7	21	83	5	69	60	0	3	36	1.15
8888477--8888509	11	3.1	11	82	8	50	60	0	0	39	0.97
8888455--8888537	38	2.2	38	82	10	98	59	3	3	33	1.32
8888698--8888734	10	3.8	10	85	7	58	51	5	0	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8888698--8888736	19	2.0	20	95	5	71	48	5	0	46	1.24
8888763--8888818	13	4.4	12	80	8	58	21	0	1	76	0.87
8888783--8888840	27	2.2	26	82	14	73	22	0	3	74	0.97
8888824--8888917	10	10.0	9	70	18	50	28	2	2	67	1.14
8888873--8888910	10	3.6	10	86	13	58	26	2	2	68	1.16
8888869--8888936	30	2.3	30	81	0	82	35	2	1	60	1.21
8888972--8889025	17	3.2	16	84	5	54	33	0	5	61	1.19
8888986--8889027	17	2.5	17	92	3	68	33	0	7	59	1.25
8890037--8890068	16	1.9	17	93	6	57	34	3	0	62	1.11
8898143--8898175	2	16.5	2	93	0	57	51	3	0	45	1.16
8906314--8906357	10	4.3	10	91	2	70	86	0	13	0	0.57
8906308--8906357	16	3.2	15	83	10	64	86	0	14	0	0.58
8906308--8906357	20	2.6	19	90	9	75	86	0	14	0	0.58
8906373--8906431	14	4.1	14	85	10	84	81	0	16	1	0.78
8907513--8907558	15	3.0	15	84	6	65	47	23	2	26	1.63
8907486--8907549	16	4.1	16	75	15	62	45	28	0	26	1.54
8907567--8907607	15	2.6	16	78	14	50	41	26	7	24	1.81
8909281--8909333	27	2.0	27	92	7	90	26	13	26	33	1.93
8913470--8913508	20	1.9	21	89	5	62	43	2	15	38	1.60
8914694--8914750	30	1.9	29	85	3	78	75	7	12	5	1.17
8916514--8916575	23	2.8	23	76	13	60	80	3	11	4	0.98
8916527--8916575	9	5.1	9	76	13	53	83	2	8	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8916527--8916575	20	2.5	19	78	15	55	83	2	8	6	0.87
8916954--8917041	23	3.9	23	72	8	72	36	22	13	27	1.92
8917622--8917664	22	2.0	22	81	9	52	32	11	18	37	1.87
8919117--8919159	19	2.2	20	87	4	61	74	2	23	0	0.93
8919120--8919173	25	2.2	25	81	12	69	72	1	25	0	0.95
8919741--8919784	13	3.3	13	84	12	54	63	0	2	34	1.07
8920208--8920243	15	2.3	16	85	9	56	52	22	0	25	1.47
8920262--8920347	14	5.9	14	72	16	59	50	26	3	19	1.64
8920287--8920345	17	3.7	16	73	13	50	52	23	3	20	1.61
8920273--8920375	31	3.4	30	83	10	113	52	24	3	19	1.63
8920216--8920354	14	9.3	15	68	17	51	49	27	2	20	1.63
8920318--8920392	23	3.3	23	76	10	73	50	26	4	18	1.64
8920417--8920491	23	3.2	23	81	7	71	50	30	0	18	1.47
8920445--8920491	8	5.8	8	85	5	67	51	34	0	14	1.43
8920447--8920689	16	15.8	16	68	14	84	47	28	2	21	1.62
8920612--8920689	15	5.3	15	80	11	81	53	24	1	20	1.53
8920612--8920689	8	10.6	7	76	8	50	53	24	1	20	1.53
8920620--8920689	8	9.4	8	82	14	80	54	25	0	20	1.45
8920623--8920713	28	3.1	29	78	12	78	50	26	2	20	1.60
8921873--8922778	232	3.9	236	75	10	657	50	5	11	32	1.62
8923376--8923902	232	2.3	226	80	10	571	51	5	10	32	1.60
8923376--8924305	238	4.0	228	73	12	613	49	6	12	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8924032--8924064	17	2.0	17	88	5	50	48	6	6	39	1.53
8924105--8924151	23	2.0	24	87	4	69	63	0	2	34	1.06
8934688--8934716	8	3.6	8	100	0	58	34	0	0	65	0.93
8935756--8935785	15	2.0	15	93	0	51	63	0	0	36	0.95
8936515--8936588	36	2.1	36	97	0	139	25	8	20	45	1.78
8937017--8937043	14	1.9	14	100	0	54	51	0	18	29	1.46
8941043--8941173	68	1.9	67	83	13	171	52	3	10	33	1.51
8941856--8941911	25	2.2	25	83	0	76	28	14	7	50	1.69
8944010--8947097	627	4.9	629	78	5	2802	44	11	22	21	1.84
8944010--8947093	626	4.9	626	78	5	2753	44	11	22	21	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74