genome.fa.s212.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  63  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12492316--12492393	26	3.0	26	90	1	120	52	20	5	21	1.66
12492632--12492664	14	2.4	14	90	10	50	78	0	3	18	0.87
12498279--12503195	264	18.6	266	83	6	5482	36	11	10	41	1.77
12498279--12503195	525	9.3	522	82	6	5790	36	11	10	41	1.77
12498279--12503195	791	6.2	787	82	7	5315	36	11	10	41	1.77
12504007--12504051	21	2.1	22	91	4	74	46	4	22	26	1.70
12504492--12504519	14	2.0	14	100	0	56	28	7	14	50	1.69
12505727--12505792	27	2.5	25	77	15	71	42	7	1	48	1.40
12505721--12505780	29	2.1	27	84	6	75	41	8	1	48	1.43
12516996--12517036	12	3.4	12	86	0	55	41	2	4	51	1.36
12517002--12517040	18	2.2	18	85	0	51	38	2	7	51	1.44
12518843--12518886	8	5.6	8	94	2	72	18	0	0	81	0.68
12519145--12519200	13	3.8	14	76	19	60	37	1	1	58	1.19
12519118--12519196	32	2.5	30	80	11	79	41	2	1	54	1.22
12519149--12519188	17	2.3	18	86	4	55	35	2	2	60	1.24
12519784--12519852	29	2.3	29	83	11	79	49	4	0	46	1.21
12520475--12520518	17	2.5	17	85	10	54	45	2	0	52	1.13
12521303--12521386	34	2.5	34	80	3	89	42	15	8	33	1.77
12525093--12525249	76	2.1	76	91	2	253	33	14	24	28	1.94
12525939--12525981	9	4.7	9	85	5	59	81	2	2	13	0.89
12525939--12525980	19	2.2	19	87	8	59	83	2	2	11	0.84
12525939--12525974	19	1.9	19	94	5	65	83	0	2	13	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12526226--12526297	35	2.0	36	83	8	92	65	2	1	30	1.15
12527187--12527225	10	4.0	10	83	6	53	46	0	0	53	1.00
12527187--12527224	19	2.0	19	90	10	60	44	0	0	55	0.99
12536916--12536943	2	14.0	2	100	0	56	50	0	0	50	1.00
12543550--12543586	18	2.0	20	89	10	60	48	21	5	24	1.71
12543878--12543913	15	2.2	18	80	19	51	25	11	5	58	1.54
12547307--12547349	15	2.9	15	82	0	59	79	0	16	4	0.90
12554192--12554221	15	2.0	15	93	0	51	53	10	13	23	1.69
12563667--12563718	22	2.4	22	96	0	95	34	7	11	46	1.69
12566676--12566712	19	1.9	19	88	0	56	18	13	0	67	1.23
12567387--12567429	21	2.1	20	86	4	59	11	13	2	72	1.22
12576675--12576705	16	1.9	16	93	0	53	35	12	3	48	1.58
12580960--12581342	202	1.9	202	89	2	590	38	7	7	46	1.61
12587845--12587935	47	1.9	47	86	0	128	30	6	14	48	1.69
12596701--12596940	124	1.9	124	100	0	480	41	9	16	32	1.81
12600758--12600813	19	3.0	19	75	12	62	30	1	32	35	1.68
12600884--12600909	13	2.0	13	100	0	52	7	0	38	53	1.30
12600995--12601119	37	3.4	37	78	13	123	13	0	42	43	1.50
12601107--12601178	20	3.6	20	72	7	65	8	4	44	43	1.53
12601088--12601185	40	2.5	40	80	8	119	10	4	43	41	1.57
12601209--12601282	20	3.8	20	80	3	96	17	2	39	40	1.64
12601103--12601226	64	1.9	67	83	5	164	11	4	41	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12602145--12602464	48	6.6	49	79	8	260	39	13	12	35	1.82
12602201--12602464	97	2.7	97	78	7	214	37	14	11	36	1.82
12603013--12603083	7	9.7	7	73	14	54	26	21	1	50	1.57
12603014--12603072	4	16.8	4	73	25	53	25	22	0	52	1.47
12603021--12603070	17	2.9	17	88	5	75	24	20	0	56	1.43
12603014--12603069	24	2.3	24	87	6	78	25	21	0	53	1.46
12603025--12603085	28	2.2	28	77	8	72	26	21	1	50	1.58
12603114--12603148	9	3.9	9	100	0	70	11	11	0	77	1.00
12606627--12606771	75	1.9	75	87	0	209	47	12	6	33	1.68
12607257--12607330	34	2.1	34	82	5	85	41	18	12	27	1.86
12607023--12607477	236	1.9	236	82	3	576	40	16	11	31	1.85
12607564--12607646	33	2.5	33	84	0	103	32	15	16	34	1.91
12618237--12618279	10	4.5	10	88	8	63	27	0	0	72	0.85
12619665--12619697	16	2.1	16	88	5	50	51	21	3	24	1.62
12627438--12627480	20	2.1	20	83	12	52	60	2	6	30	1.35
12627558--12627583	2	13.0	2	100	0	52	50	0	0	50	1.00
12628538--12628578	16	2.5	17	80	11	50	39	0	19	41	1.52
12629391--12629439	20	2.5	20	84	15	68	51	2	0	46	1.12
12629673--12629720	22	2.3	22	85	7	64	43	6	2	47	1.40
12630016--12630139	32	3.9	31	76	10	108	37	4	6	51	1.46
12630045--12630139	31	3.0	31	76	14	97	36	4	5	53	1.43
12630016--12630139	62	2.0	64	84	6	164	37	4	6	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12630045--12630137	30	3.0	28	77	14	87	37	4	5	52	1.44
12630620--12630685	33	2.0	33	96	0	123	46	7	12	33	1.69
12632075--12632115	19	2.2	19	86	0	55	12	7	0	80	0.90
12632086--12632123	12	3.1	13	81	11	53	15	5	0	78	0.91
12632076--12632123	24	2.0	24	87	4	69	12	8	0	79	0.94
12632077--12632122	11	3.9	12	81	10	51	13	8	0	78	0.97
12632216--12632276	30	2.2	29	82	11	74	36	4	4	54	1.44
12633717--12633759	21	2.0	21	90	0	68	16	6	16	60	1.56
12633768--12633792	12	2.1	12	100	0	50	32	8	8	52	1.60
12638723--12638860	48	2.8	49	78	6	125	37	14	7	39	1.75
12638714--12638859	35	4.3	35	74	8	115	36	14	8	40	1.76
12638785--12638947	53	3.1	52	75	7	150	38	13	7	41	1.72
12638707--12638955	17	14.5	17	76	6	146	38	13	7	39	1.73
12638925--12639019	31	2.9	33	76	4	86	27	17	12	42	1.86
12639109--12639159	26	2.0	26	88	0	75	31	1	19	47	1.61
12639430--12639468	19	2.1	19	90	0	60	41	10	5	43	1.61
12639232--12639687	203	2.2	203	81	7	498	35	7	9	46	1.65
12641177--12641251	34	2.2	35	76	7	82	58	4	2	34	1.31
12641542--12641627	31	2.8	32	74	12	88	36	3	6	53	1.45
12642561--12642614	22	2.5	22	87	0	81	20	1	7	70	1.21
12642567--12642602	16	2.2	17	90	5	56	16	2	8	72	1.21
12643029--12643065	13	2.7	13	91	8	56	16	0	21	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12643536--12643611	7	10.9	7	70	20	52	18	3	0	77	0.92
12643536--12643611	13	5.5	13	73	23	66	18	3	0	77	0.92
12643540--12643622	6	13.5	6	72	16	55	19	3	1	75	1.01
12643536--12643611	22	3.7	20	73	15	64	18	3	0	77	0.92
12643539--12643612	19	3.9	19	68	26	59	18	4	0	77	0.93
12643751--12643789	19	2.1	19	90	0	60	25	5	15	53	1.62
12645453--12646488	345	3.0	345	97	0	1955	44	13	19	23	1.85
12648806--12648890	42	2.0	42	90	0	134	41	11	17	29	1.85
12650222--12650309	40	2.2	41	87	2	124	28	14	17	39	1.89
12650616--12650794	45	4.0	44	81	6	198	37	7	12	42	1.71
12650621--12650796	22	7.8	22	68	11	106	38	7	11	42	1.71
12651072--12651252	18	10.3	17	73	6	94	44	11	7	37	1.68
12651064--12651136	35	2.1	36	84	2	94	43	9	6	39	1.64
12651047--12651252	53	3.9	53	74	12	167	42	11	8	38	1.71
12651079--12651176	35	2.8	35	81	6	92	42	10	8	38	1.68
12651124--12651244	35	3.4	36	76	6	115	42	10	9	37	1.71
12651693--12651750	16	3.6	16	79	4	71	20	3	8	67	1.33
12651773--12651803	16	1.9	16	93	0	53	80	3	16	0	0.83
12651916--12651957	14	3.1	13	83	10	57	57	23	4	14	1.56
12652386--12652423	20	1.9	20	94	0	67	26	23	26	23	2.00
12652864--12652916	19	2.9	19	89	8	76	33	3	11	50	1.56
12652899--12652963	33	1.9	35	90	6	107	27	1	9	61	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12654567--12654597	4	7.8	4	100	0	62	22	0	0	77	0.77
12654643--12654681	2	19.5	2	94	0	69	46	0	2	51	1.14
12654683--12654765	11	7.1	11	75	17	78	19	8	0	72	1.10
12654679--12654744	23	2.9	22	85	12	89	18	9	0	72	1.10
12654683--12654765	6	15.2	5	79	12	60	19	8	0	72	1.10
12656293--12656329	14	2.5	15	86	13	58	56	0	8	35	1.29
12664025--12664058	18	2.0	18	88	11	54	55	0	0	44	0.99
12664527--12664561	3	11.7	3	87	0	52	34	28	37	0	1.58
12664798--12664852	3	18.3	3	80	0	65	29	0	40	30	1.57
12674902--12674997	31	3.2	31	72	21	96	56	6	1	36	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74