genome.fa.s212.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  57  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11375044--11375211	56	2.9	56	82	15	216	35	8	2	52	1.47
11375379--11375472	46	2.0	46	100	0	188	18	19	37	25	1.94
11376370--11376595	125	1.8	124	89	0	353	39	13	17	30	1.87
11381433--11381493	20	3.0	20	85	2	86	55	11	6	26	1.59
11381492--11381556	19	3.4	19	77	8	78	55	12	7	24	1.63
11381547--11381687	24	5.8	24	73	11	124	48	9	7	34	1.64
11381587--11381651	19	3.1	20	86	10	78	44	10	6	38	1.64
11381561--11381699	51	2.8	50	77	7	140	50	10	6	33	1.62
11381832--11381915	8	10.0	8	70	8	60	78	2	4	14	1.01
11381826--11381916	19	4.8	18	73	16	69	76	2	4	16	1.04
11381826--11381915	13	6.5	13	72	20	51	77	2	4	15	1.02
11381880--11381916	18	2.0	19	94	5	67	81	0	2	16	0.81
11384311--11384351	21	1.9	21	85	5	55	41	12	26	19	1.87
11388346--11388857	255	2.0	254	87	3	744	18	28	11	41	1.85
11396286--11396315	15	2.0	15	100	0	60	53	0	20	26	1.46
11396412--11396440	7	4.3	7	95	4	51	24	0	0	75	0.80
11397756--11397789	17	1.9	18	88	5	52	35	5	5	52	1.50
11400064--11400116	19	2.8	19	94	0	88	49	0	3	47	1.19
11409091--11409125	16	2.1	17	94	5	63	17	0	17	65	1.27
11409132--11409309	20	9.2	20	75	9	147	34	5	10	49	1.60
11409117--11409309	39	5.1	36	81	8	163	34	5	10	50	1.59
11409145--11409212	16	3.8	16	71	23	55	33	5	10	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11409155--11409309	39	4.0	39	86	5	215	33	5	10	50	1.60
11409132--11409310	78	2.3	77	85	5	247	35	5	10	49	1.60
11409592--11409871	139	2.0	139	92	0	470	38	13	15	32	1.86
11410330--11410686	180	2.0	181	95	0	644	34	13	13	39	1.83
11416523--11416568	21	2.2	21	96	0	83	26	26	13	34	1.92
11422839--11422904	12	5.5	12	78	3	62	18	27	1	53	1.54
11422831--11422895	24	2.7	24	82	0	76	20	24	1	53	1.54
11422861--11422913	21	2.5	21	77	17	56	11	30	1	56	1.45
11426474--11426569	49	2.0	49	91	0	156	26	21	20	31	1.98
11430215--11430247	2	17.0	2	87	6	50	51	0	0	48	1.00
11436206--11436247	17	2.3	18	84	8	50	78	0	14	7	0.95
11436169--11436239	30	2.4	30	79	6	83	76	0	15	8	1.02
11437873--11438068	44	4.5	42	78	9	180	23	16	21	38	1.92
11437873--11438010	42	3.2	41	86	8	186	23	15	23	36	1.94
11437995--11438079	43	2.0	44	83	2	109	24	16	18	40	1.91
11438098--11438131	11	3.0	11	83	8	50	91	5	0	2	0.51
11438098--11438131	12	2.9	12	86	4	52	91	5	0	2	0.51
11438287--11438354	25	2.8	25	82	6	70	22	5	4	67	1.30
11438388--11438450	5	11.6	5	79	12	54	15	6	1	76	1.07
11438474--11438554	22	3.8	21	80	18	78	23	6	2	67	1.25
11438508--11438566	19	3.0	19	72	18	57	20	6	1	71	1.18
11439029--11439067	19	2.0	20	90	5	62	43	17	12	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11439414--11439443	4	7.5	4	92	0	51	20	0	3	76	0.92
11439561--11439836	59	4.7	58	82	9	308	43	7	12	36	1.71
11439561--11439836	60	4.7	58	83	10	303	43	7	12	36	1.71
11439685--11439775	27	3.2	27	68	14	74	42	5	14	37	1.69
11444934--11444999	12	5.5	12	78	3	62	18	27	1	53	1.54
11444926--11444990	24	2.7	24	82	0	76	20	24	1	53	1.54
11444956--11445008	21	2.5	21	77	17	56	11	30	1	56	1.45
11447022--11447055	16	2.1	16	88	5	50	38	5	17	38	1.74
11448575--11448670	49	2.0	49	89	0	147	26	22	20	30	1.99
11452320--11452359	2	21.0	2	85	10	57	50	0	0	50	1.00
11452320--11452359	17	2.4	17	95	0	71	50	0	0	50	1.00
11456972--11457050	23	3.7	20	73	18	68	48	11	6	34	1.65
11456980--11457043	23	2.8	23	82	0	74	50	10	4	34	1.59
11456972--11457054	43	2.0	42	81	11	98	49	12	6	32	1.64
11457174--11457243	23	3.3	21	73	19	65	80	4	1	14	0.94
11457188--11457243	18	3.2	17	80	16	69	80	3	0	16	0.85
11457188--11457242	6	9.5	6	84	9	62	80	3	0	16	0.86
11458293--11458331	17	2.2	18	86	13	55	58	7	7	25	1.52
11459019--11459099	17	4.8	17	72	11	67	41	8	16	33	1.78
11459034--11459097	33	1.9	33	87	3	92	40	9	17	32	1.81
11459092--11459173	17	4.9	17	67	14	53	42	12	8	36	1.73
11459763--11459838	32	2.3	32	88	6	109	35	13	15	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11459823--11459901	32	2.5	31	84	10	97	34	13	15	36	1.87
11459989--11460061	33	2.2	32	83	11	87	32	13	16	36	1.88
11460906--11460943	11	3.4	11	89	7	58	7	5	2	84	0.86
11460906--11460952	23	2.0	23	83	8	58	10	6	4	78	1.06
11467767--11467810	12	3.7	12	84	6	54	15	13	11	59	1.62
11467799--11467847	21	2.3	21	79	6	55	20	14	8	57	1.63
11468098--11468141	18	2.4	18	85	7	54	25	29	11	34	1.91
11475499--11475542	21	2.1	21	83	8	54	52	0	0	47	1.00
11476197--11476275	20	4.1	19	69	21	56	50	6	0	43	1.27
11476316--11476566	29	8.8	29	69	19	152	49	1	2	45	1.28
11476395--11476425	16	1.9	16	93	0	53	45	0	0	54	0.99
11476395--11476442	9	5.6	9	75	25	50	45	0	0	54	0.99
11476350--11476491	73	2.0	69	69	20	55	48	2	2	45	1.31
11476395--11476474	18	4.6	18	80	6	67	48	3	1	46	1.28
11476528--11476562	17	2.0	18	88	5	54	57	0	0	42	0.99
11476651--11476691	18	2.4	16	84	15	55	56	2	2	39	1.26
11476631--11476705	39	1.9	39	83	5	98	53	2	4	40	1.34
11476822--11476863	11	3.8	11	87	0	66	64	0	7	28	1.20
11476821--11476868	22	2.2	22	92	0	78	62	0	8	29	1.24
11476822--11476885	32	2.0	33	84	3	85	57	3	6	32	1.39
11476871--11476939	21	3.4	20	70	4	59	47	4	1	46	1.31
11477881--11477905	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11482113--11482190	37	2.1	37	97	0	147	39	11	11	37	1.78
11485192--11485216	13	1.9	13	100	0	50	72	0	28	0	0.86
11485492--11485530	18	2.2	18	90	0	60	20	2	2	74	1.06
11485556--11485593	20	1.9	19	89	5	58	78	0	7	13	0.94
11490290--11490375	24	3.5	24	74	14	86	80	1	13	4	0.93
11490293--11490376	15	5.5	15	71	17	50	80	1	13	4	0.92
11490282--11490381	35	2.8	35	77	16	109	79	1	15	5	0.96
11491164--11491199	17	2.1	17	89	0	54	52	5	16	25	1.65
11491771--11491825	21	2.5	22	79	2	67	38	7	16	38	1.76
11492053--11492288	42	5.6	42	84	5	271	23	11	19	44	1.84
11492053--11492238	41	4.5	42	89	2	270	23	10	19	45	1.82
11492053--11492288	83	2.8	83	86	3	303	23	11	19	44	1.84
11493412--11493447	18	2.0	18	89	10	56	83	0	2	13	0.76
11499303--11499341	17	2.3	17	86	0	51	64	0	30	5	1.15
11501955--11501995	18	2.3	18	87	4	57	14	4	34	46	1.66
11502980--11503019	15	2.6	15	84	4	53	47	10	20	22	1.79
11504736--11504785	25	2.0	25	88	7	75	34	8	12	46	1.70
11505157--11505339	98	1.8	103	82	5	241	51	4	4	38	1.45
11510653--11510702	21	2.5	20	84	12	68	50	0	0	50	1.00
11510659--11510701	22	2.0	20	91	8	68	46	0	0	53	1.00
11513046--11513082	18	2.1	18	100	0	74	35	21	16	27	1.94
11516101--11516164	20	3.2	20	86	8	85	46	3	1	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11516101--11516164	11	6.3	9	74	22	56	46	3	1	48	1.27
11516693--11516740	18	2.7	18	75	9	53	35	0	4	60	1.16
11517943--11517968	5	5.2	5	100	0	52	19	0	0	80	0.71
11519482--11519516	5	7.2	5	87	6	54	82	0	17	0	0.66
11520320--11521151	64	13.1	63	74	11	502	37	19	12	30	1.89
11520320--11520786	188	2.5	191	79	5	473	38	20	11	29	1.88
11523298--11523335	19	2.0	19	89	0	58	7	5	5	81	0.98
11526591--11526625	17	2.1	17	94	0	61	25	11	11	51	1.71
11531838--11532765	484	1.9	482	80	5	1086	38	9	17	34	1.82
11534920--11534948	15	1.9	15	100	0	58	68	0	0	31	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74