genome.fa.s212.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  69  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13591374--13591426	24	2.3	23	83	6	70	15	7	35	41	1.75
13591382--13591458	24	3.2	24	87	5	102	14	5	38	41	1.68
13592612--13592687	25	3.1	24	74	10	66	61	6	1	30	1.29
13598141--13598323	64	2.9	63	78	9	176	32	13	12	40	1.82
13598667--13598842	65	2.7	63	77	6	163	35	14	13	35	1.86
13602634--13602675	7	5.9	7	94	5	75	73	11	0	14	1.09
13602633--13602675	15	2.9	15	96	3	79	74	11	0	13	1.07
13604655--13604824	90	1.9	87	81	3	205	40	8	9	42	1.67
13604643--13604819	31	5.9	31	70	14	104	41	9	9	40	1.69
13605598--13605666	20	3.6	18	75	17	59	26	1	1	71	1.03
13609324--13609348	2	12.5	2	100	0	50	48	0	0	52	1.00
13609772--13609808	2	18.5	2	100	0	74	51	0	0	48	1.00
13610763--13610802	2	20.0	2	89	0	62	45	0	2	52	1.14
13612210--13612244	2	17.5	2	100	0	70	48	0	0	51	1.00
13614504--13614539	2	18.0	2	100	0	72	50	0	0	50	1.00
13614727--13614767	22	1.9	21	90	5	64	60	0	2	36	1.10
13614729--13614767	10	3.5	11	86	10	53	64	0	2	33	1.08
13616285--13616325	13	3.0	14	83	13	50	75	0	9	14	1.04
13616569--13616907	169	2.0	169	95	1	617	45	10	6	37	1.64
13618748--13618804	21	2.7	21	88	0	87	15	1	31	50	1.54
13618808--13618857	22	2.2	22	85	3	64	20	0	34	46	1.51
13618758--13618924	50	3.3	51	80	5	144	19	2	31	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13622092--13622184	47	2.0	47	82	4	116	41	11	12	33	1.80
13622144--13622391	60	4.2	58	77	9	230	43	12	12	31	1.81
13622330--13622570	125	1.9	127	86	3	344	43	13	14	29	1.83
13622503--13622641	72	1.9	71	88	1	206	47	12	12	27	1.77
13622648--13622696	25	2.0	25	95	0	89	42	16	12	28	1.84
13622766--13622939	60	2.9	60	77	16	184	43	11	12	32	1.78
13622856--13623028	87	2.0	87	82	8	212	44	16	10	28	1.81
13622921--13622974	25	2.2	25	86	0	72	55	18	5	20	1.62
13622802--13623086	147	2.0	144	80	8	319	44	14	11	29	1.80
13622588--13623095	268	1.9	266	81	7	611	44	13	11	30	1.80
13623006--13623117	60	1.9	59	85	5	154	46	16	11	25	1.81
13623518--13623553	18	1.9	19	88	5	56	22	22	11	44	1.84
13624694--13624718	9	2.8	9	100	0	50	24	24	32	20	1.98
13626061--13626097	18	2.0	19	94	5	67	54	0	0	45	1.00
13626467--13626615	59	2.5	59	79	6	149	45	10	14	29	1.78
13636014--13636046	16	2.0	17	94	5	59	48	0	0	51	1.00
13641296--13641382	43	2.0	44	93	2	149	51	24	3	20	1.62
13642890--13642945	22	2.5	22	100	0	112	39	0	10	50	1.37
13642967--13643010	22	2.0	22	86	8	63	22	0	31	45	1.53
13642984--13643273	30	9.6	29	72	14	112	22	0	31	46	1.57
13642986--13643231	30	8.1	30	70	12	126	23	0	29	46	1.58
13643006--13643139	61	2.2	60	84	5	171	23	0	28	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13643069--13643118	14	3.4	14	76	10	55	20	0	28	52	1.47
13643112--13643148	17	2.2	17	90	0	56	27	0	27	45	1.54
13643144--13643303	16	10.8	15	70	16	57	19	0	34	45	1.55
13643220--13643365	7	20.0	7	67	13	71	18	0	36	44	1.55
13643146--13643273	59	2.2	59	87	2	177	18	0	33	46	1.55
13643222--13643319	43	2.3	43	85	7	137	18	0	33	47	1.49
13643264--13643360	30	3.2	30	86	5	151	19	0	36	44	1.51
13643679--13643709	3	10.3	3	100	0	62	32	0	0	67	0.91
13643758--13643817	12	4.9	12	77	2	57	30	6	5	58	1.45
13648750--13648802	23	2.3	23	78	15	56	49	7	7	35	1.60
13651671--13651841	64	2.7	65	76	6	154	35	16	12	35	1.86
13651694--13651841	65	2.3	64	82	3	183	35	18	11	34	1.87
13652800--13652966	84	2.0	84	82	4	203	38	14	14	31	1.88
13653887--13654006	59	2.0	59	95	0	213	35	19	12	32	1.89
13655709--13655758	7	6.9	7	82	8	64	74	10	4	12	1.21
13655709--13655768	30	1.9	32	93	6	106	75	8	6	10	1.20
13657686--13657769	31	2.7	30	77	1	87	35	9	17	36	1.83
13657780--13657892	28	3.9	28	69	15	77	40	8	7	43	1.63
13657711--13657859	31	4.9	31	71	11	119	40	11	11	36	1.77
13658675--13658723	17	2.8	18	74	20	50	26	2	0	71	0.97
13658659--13658723	28	2.4	28	87	7	91	24	3	0	72	0.99
13661817--13661850	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13662964--13662994	2	15.5	2	100	0	62	51	0	0	48	1.00
13663959--13663995	2	18.5	2	100	0	74	51	0	48	0	1.00
13664924--13664962	18	2.2	19	86	9	55	33	2	0	64	1.08
13666605--13666656	27	2.0	26	84	3	68	55	1	1	40	1.22
13666764--13666791	2	14.0	2	100	0	56	50	0	0	50	1.00
13667440--13667465	8	3.2	8	100	0	52	69	0	0	30	0.89
13669925--13669954	13	2.4	13	94	5	53	3	6	0	90	0.56
13672728--13672845	6	18.8	6	73	17	57	79	2	12	5	0.99
13672797--13672852	1	56.0	1	81	0	67	91	1	5	1	0.56
13672765--13672852	25	3.6	24	80	7	88	85	2	9	3	0.80
13672791--13672852	25	2.4	27	86	8	92	88	1	6	3	0.66
13672797--13672852	20	2.7	20	88	8	76	91	1	5	1	0.56
13673765--13673853	34	2.6	33	82	7	97	25	21	16	35	1.94
13673822--13673990	85	2.0	85	81	2	196	25	17	15	42	1.88
13673916--13674263	69	5.1	68	84	3	387	27	19	12	40	1.87
13674022--13674127	35	3.1	35	67	8	99	28	22	12	36	1.90
13673916--13674263	138	2.5	138	86	1	459	27	19	12	40	1.87
13673916--13674305	138	2.8	138	84	2	349	29	18	11	40	1.87
13674198--13674423	86	2.6	86	80	0	229	33	19	11	36	1.87
13675264--13675316	15	3.5	15	72	23	56	64	7	9	18	1.47
13675263--13675317	16	3.5	16	72	22	62	65	7	9	18	1.44
13675264--13675331	31	2.2	30	92	2	109	63	7	8	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13675778--13675820	5	7.8	5	85	14	50	18	2	0	79	0.85
13676978--13677106	32	3.8	31	70	20	87	50	3	0	45	1.22
13677050--13677111	28	2.2	28	83	8	74	53	1	0	45	1.10
13681467--13681512	2	23.0	2	100	0	92	50	0	0	50	1.00
13681703--13681730	2	14.0	2	100	0	56	50	0	0	50	1.00
13681955--13681984	2	15.0	2	92	0	51	46	0	0	53	1.00
13684647--13684681	2	17.5	2	87	0	52	48	2	2	45	1.32
13684666--13685029	193	1.9	192	79	7	416	45	4	7	42	1.51
13685595--13685627	17	1.9	17	93	0	57	39	6	9	45	1.61
13686888--13687014	32	3.8	32	70	14	94	50	2	1	45	1.24
13686980--13687017	20	1.9	20	84	10	51	55	0	0	44	0.99
13689625--13689676	27	2.0	26	82	17	63	73	3	7	15	1.21
13689820--13689893	39	2.0	36	84	7	94	52	2	0	44	1.15
13689770--13689908	32	4.4	32	73	9	124	47	2	1	48	1.22
13690018--13690062	15	3.0	15	80	0	54	35	8	0	55	1.31
13692815--13692839	2	12.5	2	100	0	50	52	0	0	48	1.00
13694356--13694410	23	2.3	23	81	3	56	12	12	7	67	1.42
13694561--13694728	75	2.1	79	77	17	179	42	1	2	52	1.24
13702379--13702417	2	19.5	2	100	0	78	51	0	0	48	1.00
13703048--13703072	3	8.3	3	100	0	50	68	0	0	32	0.90
13703943--13703976	18	1.9	18	88	5	52	32	2	0	64	1.08
13705607--13705658	27	2.0	26	84	3	68	55	1	1	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13705766--13705791	2	13.0	2	100	0	52	50	0	0	50	1.00
13706439--13706464	8	3.2	8	100	0	52	69	0	0	30	0.89
13711738--13711808	28	2.5	28	86	2	97	90	5	4	0	0.56
13711759--13711806	1	48.0	1	95	0	87	97	2	0	0	0.15
13712759--13712826	34	2.0	34	85	0	91	35	20	11	32	1.89
13712875--13712983	57	1.9	57	85	5	150	22	18	12	45	1.83
13712939--13713223	69	4.2	68	86	4	367	28	21	11	38	1.87
13712939--13713225	138	2.1	136	88	1	412	28	20	11	39	1.87
13712980--13713265	136	2.1	138	82	3	337	30	20	10	38	1.87
13713175--13713360	86	2.2	86	80	0	192	31	19	9	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74