genome.fa.s212.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  29  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6485729--6485754	9	2.9	9	100	0	52	0	0	7	92	0.39
6486398--6486437	20	2.0	20	90	4	64	0	17	2	80	0.83
6488103--6488134	4	8.0	4	92	0	55	46	0	28	25	1.53
6488100--6488143	12	3.7	12	84	0	52	50	2	22	25	1.61
6489696--6489735	19	2.1	19	86	9	55	0	15	2	82	0.77
6491660--6491724	8	8.6	7	75	18	51	16	0	29	53	1.43
6491683--6491726	15	2.8	16	82	6	54	18	0	31	50	1.47
6491770--6491856	17	5.2	17	72	5	52	25	2	26	45	1.65
6491905--6491987	15	5.7	15	72	12	57	19	0	30	50	1.48
6492027--6492073	13	3.5	13	83	11	67	17	0	27	55	1.42
6491920--6492103	8	24.9	7	68	18	90	18	0	32	49	1.48
6491920--6492125	90	2.3	88	85	6	272	18	0	32	49	1.48
6492253--6492308	18	3.2	19	82	12	66	19	3	1	75	1.05
6492414--6492578	3	55.7	3	80	11	119	35	2	2	60	1.23
6493842--6493884	21	2.0	21	90	4	68	20	6	0	72	1.08
6493842--6493887	22	2.1	22	88	8	67	21	6	0	71	1.08
6496941--6496975	7	5.0	7	100	0	70	57	0	0	42	0.99
6508039--6508067	11	2.6	11	100	0	58	20	0	27	51	1.47
6508094--6508249	52	3.0	52	88	2	217	41	8	25	25	1.84
6508781--6508858	25	3.1	25	76	9	77	38	6	34	20	1.78
6509167--6509323	52	3.0	52	86	1	190	41	8	24	25	1.84
6510844--6510904	20	3.0	20	80	19	72	70	1	26	1	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6510839--6510917	13	6.2	13	74	18	51	69	2	26	1	1.09
6511114--6511166	23	2.3	23	77	6	63	66	3	11	18	1.38
6511107--6511166	23	2.5	23	71	15	59	66	3	11	18	1.36
6511199--6511262	25	2.6	25	70	9	67	67	0	10	21	1.21
6512101--6512198	47	2.1	46	83	7	119	45	26	2	25	1.64
6515362--6515394	17	1.9	17	88	11	50	33	0	0	66	0.92
6515360--6515412	20	2.7	20	79	5	63	26	1	0	71	0.96
6515385--6515438	24	2.2	25	83	6	67	12	7	1	77	1.05
6515405--6515439	18	1.9	18	88	11	54	5	11	2	80	1.00
6516269--6516313	18	2.6	18	92	3	74	13	2	0	84	0.72
6516281--6516329	13	3.7	13	78	10	55	16	4	0	79	0.88
6516269--6516312	23	2.0	22	90	4	70	13	2	0	84	0.73
6516270--6516312	5	8.8	5	82	14	54	13	2	0	83	0.74
6516269--6516331	18	3.6	18	83	10	60	14	4	0	80	0.86
6522491--6522521	16	1.9	16	93	0	53	87	6	0	6	0.68
6522508--6522638	64	2.0	67	80	5	151	60	12	14	12	1.60
6523103--6523149	18	2.7	17	83	6	51	87	4	4	4	0.75
6523103--6523163	11	5.5	11	76	7	52	85	3	8	3	0.82
6523233--6523348	41	2.8	40	80	6	110	31	13	19	35	1.91
6523252--6523353	41	2.5	40	79	4	114	31	13	17	37	1.89
6523586--6523937	118	3.0	117	80	5	386	20	22	13	44	1.86
6524096--6524190	26	3.7	26	80	5	102	25	26	17	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6524240--6524295	22	2.7	20	86	10	76	17	1	1	78	0.92
6524240--6524289	14	3.6	14	88	0	64	18	0	2	80	0.82
6525127--6525171	5	9.2	5	85	9	58	17	0	2	80	0.82
6533070--6533191	64	2.0	61	80	11	140	40	9	9	40	1.70
6533203--6533553	126	2.8	126	82	6	399	35	14	9	41	1.78
6532516--6533394	448	2.0	448	85	4	1184	36	12	11	39	1.79
6537442--6537513	35	2.1	35	97	0	135	31	22	13	31	1.93
6537660--6537869	62	3.4	62	74	5	188	32	12	13	40	1.82
6537600--6537894	126	2.3	124	78	5	313	34	14	12	38	1.83
6538978--6539043	30	2.2	30	86	0	96	37	21	1	39	1.63
6539673--6539711	8	4.9	8	87	0	51	2	7	15	74	1.15
6540193--6540224	2	16.0	2	93	0	55	46	0	3	50	1.17
6542148--6542176	12	2.5	12	94	5	51	72	20	0	6	1.07
6542984--6543016	3	11.0	3	93	0	57	66	3	0	30	1.06
6543581--6543607	3	9.0	3	100	0	54	66	0	0	33	0.92
6543579--6543647	22	3.2	21	72	15	52	66	4	4	24	1.28
6546123--6546329	104	2.0	103	90	3	326	40	13	18	27	1.88
6552617--6552654	16	2.4	16	91	4	60	63	0	0	36	0.95
6552616--6552653	15	2.4	17	82	13	53	65	0	0	34	0.93
6552650--6552694	21	2.2	20	84	11	56	71	4	0	24	1.05
6555191--6555226	18	2.0	18	94	0	63	75	0	0	25	0.81
6559207--6559248	14	3.2	13	80	9	50	83	9	0	7	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6560199--6560747	50	11.0	50	79	5	432	33	12	12	41	1.80
6560177--6560657	150	3.2	150	79	4	504	32	12	13	41	1.82
6561100--6561141	22	1.9	22	85	0	57	64	21	2	11	1.38
6562391--6562441	25	2.1	23	82	7	57	74	0	3	21	0.98
6562662--6562690	12	2.5	12	94	5	51	79	3	0	17	0.87
6565705--6565751	18	2.6	18	76	6	51	63	0	6	29	1.19
6565921--6566269	121	2.9	121	94	3	596	33	17	8	40	1.79
6568338--6568376	18	2.2	17	90	9	60	79	5	0	15	0.90
6568969--6569016	19	2.5	20	89	3	71	43	29	0	27	1.55
6569257--6569376	3	41.3	3	74	15	94	58	1	2	37	1.22
6569270--6569392	22	5.4	22	71	23	85	56	2	3	38	1.29
6569261--6569377	37	3.1	38	79	15	125	57	1	2	38	1.23
6569257--6569392	45	2.9	46	77	12	143	57	2	2	37	1.26
6569258--6569407	27	5.4	26	71	25	87	56	2	4	37	1.32
6569850--6570149	60	5.0	60	75	2	190	36	12	28	22	1.91
6570136--6570272	60	2.3	60	80	2	159	41	13	22	22	1.88
6575046--6575070	13	1.9	13	100	0	50	16	0	4	80	0.87
6575188--6575280	5	17.6	5	71	15	55	73	4	3	19	1.14
6575881--6575928	19	2.5	20	82	3	62	37	29	8	25	1.85
6576170--6576275	3	38.3	3	69	19	61	55	0	5	37	1.30
6576171--6576296	5	24.6	5	70	16	80	53	0	7	38	1.34
6576174--6576267	8	11.8	8	73	17	70	54	1	6	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6576557--6576610	27	2.0	28	85	10	76	18	0	31	50	1.48
6577092--6577166	3	24.3	3	81	5	78	32	4	4	60	1.34
6577750--6577829	23	3.4	23	78	14	76	17	5	40	37	1.72
6579697--6579759	2	31.5	2	74	6	56	44	4	6	44	1.50
6580616--6580693	38	2.1	38	92	0	129	50	14	5	30	1.64
6586422--6586482	32	1.9	32	93	0	104	57	1	1	39	1.18
6588402--6588433	2	16.0	2	100	0	64	50	0	0	50	1.00
6591142--6591167	9	2.9	9	100	0	52	11	57	7	23	1.59
6594085--6594114	15	1.9	16	93	6	53	90	0	10	0	0.47
6597724--6597765	21	2.0	21	100	0	84	19	4	28	47	1.69
6598062--6598167	49	2.2	49	83	5	126	33	19	5	41	1.75
6598382--6598428	24	2.0	24	84	16	62	42	2	0	55	1.12
6605753--6605805	25	2.1	25	82	10	63	50	7	9	32	1.62
6606331--6606449	62	1.9	62	82	3	150	30	17	13	38	1.88
6606353--6608178	293	6.3	289	74	11	1211	33	15	14	36	1.88
6612843--6612888	24	1.9	24	90	0	74	41	0	6	52	1.27
6618333--6618509	18	9.8	18	75	17	145	57	2	0	40	1.11
6618334--6618494	59	2.6	62	83	12	197	55	1	0	42	1.10
6618352--6618494	41	3.4	42	83	12	195	55	1	0	43	1.08
6618422--6618495	23	3.1	24	81	12	82	55	1	0	43	1.08
6618450--6618509	23	2.6	23	81	7	59	61	1	0	36	1.06
6618523--6618568	19	2.4	19	85	7	58	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6618772--6618804	14	2.4	14	94	0	57	39	9	0	51	1.34
6621127--6621161	9	3.9	9	92	0	61	68	11	0	20	1.20
6621768--6621832	16	4.2	16	74	18	75	70	0	1	27	0.96
6621777--6621831	28	1.9	29	89	10	87	70	0	1	27	0.97
6623407--6623447	3	13.7	3	100	0	82	65	0	0	34	0.93
6623472--6623506	15	2.3	15	90	5	52	71	0	5	22	1.07
6623473--6623546	27	2.9	24	77	18	78	70	0	2	27	1.01
6628724--6628784	31	1.9	32	83	3	79	32	16	14	36	1.89
6628806--6628874	32	2.2	32	81	5	77	31	17	20	30	1.95
6629173--6629457	32	8.7	32	73	9	180	37	18	13	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74