genome.fa.s212.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  25  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5835572--5835618	5	9.0	5	86	9	67	74	0	2	23	0.93
5835577--5835627	26	2.0	25	85	14	68	70	1	1	25	1.08
5842018--5842062	17	2.7	17	96	3	83	51	4	0	44	1.21
5842473--5842510	14	2.6	15	88	12	53	50	0	0	50	1.00
5843487--5843525	18	2.2	17	86	4	51	56	2	0	41	1.13
5851623--5851647	2	12.5	2	100	0	50	0	48	0	52	1.00
5851651--5851697	2	23.5	2	95	0	85	46	2	0	51	1.13
5856433--5856521	30	3.0	30	91	0	142	30	24	24	20	1.99
5857569--5857602	15	2.3	15	90	5	52	11	0	14	73	1.10
5866345--5866764	184	2.3	185	84	3	551	35	10	12	40	1.78
5866571--5867164	237	2.5	236	82	6	720	36	11	12	40	1.79
5866571--5867247	238	2.9	235	80	5	722	35	11	12	40	1.79
5867133--5867382	124	2.0	123	86	4	351	32	12	12	42	1.79
5867278--5868111	238	3.5	238	84	2	998	34	11	12	41	1.80
5868720--5868774	28	2.0	28	92	0	92	25	3	18	52	1.61
5868722--5868790	28	2.5	28	85	0	84	27	5	18	47	1.71
5868792--5868882	37	2.5	37	81	0	110	21	7	24	46	1.78
5868778--5868882	12	8.6	12	73	8	77	21	8	24	44	1.80
5872709--5872735	2	13.5	2	100	0	54	0	48	0	51	1.00
5872735--5872775	2	20.5	2	100	0	82	48	0	0	51	1.00
5877527--5877594	30	2.3	30	86	0	91	30	27	22	19	1.97
5883621--5883659	13	2.9	13	85	14	53	82	0	2	15	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5887855--5887901	14	3.1	14	75	24	51	80	2	14	2	0.89
5888252--5888322	10	7.3	10	73	16	51	81	2	7	8	0.95
5888260--5888332	19	3.9	18	76	16	62	82	2	6	8	0.94
5888272--5888320	23	2.1	23	85	7	64	83	4	4	8	0.89
5897530--5897576	24	1.9	24	86	4	67	23	6	0	70	1.10
5897640--5897691	22	2.5	20	84	6	68	30	1	9	57	1.42
5897653--5897733	19	4.2	19	79	6	83	29	4	9	55	1.54
5897748--5897781	14	2.4	14	90	9	52	26	5	14	52	1.64
5899119--5899193	29	2.6	29	82	0	78	29	13	8	49	1.70
5911293--5911326	17	2.1	17	88	5	52	23	5	0	70	1.09
5914923--5914986	24	2.7	24	82	0	83	21	37	20	20	1.94
5919990--5920028	2	19.5	2	100	0	78	0	48	0	51	1.00
5920028--5920066	2	19.5	2	100	0	78	48	0	0	51	1.00
5925540--5925676	61	2.3	61	83	3	179	36	9	9	44	1.70
5926092--5926329	62	3.8	61	73	13	164	44	7	7	39	1.63
5926154--5926329	61	2.8	60	76	12	178	44	7	7	39	1.63
5928989--5929013	7	3.6	7	100	0	50	88	0	0	12	0.53
5929051--5929285	58	4.1	57	84	7	316	35	14	5	44	1.69
5929049--5929276	116	2.0	115	89	5	352	34	14	5	45	1.69
5929277--5929363	28	3.1	26	74	21	70	77	2	6	13	1.08
5929291--5929369	11	7.2	10	77	14	59	78	2	5	13	1.02
5929299--5929369	6	11.5	6	73	16	56	78	1	5	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5929392--5929423	4	7.8	4	93	6	55	75	0	0	25	0.81
5929312--5929423	17	6.8	17	72	18	62	74	2	2	20	1.07
5929312--5929423	12	8.6	13	71	24	69	74	2	2	20	1.07
5930301--5930364	21	3.0	21	75	8	76	67	3	4	25	1.25
5930345--5930499	4	37.2	4	69	16	52	65	3	3	28	1.24
5930311--5930508	14	13.4	14	64	20	59	65	4	3	27	1.27
5930345--5930407	31	2.0	30	81	12	72	63	1	3	31	1.19
5930533--5930572	17	2.4	17	83	8	55	77	2	0	20	0.88
5930726--5930761	10	3.7	10	88	7	56	0	0	11	88	0.50
5930720--5930754	17	2.1	16	89	5	52	2	0	5	91	0.50
5930720--5930760	13	3.2	13	86	3	57	2	0	7	90	0.54
5930768--5931070	41	7.1	41	83	8	322	37	21	16	24	1.94
5930768--5931070	83	3.6	82	81	8	322	37	21	16	24	1.94
5930768--5931070	88	3.5	86	82	9	329	37	21	16	24	1.94
5930804--5931063	130	2.0	130	87	4	382	39	20	16	24	1.92
5932726--5932756	8	3.8	8	95	4	53	9	12	0	77	0.99
5932710--5932767	28	2.1	28	81	9	66	6	13	3	75	1.13
5932726--5932808	32	2.7	32	77	17	86	7	14	0	78	0.95
5933129--5933157	10	2.9	10	100	0	58	0	6	0	93	0.36
5933129--5933164	11	3.4	11	92	3	56	2	5	0	91	0.49
5933125--5933164	10	3.9	10	83	6	53	5	5	0	90	0.57
5935049--5935083	12	2.9	12	91	0	61	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5936107--5936168	30	2.0	31	81	9	74	59	11	6	22	1.54
5936714--5937085	117	3.2	114	85	7	482	35	13	6	44	1.69
5936772--5937103	175	1.9	175	92	3	562	34	14	6	44	1.70
5936714--5937102	58	6.7	56	83	9	399	35	13	6	44	1.69
5938099--5938155	20	2.8	20	91	2	87	70	8	8	12	1.35
5938139--5938222	21	4.2	20	80	10	91	71	2	3	22	1.13
5938129--5938218	42	2.2	42	86	6	121	70	3	5	21	1.23
5938194--5938361	4	41.0	4	70	16	87	65	3	2	28	1.22
5938167--5938361	8	23.6	8	69	18	89	65	3	3	27	1.24
5938152--5938347	42	4.7	42	73	15	138	65	3	3	28	1.22
5938194--5938269	26	3.0	25	81	9	75	65	2	1	30	1.14
5938227--5938300	29	2.6	29	78	17	75	66	4	2	27	1.23
5938385--5938424	17	2.4	17	83	8	55	77	2	0	20	0.88
5945205--5945244	19	2.1	19	85	0	53	45	2	12	40	1.56
5946172--5946205	16	2.1	17	88	5	52	29	5	5	58	1.45
5948304--5948349	17	2.7	17	79	0	56	50	0	2	47	1.13
5950567--5950661	11	8.9	11	65	23	51	47	6	8	37	1.59
5950568--5950693	63	2.0	66	82	7	161	48	6	9	35	1.61
5950631--5950684	22	2.5	22	90	0	81	50	7	11	31	1.66
5950859--5950952	11	8.5	11	85	1	116	50	1	3	45	1.24
5950990--5951106	22	5.4	21	69	9	74	48	5	7	38	1.54
5951245--5951300	22	2.5	23	82	8	71	64	5	3	26	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5951302--5951339	19	2.0	19	89	0	58	42	2	10	44	1.52
5951291--5951407	22	5.5	22	76	6	96	45	4	9	41	1.56
5951519--5951579	22	2.8	22	87	5	79	50	9	3	36	1.52
5952088--5952414	58	5.6	58	85	6	435	34	14	7	43	1.74
5952090--5952439	177	2.0	178	85	7	480	34	13	6	44	1.71
5952088--5952440	119	3.0	118	87	5	507	34	13	7	44	1.72
5954812--5954862	22	2.3	23	86	10	70	7	3	3	84	0.86
5954822--5954870	25	2.0	25	88	8	73	10	4	4	81	0.95
5954952--5954979	14	2.0	14	100	0	56	7	7	0	85	0.73
5954983--5955442	41	11.1	41	89	1	625	36	22	16	24	1.94
5955709--5955814	43	2.5	42	80	10	124	33	17	12	35	1.88
5957148--5957231	19	4.3	19	78	15	75	5	11	0	82	0.84
5957158--5957240	10	8.3	10	79	15	57	6	13	0	80	0.88
5957149--5957233	8	11.1	8	74	9	54	5	12	0	81	0.87
5957158--5957240	11	8.2	10	85	9	82	6	13	0	80	0.88
5961630--5961838	57	3.6	58	86	9	300	35	12	7	44	1.72
5961630--5961865	118	2.0	121	89	3	363	34	12	7	45	1.70
5964332--5964790	22	20.8	21	71	13	199	48	4	8	37	1.56
5964378--5964623	67	3.7	66	78	11	227	49	4	7	38	1.53
5964376--5964626	90	2.8	90	78	8	235	48	5	7	38	1.54
5964700--5964835	66	2.1	65	81	4	157	49	4	8	37	1.54
5964717--5964835	22	5.5	22	73	6	64	47	4	9	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5964907--5964989	25	3.4	24	70	18	64	48	12	6	33	1.65
5964875--5964986	22	5.0	22	72	12	84	47	11	6	34	1.65
5965392--5965499	42	2.5	42	82	7	128	51	10	4	33	1.56
5965419--5965497	21	3.8	21	75	6	88	51	8	2	36	1.47
5965420--5965513	42	2.2	42	83	7	120	51	8	4	36	1.52
5972919--5972981	12	5.0	12	72	11	54	33	1	1	63	1.13
5974291--5974326	3	12.0	3	100	0	72	33	0	0	66	0.92
5974884--5974950	2	32.5	2	88	5	98	46	2	0	50	1.16
5974884--5974951	25	2.9	24	89	8	104	47	2	0	50	1.16
5974986--5975281	151	2.0	149	82	6	355	41	6	4	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74