genome.fa.s212.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  60  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11849100--11849190	39	2.3	39	81	10	114	24	12	4	59	1.51
11859903--11859993	23	4.0	23	69	21	68	32	5	4	57	1.42
11859958--11860005	12	4.1	12	75	5	53	29	4	6	60	1.40
11860791--11860843	22	2.4	22	83	3	61	20	3	1	73	1.08
11861859--11861959	48	2.1	47	82	5	123	44	8	10	35	1.71
11862448--11862487	20	2.0	20	85	9	55	37	22	7	32	1.82
11862224--11862622	108	3.7	108	83	1	485	37	16	9	36	1.82
11862626--11862734	21	4.9	22	81	9	105	42	14	2	40	1.60
11862628--11862734	45	2.4	45	87	0	151	42	14	2	39	1.61
11863867--11863921	8	6.6	8	79	8	65	9	10	3	76	1.13
11863849--11863921	25	2.9	25	76	11	69	10	10	2	75	1.15
11863849--11863923	17	4.5	17	79	1	80	10	12	2	74	1.17
11865991--11866049	23	2.7	21	77	15	57	32	0	5	62	1.17
11869354--11869394	3	13.7	3	89	0	55	41	34	24	0	1.55
11869354--11869398	9	5.0	9	83	0	63	42	33	24	0	1.55
11869357--11869398	18	2.3	18	95	0	75	42	33	23	0	1.55
11880621--11880664	7	6.1	7	94	5	79	27	0	2	70	0.99
11881933--11881989	13	4.2	13	84	6	69	77	8	1	12	1.07
11883947--11883984	6	6.3	6	82	11	51	13	2	0	84	0.73
11885073--11885105	17	1.9	17	88	11	50	15	6	6	72	1.24
11887516--11887578	21	3.0	20	80	13	74	36	7	9	46	1.66
11888158--11888197	20	2.0	20	90	0	62	32	22	15	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11888518--11888564	3	15.7	3	100	0	94	31	0	0	68	0.90
11889660--11889707	18	2.7	17	84	9	60	62	0	0	37	0.95
11889663--11889706	23	2.0	23	95	4	81	63	0	0	36	0.95
11889660--11889720	23	3.1	19	76	19	61	63	0	0	36	0.94
11890201--11890240	21	1.9	21	84	0	53	45	2	7	45	1.45
11891099--11891146	24	2.0	24	100	0	96	54	8	16	20	1.68
11891704--11891785	41	2.0	41	90	0	128	35	7	18	39	1.78
11891850--11892004	81	1.9	80	89	3	240	27	8	32	31	1.86
11896187--11896255	31	2.2	31	97	0	129	39	23	14	23	1.91
11903153--11903190	2	19.0	2	94	0	67	52	0	0	47	1.00
11906105--11906135	14	2.2	14	94	0	53	67	0	9	22	1.19
11908188--11908307	61	2.0	61	96	0	222	47	10	12	30	1.74
11911320--11911345	12	2.2	12	100	0	52	15	0	7	76	0.99
11912294--11912607	155	2.0	155	97	0	592	22	23	7	46	1.77
11917034--11917149	52	2.2	52	85	0	151	28	25	7	38	1.83
11917209--11917250	11	3.8	11	93	0	75	50	28	0	21	1.49
11917209--11917251	22	2.0	22	100	0	86	48	27	0	23	1.51
11917488--11917592	49	2.1	50	78	5	115	19	33	10	37	1.86
11917586--11917670	31	2.7	31	94	0	143	23	25	22	28	1.99
11918156--11918312	52	3.0	51	86	3	215	26	25	8	39	1.84
11918337--11918378	11	3.8	11	93	0	75	50	28	0	21	1.49
11918337--11918379	22	2.0	22	100	0	86	48	27	0	23	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11918500--11918614	59	2.0	57	83	8	144	35	13	16	34	1.87
11924892--11924928	6	5.8	6	87	12	56	18	0	0	81	0.70
11924892--11924928	20	2.0	20	89	10	60	18	0	0	81	0.70
11924931--11924957	14	1.9	14	100	0	54	59	3	0	37	1.15
11924987--11925031	18	2.4	18	81	3	54	42	2	4	51	1.34
11935424--11935471	23	2.2	21	85	10	62	43	2	0	54	1.12
11935456--11935497	16	2.8	16	89	7	61	54	0	0	45	0.99
11935461--11935497	8	4.6	8	86	0	56	56	0	0	43	0.99
11935458--11935505	14	3.3	14	80	11	51	60	0	0	39	0.97
11935461--11935511	26	2.0	24	85	7	66	60	0	0	39	0.97
11938292--11938332	21	2.0	21	90	0	64	34	0	0	65	0.93
11944779--11944812	16	2.2	15	89	5	50	44	2	2	50	1.32
11946836--11946972	72	1.9	73	87	1	204	31	8	17	43	1.78
11950132--11950195	28	2.2	27	86	10	83	40	7	6	45	1.58
11950492--11950538	20	2.3	20	78	7	51	29	2	4	63	1.25
11951610--11951651	16	2.6	17	77	11	52	47	2	9	40	1.49
11956587--11956618	13	2.5	13	94	0	55	65	3	12	18	1.38
11959323--11959366	20	2.2	20	88	4	63	63	0	0	36	0.95
11959590--11959623	14	2.3	15	90	5	52	88	0	2	8	0.62
11966707--11966748	5	8.6	5	80	15	52	61	0	0	38	0.96
11967147--11967224	19	4.2	17	70	12	57	47	0	1	51	1.09
11968247--11968293	24	1.9	25	86	4	69	40	4	0	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11969998--11970039	18	2.3	18	87	4	57	33	2	0	64	1.07
11970074--11970119	23	2.0	23	82	0	56	60	0	0	39	0.97
11971242--11971278	19	1.9	19	89	10	58	37	0	0	62	0.96
11972485--11972509	13	1.9	13	100	0	50	56	0	0	44	0.99
11972789--11972835	24	2.0	24	82	0	58	55	0	0	44	0.99
11975208--11975246	19	2.1	19	90	0	60	30	0	0	69	0.89
11975208--11975249	18	2.3	19	87	4	59	33	0	0	66	0.92
11976468--11976504	19	1.9	19	89	10	58	37	0	0	62	0.96
11979739--11979999	130	2.0	130	87	0	378	41	22	11	23	1.87
11982186--11982249	22	2.9	22	74	6	67	40	1	1	56	1.18
11983840--11983905	2	33.0	2	100	0	132	0	50	0	50	1.00
11984313--11984360	22	2.2	23	85	11	73	50	2	0	47	1.12
11984523--11984564	17	2.4	18	80	4	50	45	0	2	52	1.13
11992123--11992187	19	3.5	17	80	19	69	66	3	4	26	1.26
11992131--11992201	30	2.4	30	85	2	99	66	1	7	25	1.25
11992241--11992325	36	2.4	35	78	20	88	63	8	3	24	1.38
11992241--11992325	17	4.8	17	71	15	57	63	8	3	24	1.38
11992390--11992429	18	2.2	19	86	4	55	45	7	2	45	1.45
11992419--11992457	17	2.2	18	90	4	62	66	5	7	20	1.36
11992664--11992727	20	3.2	20	75	24	73	56	4	10	28	1.54
11993432--11993481	19	2.6	19	83	3	64	26	0	8	66	1.19
12000664--12000848	101	1.8	101	90	0	298	38	10	12	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12001019--12001219	104	1.9	106	87	8	302	29	12	22	35	1.91
12001904--12001935	6	4.9	7	92	7	50	0	9	0	90	0.45
12002765--12002811	13	3.6	13	85	0	67	70	0	2	27	0.99
12002753--12002810	26	2.2	27	93	3	100	65	0	1	32	1.03
12002894--12002922	2	14.5	2	100	0	58	51	0	0	48	1.00
12008535--12008581	20	2.3	21	85	10	71	46	0	0	53	1.00
12008546--12008589	20	2.1	20	87	8	61	52	0	0	47	1.00
12009137--12009174	19	2.0	19	89	0	58	47	0	0	52	1.00
12011839--12011900	8	7.9	8	72	16	58	11	12	1	74	1.15
12012601--12012641	18	2.3	18	91	8	66	17	26	26	29	1.97
12017282--12017327	20	2.3	21	85	14	71	45	0	0	54	0.99
12020567--12020601	9	3.9	9	88	11	54	14	11	0	74	1.08
12020571--12020620	8	6.4	8	77	13	59	12	14	0	74	1.09
12021332--12021372	18	2.3	18	91	8	66	17	26	26	29	1.97
12025982--12026028	21	2.2	22	92	3	78	46	0	0	53	1.00
12026584--12026621	19	2.0	19	89	0	58	47	0	0	52	1.00
12026589--12026688	48	2.0	49	83	14	127	42	5	2	51	1.35
12032963--12032988	10	2.6	10	100	0	52	61	0	0	38	0.96
12039065--12039108	2	22.0	2	95	0	79	52	0	47	0	1.00
12039790--12039841	26	1.9	28	88	7	81	46	1	3	48	1.31
12041900--12041924	13	1.9	13	100	0	50	36	16	16	32	1.90
12043156--12043415	102	2.5	102	96	0	484	44	11	15	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12046887--12047175	154	1.9	155	84	6	390	39	7	10	42	1.68
12053062--12053280	102	2.2	98	80	9	248	41	9	9	39	1.70
12056935--12057017	20	4.2	20	89	4	125	49	1	0	49	1.08
12056932--12057020	39	2.4	37	88	9	135	50	1	0	48	1.08
12057308--12057370	21	3.3	19	73	6	56	68	0	0	31	0.90
12061315--12061454	60	2.3	62	77	13	155	37	4	20	37	1.73
12061423--12061485	31	2.0	31	87	0	90	41	6	14	38	1.71
12063182--12063223	21	2.0	22	85	4	59	14	4	4	76	1.12
12065328--12065417	44	2.1	43	81	10	103	40	16	12	31	1.85
12065402--12065499	43	2.3	43	85	1	124	44	11	9	34	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74