genome.fa.s212.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  19  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4800583--4800631	23	2.1	23	92	7	82	32	16	20	30	1.94
4800114--4800742	175	3.6	173	80	5	687	38	18	18	24	1.93
4800114--4800764	350	1.9	350	83	4	855	38	18	18	24	1.93
4800752--4800822	22	3.3	22	78	11	92	32	16	21	29	1.95
4801063--4801117	23	2.5	22	85	5	74	38	21	14	25	1.92
4800931--4801207	153	1.8	151	86	5	405	40	17	17	25	1.91
4801236--4801660	121	3.5	120	89	2	620	36	15	14	33	1.88
4801728--4801837	41	2.7	41	90	5	161	30	15	19	34	1.93
4803518--4803560	12	3.6	12	90	0	68	4	0	4	90	0.54
4803518--4803560	1	43.0	1	80	0	50	4	0	4	90	0.54
4807601--4807646	21	2.2	21	84	3	58	67	2	2	28	1.14
4808853--4808959	7	14.4	7	70	18	65	16	0	30	52	1.44
4808887--4809006	15	7.7	15	69	16	75	18	1	31	48	1.58
4810565--4810623	15	4.1	14	74	24	52	33	1	0	64	1.04
4810560--4810614	28	1.9	29	85	10	78	32	1	0	65	1.03
4816558--4816702	62	2.3	60	82	10	175	35	15	15	34	1.89
4816590--4816731	62	2.3	61	82	4	160	37	16	14	30	1.90
4819647--4819773	68	1.9	68	93	0	218	37	4	13	44	1.65
4825596--4825646	26	1.9	27	84	4	68	54	3	7	33	1.47
4826289--4826343	27	2.1	27	89	3	85	52	0	3	43	1.18
4826291--4826355	27	2.4	27	79	7	78	52	0	3	44	1.16
4829256--4829298	21	2.0	21	95	0	77	18	11	13	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4831656--4831695	20	2.0	20	100	0	80	30	25	20	25	1.99
4834064--4834142	39	2.0	39	100	0	158	16	17	22	43	1.88
4834867--4834926	28	2.1	30	87	6	88	46	1	1	50	1.21
4834949--4835032	10	8.4	10	83	10	91	55	0	1	42	1.07
4834949--4835032	4	21.5	4	79	4	82	55	0	1	42	1.07
4834949--4835032	6	14.3	6	81	5	82	55	0	1	42	1.07
4835100--4835134	15	2.4	15	85	4	54	60	0	0	40	0.97
4835100--4835134	14	2.4	15	85	9	54	60	0	0	40	0.97
4836164--4836204	11	3.4	12	87	9	57	65	0	2	31	1.05
4851782--4851807	1	26.0	1	100	0	52	0	0	0	100	0.00
4854286--4854360	33	2.2	34	90	6	118	26	12	22	38	1.89
4854122--4854469	135	2.6	134	80	5	348	28	11	21	38	1.88
4854121--4854559	132	3.3	131	76	8	404	27	11	21	39	1.88
4864345--4864744	80	5.0	79	80	3	426	25	8	23	43	1.81
4864345--4864744	160	2.5	158	86	2	532	25	8	23	43	1.81
4871511--4871548	1	38.0	1	100	0	76	0	0	0	100	0.00
4879365--4879390	13	2.0	13	100	0	52	30	7	15	46	1.74
4880024--4880057	16	2.1	16	88	0	50	73	2	17	5	1.16
4880247--4880284	5	7.4	5	94	5	67	81	0	0	18	0.69
4880247--4880284	16	2.4	16	95	4	69	81	0	0	18	0.69
4880316--4880365	3	16.7	3	89	8	75	70	0	2	28	0.99
4880249--4880365	15	7.9	15	70	19	77	67	3	2	26	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4880325--4880373	24	2.1	23	92	3	80	71	0	4	24	1.03
4881160--4881352	27	7.6	27	75	16	132	66	0	3	29	1.13
4881164--4881347	50	3.7	49	82	11	214	66	0	3	29	1.13
4881164--4881340	76	2.3	76	84	10	229	66	0	3	29	1.14
4881218--4881349	4	33.2	4	67	17	62	66	0	3	29	1.12
4881504--4881535	8	3.8	9	95	4	50	9	6	0	84	0.78
4881495--4881535	17	2.5	16	84	7	55	9	7	0	82	0.83
4881550--4882093	44	12.5	44	82	5	586	43	18	13	24	1.86
4881550--4882117	217	2.6	218	82	6	627	43	18	13	24	1.86
4881554--4882093	129	4.1	128	82	7	597	42	18	13	25	1.87
4889784--4889882	48	2.1	48	96	0	180	39	27	10	23	1.86
4890451--4890481	15	2.1	15	93	0	53	51	6	22	19	1.69
4893765--4893820	5	10.6	5	92	3	76	82	1	0	16	0.76
4893757--4893825	28	2.5	27	80	15	86	79	2	1	15	0.92
4893855--4893910	3	18.3	3	82	17	71	67	0	1	30	1.01
4893855--4893909	21	2.6	21	94	2	92	67	0	1	30	1.01
4894371--4894415	21	2.1	21	84	8	56	57	17	0	24	1.40
4894695--4894760	20	3.3	19	76	19	62	68	1	4	25	1.18
4894722--4894760	17	2.2	18	95	4	71	74	0	5	20	1.01
4894677--4894768	18	4.9	18	67	14	53	67	2	4	26	1.21
4894739--4894865	27	4.7	28	76	18	117	65	1	4	28	1.22
4894744--4894869	52	2.4	51	84	7	157	65	1	3	29	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4894801--4894879	25	3.1	25	70	15	63	69	0	2	27	1.01
4911233--4911434	16	12.4	16	65	14	65	39	14	9	36	1.79
4911217--4911351	48	2.8	48	79	11	159	37	13	11	38	1.80
4911283--4911360	31	2.5	31	81	8	88	37	11	11	39	1.78
4911388--4911452	16	4.1	16	76	7	69	46	13	7	32	1.72
4911616--4912019	109	3.7	107	80	6	411	36	13	11	38	1.81
4912002--4912104	21	4.6	23	78	10	106	37	15	5	40	1.71
4913195--4913239	6	8.0	6	77	22	53	15	13	0	71	1.15
4913177--4913271	46	2.1	45	80	5	102	14	11	2	71	1.23
4913195--4913322	16	7.8	16	72	20	70	13	12	0	74	1.08
4913192--4913271	12	7.3	11	74	18	69	12	11	0	76	1.03
4913201--4913296	24	4.1	24	77	16	94	13	11	0	75	1.06
4913223--4913310	40	2.2	40	88	4	126	11	12	0	76	1.03
4913216--4913303	6	12.7	7	77	17	55	12	12	0	75	1.06
4917663--4918019	194	1.8	193	81	6	443	38	9	7	44	1.66
4918538--4918578	19	2.1	20	86	4	57	24	17	2	56	1.53
4918626--4918685	31	1.9	31	83	12	79	75	3	3	18	1.09
4918646--4918686	17	2.4	17	88	12	57	75	0	2	21	0.92
4919644--4919822	60	3.0	59	82	11	188	32	8	7	50	1.61
4920687--4920772	4	21.5	4	70	17	54	67	1	2	29	1.10
4920691--4920774	25	3.3	24	86	9	107	67	1	2	28	1.10
4920737--4920778	18	2.4	18	80	4	50	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4920687--4920776	24	3.8	24	81	10	103	67	1	2	28	1.09
4920963--4921118	43	3.6	43	84	6	165	41	21	14	22	1.90
4920993--4921309	44	7.3	44	80	3	286	44	18	13	23	1.85
4920964--4921330	86	4.2	86	78	5	307	42	19	14	23	1.87
4921097--4921371	44	6.4	41	78	6	176	43	18	13	24	1.86
4930808--4930978	58	3.0	58	79	12	174	35	10	5	48	1.62
4930969--4931120	60	2.5	61	83	4	173	34	11	6	47	1.65
4931179--4931213	3	11.7	3	88	11	54	71	0	0	28	0.86
4931974--4932042	4	17.5	4	74	14	63	68	0	2	28	1.04
4931950--4932040	27	3.5	26	85	11	118	64	2	3	29	1.21
4931975--4932040	24	2.7	24	90	6	98	66	0	3	30	1.06
4936483--4936615	43	3.1	42	79	4	149	29	12	14	44	1.81
4936612--4936662	25	2.1	24	85	3	66	25	9	21	43	1.83
4937379--4937585	3	75.0	3	66	22	71	34	3	5	56	1.39
4937382--4937511	5	26.0	5	71	20	85	37	3	4	53	1.40
4937449--4937525	23	3.3	23	74	20	61	37	3	5	53	1.42
4949369--4949498	60	2.2	60	83	2	154	23	17	14	43	1.86
4949527--4949778	131	1.9	131	81	1	299	28	24	13	33	1.93
4949658--4949906	114	2.2	114	85	1	329	29	24	12	34	1.91
4950280--4950337	22	2.8	20	85	10	73	36	12	1	50	1.50
4950323--4950469	3	54.0	3	67	25	69	35	2	5	57	1.33
4950293--4950489	5	38.0	5	72	17	111	36	4	4	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4950326--4950424	26	4.0	24	73	18	69	36	2	6	55	1.36
4950379--4950484	8	14.1	7	74	21	60	36	1	4	56	1.31
4950293--4950489	16	11.6	16	73	19	125	36	4	4	54	1.41
4952755--4952816	4	15.0	4	81	5	70	22	6	1	69	1.20
4953067--4953099	5	6.6	5	100	0	66	78	0	0	21	0.75
4955100--4955134	12	2.9	12	95	0	61	28	17	37	17	1.92
4961934--4962048	57	2.0	57	91	0	185	32	1	19	46	1.60
4971323--4971360	16	2.4	16	82	4	51	21	2	13	63	1.42
4973000--4973036	17	2.2	17	95	0	65	48	0	32	18	1.49
4978503--4978537	13	2.7	13	95	0	61	77	5	0	17	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74