genome.fa.s212.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  20  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4979521--4979702	16	11.3	16	71	11	113	39	15	10	35	1.82
4979868--4980262	109	3.6	107	80	5	378	35	14	11	38	1.82
4980254--4980342	21	4.1	21	77	8	97	39	17	5	37	1.74
4980256--4980341	45	2.0	42	86	6	118	40	16	5	37	1.72
4980256--4980358	21	4.6	23	74	10	88	37	15	5	40	1.71
4981537--4981623	15	5.8	15	70	18	65	11	12	0	75	1.04
4981538--4981576	13	2.8	14	88	7	53	10	15	0	74	1.07
4981538--4981577	14	2.8	15	85	11	57	10	15	0	75	1.05
4981573--4981630	7	7.9	7	75	17	55	12	8	0	79	0.94
4981573--4981645	23	3.2	23	94	1	121	10	10	0	78	0.98
4981558--4981645	46	1.9	46	84	6	117	10	12	0	77	1.00
4986370--4986420	13	4.1	13	85	7	70	76	1	1	19	0.98
4986371--4986420	4	12.2	4	79	12	57	76	2	2	20	0.99
4986835--4986869	18	1.9	18	88	0	52	25	14	2	57	1.51
4986912--4986958	12	3.8	12	78	18	51	72	2	4	21	1.12
4986923--4986963	17	2.3	18	91	4	66	75	0	2	21	0.92
4991539--4991674	68	2.0	68	97	0	254	38	10	14	36	1.80
4991901--4992027	43	3.0	42	75	4	128	29	14	14	42	1.84
4992850--4993012	5	31.2	5	70	22	70	36	3	6	53	1.45
4992847--4993030	8	22.1	8	69	20	87	35	3	6	54	1.43
4992847--4993031	3	67.3	3	68	20	57	35	3	6	54	1.42
4993850--4993886	19	1.9	19	88	0	56	24	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4993859--4993935	30	2.7	29	79	13	88	24	2	1	71	1.06
4993870--4993944	21	3.9	20	71	20	54	22	4	4	69	1.22
4994025--4994066	21	2.0	21	90	0	66	66	4	7	21	1.35
4994828--4994915	36	2.3	38	86	5	117	20	11	5	62	1.48
4995170--4995226	28	2.0	28	100	0	114	43	21	7	28	1.78
5000028--5000128	48	2.0	51	83	9	129	51	9	21	16	1.74
5000337--5000471	60	2.2	60	77	2	146	25	22	12	38	1.90
5001231--5001298	19	3.4	19	80	11	73	36	10	2	50	1.52
5001274--5001430	8	19.4	8	67	26	66	36	1	5	56	1.31
5001244--5001396	5	30.0	5	73	16	109	37	3	4	54	1.40
5001285--5001388	13	7.5	13	69	23	54	36	0	6	55	1.33
5001244--5001430	16	11.5	16	71	19	113	36	3	4	55	1.39
5001294--5001411	23	5.3	23	74	17	72	36	1	6	55	1.37
5002242--5002295	20	2.8	19	78	10	58	16	5	3	74	1.16
5002385--5002426	21	2.0	21	90	0	66	66	4	7	21	1.35
5003683--5003732	4	12.0	4	80	6	55	22	6	2	70	1.20
5006506--5006568	31	2.1	29	91	5	99	52	6	25	15	1.66
5008299--5008351	22	2.4	23	81	12	67	18	16	13	50	1.77
5010860--5010904	13	3.5	13	81	6	65	31	20	8	40	1.83
5015879--5015916	21	1.9	19	85	15	51	84	5	7	2	0.86
5031179--5031436	126	2.0	126	100	0	516	38	10	18	32	1.85
5031230--5031424	63	3.1	63	60	21	145	38	9	20	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5037616--5037650	17	2.0	17	88	5	52	25	14	0	60	1.35
5038338--5038469	15	8.5	15	70	12	72	38	12	11	37	1.80
5038326--5038485	47	3.4	47	78	5	173	36	14	11	38	1.82
5038420--5038516	16	6.0	15	73	19	54	35	15	12	37	1.85
5038410--5038516	34	3.3	33	73	10	87	35	15	11	37	1.84
5038507--5038573	16	4.2	16	69	7	64	40	11	13	34	1.81
5038735--5039147	109	3.8	109	82	5	460	35	14	10	39	1.81
5038735--5039187	217	2.1	219	81	3	529	35	14	9	39	1.80
5039131--5039211	24	3.6	23	80	9	87	37	14	4	43	1.68
5040364--5040483	15	7.5	15	74	20	84	10	13	0	75	1.04
5040374--5040476	26	3.9	25	79	11	89	9	11	0	78	0.96
5040391--5040475	7	11.7	7	76	14	50	10	11	0	77	0.99
5040353--5040491	8	17.0	8	74	14	99	10	15	0	74	1.08
5040362--5040491	26	5.4	24	72	17	72	10	14	0	74	1.07
5040353--5040491	17	8.5	16	78	16	126	10	15	0	74	1.08
5049210--5049266	12	4.6	12	73	16	53	33	0	0	66	0.92
5049205--5049309	38	2.8	37	81	7	104	40	0	0	60	0.97
5049258--5049307	20	2.5	20	81	9	59	46	0	0	54	1.00
5051244--5051376	43	3.1	43	81	6	153	28	12	13	45	1.80
5052170--5052361	3	68.0	3	69	21	87	34	4	5	56	1.41
5052150--5052361	11	18.9	11	72	15	125	34	4	5	55	1.43
5052173--5052364	5	34.8	5	74	18	93	34	4	5	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5052192--5052364	8	20.5	8	70	24	83	34	2	5	57	1.38
5052170--5052361	16	11.3	18	72	17	87	34	4	5	56	1.41
5052197--5052377	21	8.7	20	72	24	103	34	2	5	57	1.36
5053175--5053209	13	2.8	12	91	8	61	14	0	2	82	0.77
5054141--5054223	35	2.2	37	87	8	116	20	10	4	63	1.44
5063703--5063852	52	3.0	49	81	9	167	57	11	14	17	1.65
5063704--5063843	50	2.8	50	82	6	174	57	11	14	16	1.64
5065287--5065471	3	67.0	3	65	25	70	35	2	4	57	1.32
5065290--5065441	5	28.8	5	74	17	105	36	1	5	55	1.33
5065287--5065441	8	18.5	8	72	23	83	36	1	5	56	1.33
5066246--5066281	13	2.8	13	95	4	65	13	5	0	80	0.88
5066235--5066286	19	2.8	17	80	13	59	9	7	0	82	0.84
5066235--5066312	13	6.3	12	72	15	61	14	6	1	78	1.01
5067271--5067314	21	2.2	20	84	12	54	20	2	9	68	1.28
5067271--5067314	20	2.2	20	84	8	54	20	2	9	68	1.28
5067748--5067784	4	9.2	4	93	0	65	24	2	0	72	0.97
5072315--5072356	22	1.9	22	90	9	68	21	16	16	45	1.86
5072310--5072363	22	2.5	22	82	11	67	16	16	14	51	1.76
5079944--5079981	2	19.5	2	83	5	51	50	5	0	44	1.24
5080219--5080287	2	31.5	2	83	16	84	46	8	0	44	1.34
5080219--5080284	7	9.9	7	98	1	111	45	9	0	45	1.35
5082067--5082116	14	3.2	16	80	13	59	60	0	10	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5082072--5082127	17	3.6	16	73	23	57	57	0	10	32	1.33
5091029--5091088	30	2.0	31	83	9	79	1	10	13	75	1.13
5095368--5095406	15	2.4	16	83	8	53	38	0	0	61	0.96
5098783--5098818	2	18.0	2	100	0	72	50	0	0	50	1.00
5101474--5101498	6	4.2	6	100	0	50	48	0	0	52	1.00
5102838--5102886	23	2.1	23	88	0	71	32	6	0	61	1.21
5116090--5116116	13	2.1	13	100	0	54	62	0	22	14	1.31
5122710--5122794	30	2.8	30	80	0	98	24	8	31	35	1.85
5124799--5124844	22	2.1	22	100	0	92	34	0	17	47	1.48
5127279--5127322	13	3.4	13	81	9	54	63	0	0	36	0.95
5128098--5128163	23	2.8	25	81	9	75	39	6	0	54	1.25
5128195--5128240	23	2.1	22	84	8	58	54	8	0	36	1.32
5129789--5129819	12	2.6	12	94	0	53	41	0	22	35	1.54
5140424--5140467	22	2.0	22	90	0	70	31	11	11	45	1.76
5140631--5140683	25	2.1	26	82	6	74	15	26	16	41	1.88
5144326--5144369	22	2.0	22	90	0	70	34	11	11	43	1.77
5145639--5145873	115	2.0	115	90	0	371	34	18	15	31	1.92
5151131--5151174	22	2.0	22	86	0	61	34	11	9	45	1.72
5154222--5154285	18	3.8	17	81	6	60	64	4	1	29	1.23
5154210--5154284	15	4.6	15	73	23	55	62	5	1	30	1.25
5155219--5155309	35	2.6	35	79	8	114	40	8	4	46	1.55
5155365--5155404	21	1.9	21	89	0	62	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5155490--5155594	48	2.2	48	98	0	201	40	9	19	30	1.83
5156373--5156418	22	2.1	22	88	8	67	23	19	0	56	1.42
5162103--5162129	12	2.2	12	100	0	54	48	11	18	22	1.79
5166481--5166511	1	31.0	1	100	0	62	100	0	0	0	0.00
5166888--5166930	18	2.3	18	88	4	59	69	4	0	25	1.07
5166975--5167029	28	1.9	29	88	3	85	72	1	0	25	0.94
5167895--5167921	2	13.5	2	100	0	54	51	0	0	48	1.00
5173537--5173583	22	2.2	22	84	3	60	31	10	8	48	1.68
5178915--5178962	15	3.3	15	76	2	53	29	0	0	70	0.87
5178889--5178981	29	3.1	28	80	9	105	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74