genome.fa.s212.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  5  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115519--1115651	11	10.9	13	67	24	76	38	17	3	40	1.67
1115409--1115675	96	2.8	96	88	1	383	38	17	3	40	1.68
1118954--1119308	22	16.1	22	74	7	218	50	5	8	36	1.54
1119046--1119398	156	2.3	154	78	5	329	49	6	8	35	1.58
1119352--1119420	22	3.2	22	77	8	70	44	10	13	31	1.76
1119437--1119484	22	2.2	21	79	13	53	41	2	10	45	1.50
1119450--1119574	22	5.7	22	74	7	85	40	6	12	41	1.68
1119573--1119689	22	5.4	22	74	6	76	44	4	8	42	1.54
1120241--1120338	22	4.5	20	74	15	79	47	6	4	41	1.47
1120229--1120320	44	2.1	44	83	4	114	46	4	5	43	1.46
1120238--1120333	44	2.2	44	81	3	113	47	5	5	41	1.48
1120253--1120355	44	2.3	44	79	0	107	51	5	2	39	1.41
1120348--1120489	22	6.8	22	69	11	82	45	10	11	33	1.74
1120322--1120484	81	2.0	81	98	0	317	46	9	9	34	1.70
1120718--1120760	22	2.0	22	85	0	59	46	2	4	46	1.36
1123214--1123264	25	2.0	25	96	0	93	13	35	7	43	1.73
1123585--1123611	14	1.9	14	100	0	54	44	3	0	51	1.19
1124119--1124281	81	2.0	81	90	0	254	46	9	9	33	1.70
1124223--1124265	22	2.0	22	85	0	59	51	9	9	30	1.65
1124515--1124557	22	2.0	22	85	0	59	46	2	4	46	1.36
1129785--1129835	2	25.5	2	87	0	75	45	1	1	50	1.24
1133391--1133489	45	2.2	46	87	8	141	29	9	6	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1135386--1135425	20	1.9	21	85	10	55	32	15	10	42	1.79
1135364--1135654	108	2.7	107	83	3	379	35	15	11	37	1.84
1135505--1135542	20	1.9	20	88	0	58	34	21	10	34	1.87
1135729--1135850	14	10.0	13	70	27	74	38	14	3	43	1.62
1135743--1135940	24	8.3	24	86	5	267	38	14	4	42	1.65
1135743--1135940	48	4.1	48	89	1	299	38	14	4	42	1.65
1135779--1135846	10	6.1	10	73	21	55	39	13	1	45	1.52
1135747--1135936	95	2.0	96	90	1	301	37	15	3	43	1.62
1136468--1136661	79	2.5	79	80	0	226	33	22	7	36	1.82
1137300--1137349	19	2.5	20	87	6	66	10	18	0	72	1.12
1140657--1140877	109	2.0	109	100	0	442	52	11	9	26	1.69
1142483--1142518	2	19.5	2	83	16	51	0	47	0	52	1.00
1143003--1143032	12	2.4	12	94	5	51	6	0	6	86	0.70
1144535--1144564	14	2.1	15	93	6	53	66	13	13	6	1.43
1153231--1153261	2	15.5	2	100	0	62	51	0	0	48	1.00
1155584--1155609	5	5.2	5	100	0	52	0	38	0	61	0.96
1157552--1157591	15	2.6	16	80	8	55	20	7	20	52	1.70
1172509--1172549	2	20.5	2	100	0	82	48	0	0	51	1.00
1182071--1182095	6	4.2	6	100	0	50	16	36	0	48	1.46
1186008--1186047	11	3.7	10	84	15	53	57	2	0	40	1.12
1186006--1186047	22	1.9	22	90	9	68	57	2	0	40	1.12
1186005--1186061	22	2.5	23	80	5	62	57	1	0	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1186077--1186128	18	2.8	18	73	2	50	55	1	0	42	1.10
1192069--1192304	120	2.0	120	93	0	400	42	11	4	41	1.61
1193707--1194060	180	2.0	180	89	1	548	29	18	24	27	1.98
1201788--1201851	22	2.7	23	79	13	67	48	3	1	46	1.27
1203743--1203929	93	2.0	93	97	0	356	24	22	18	34	1.96
1205694--1205739	24	1.9	24	81	0	56	28	2	43	26	1.66
1205693--1205731	15	2.6	15	76	15	53	30	2	41	25	1.69
1214331--1214356	3	8.7	3	100	0	52	65	0	34	0	0.93
1217530--1217570	8	5.2	8	85	2	57	58	0	0	41	0.98
1217534--1217585	26	2.1	24	85	7	68	59	0	0	40	0.97
1218470--1218534	29	2.2	28	84	10	78	41	4	3	50	1.38
1237224--1237275	22	2.4	22	74	22	56	55	0	1	42	1.10
1260947--1261048	40	2.4	43	85	8	129	35	5	3	54	1.43
1263903--1263987	42	2.0	42	95	0	152	31	15	15	37	1.88
1265012--1265050	12	3.2	12	82	13	53	46	0	2	51	1.14
1270208--1270236	11	2.6	11	100	0	58	72	0	0	27	0.85
1270932--1271188	136	1.9	137	93	0	444	36	7	13	42	1.73
1273832--1273874	2	21.5	2	95	0	50	51	39	0	9	1.34
1274013--1274066	18	2.8	19	75	8	56	40	9	5	44	1.60
1287260--1287308	26	2.0	24	85	14	66	42	0	0	57	0.99
1288659--1288724	34	2.0	33	82	8	80	46	1	0	51	1.10
1300361--1300392	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302002--1302059	28	2.1	28	83	6	73	34	20	25	18	1.96
1306061--1306134	30	2.4	31	81	4	78	37	4	5	52	1.43
1322503--1322535	14	2.4	14	90	5	50	42	0	3	54	1.15
1322634--1322751	48	2.4	47	78	8	121	51	3	3	41	1.35
1323885--1323957	36	2.0	36	97	0	137	21	30	12	35	1.90
1326059--1326103	23	1.9	24	86	4	65	44	0	4	51	1.21
1326151--1326191	13	3.2	13	82	6	57	65	2	0	31	1.05
1335633--1335676	22	2.0	22	91	8	72	45	13	9	31	1.75
1339578--1339621	22	2.0	22	95	0	79	43	13	11	31	1.80
1341675--1341718	18	2.3	20	80	7	56	50	0	0	50	1.00
1341885--1341911	14	1.9	14	100	0	54	29	7	0	62	1.22
1343633--1343735	52	2.0	52	94	0	179	39	15	18	26	1.90
1345732--1345773	21	2.0	21	100	0	84	38	14	14	33	1.86
1352906--1352969	33	1.9	33	100	0	128	57	6	9	26	1.54
1354422--1354505	31	2.6	32	81	14	93	47	1	1	50	1.16
1354489--1354528	19	2.1	19	86	9	55	47	0	0	52	1.00
1357863--1358283	54	7.8	54	76	4	319	28	18	20	33	1.96
1364194--1364237	13	3.0	15	80	12	56	47	2	0	50	1.13
1365152--1365176	12	2.1	12	100	0	50	16	16	28	40	1.89
1380064--1380297	117	2.0	116	90	0	369	34	22	13	29	1.93
1382387--1382424	2	19.0	2	100	0	76	0	50	0	50	1.00
1384992--1385038	23	2.0	25	83	8	62	44	4	0	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1386941--1387003	33	1.9	33	86	0	90	28	25	14	31	1.95
1394091--1394129	18	2.1	20	86	13	57	82	2	7	7	0.94
1394298--1394380	44	2.0	44	85	7	118	53	4	10	31	1.57
1394662--1394691	12	2.5	12	88	0	51	63	0	0	36	0.95
1394775--1394830	28	2.0	28	82	6	69	51	0	1	46	1.11
1395089--1395159	30	2.4	30	81	9	74	45	0	0	54	0.99
1395122--1395169	23	2.0	23	84	4	60	45	0	0	54	0.99
1395150--1395210	20	3.1	20	83	2	70	45	1	0	52	1.10
1404589--1404641	18	2.9	18	83	5	54	33	20	3	41	1.70
1404628--1404686	29	2.0	30	90	3	93	44	13	3	38	1.61
1404787--1404830	22	2.0	22	95	0	79	50	6	4	38	1.50
1405015--1405042	6	4.7	6	100	0	56	50	0	0	50	1.00
1405180--1405218	20	2.0	20	85	10	53	71	20	0	7	1.10
1406999--1407060	26	2.4	28	82	17	73	48	0	0	51	1.00
1407061--1407121	20	2.9	22	77	20	60	50	0	0	49	1.00
1407074--1407122	19	2.5	20	83	3	64	53	0	0	46	1.00
1410829--1410900	36	2.0	36	91	0	117	27	13	25	33	1.94
1415982--1416342	174	2.0	177	89	6	557	25	15	18	40	1.89
1423725--1423778	19	2.8	19	78	8	56	46	0	0	53	1.00
1424474--1424511	17	2.2	18	85	4	51	60	0	7	31	1.25
1424112--1424570	223	2.1	220	79	6	482	54	6	8	30	1.55
1428313--1429544	408	3.0	408	95	2	2231	35	6	15	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440061--1440097	18	2.0	19	94	5	67	48	16	5	29	1.68
1448002--1448103	52	2.0	52	90	0	159	44	4	19	31	1.72
1449819--1449848	6	5.0	6	91	0	51	3	16	0	80	0.85
1454289--1454347	20	2.8	21	82	7	66	20	5	5	69	1.27
1455712--1455819	53	2.0	53	82	7	130	52	10	10	26	1.67
1456898--1456934	12	3.0	13	92	7	60	21	21	8	48	1.76
1456900--1456939	12	3.3	12	89	6	55	20	20	7	52	1.70
1459387--1459425	17	2.3	17	95	0	69	43	33	7	15	1.75
1467316--1467723	44	9.3	44	83	5	452	25	12	17	44	1.84
1473970--1474154	57	3.2	57	84	6	232	29	40	16	14	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74