genome.fa.s212.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  13  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3618377--3618440	21	3.0	21	74	19	69	40	9	0	50	1.35
3618313--3618905	218	2.7	216	81	7	648	30	9	5	54	1.57
3618798--3618857	25	2.5	23	81	10	66	33	8	0	58	1.28
3618323--3619029	218	3.2	218	81	5	601	30	10	5	52	1.60
3618599--3619061	222	2.1	219	80	5	509	30	11	6	51	1.62
3619301--3619357	26	2.2	27	84	6	73	49	0	1	49	1.11
3619856--3619940	38	2.3	37	87	6	118	45	9	15	29	1.77
3619855--3619940	19	4.6	18	73	18	77	45	9	15	30	1.77
3621627--3621684	26	2.2	27	82	14	77	46	0	0	53	1.00
3621635--3621687	26	2.1	24	89	6	79	49	0	0	50	1.00
3627103--3627131	14	2.1	14	100	0	58	24	0	13	62	1.32
3628092--3628128	19	1.9	19	94	0	65	32	21	10	35	1.88
3632756--3632907	71	2.1	71	97	1	286	47	9	9	32	1.70
3641444--3641469	13	2.0	13	100	0	52	38	0	23	38	1.55
3643443--3643522	23	3.3	23	73	18	72	53	1	2	42	1.22
3646744--3647003	130	2.0	131	89	3	396	39	14	21	25	1.91
3651627--3651704	29	2.8	28	79	7	97	55	10	7	26	1.60
3651749--3651801	27	1.9	28	88	3	81	62	3	1	32	1.24
3651818--3651863	18	2.6	18	78	0	56	36	0	0	63	0.95
3652669--3652707	17	2.5	15	84	12	51	69	0	2	28	1.02
3652631--3652776	73	2.0	73	95	0	265	50	2	6	40	1.41
3652977--3653033	24	2.2	24	84	9	69	36	3	0	59	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3653201--3653255	8	6.9	8	87	0	56	38	0	12	49	1.41
3653201--3653246	10	4.6	10	86	0	56	39	0	10	50	1.38
3653204--3653238	2	17.5	2	93	0	52	42	0	5	51	1.25
3653255--3653289	2	17.5	2	100	0	70	51	0	48	0	1.00
3655648--3655702	27	2.0	27	85	0	74	34	12	9	43	1.74
3658609--3658679	20	3.5	21	74	11	67	35	1	5	57	1.31
3658791--3658831	18	2.2	20	86	8	59	26	7	0	65	1.18
3658973--3659413	217	2.0	216	79	5	458	31	10	6	50	1.63
3659850--3660276	220	1.9	221	79	3	477	30	9	7	51	1.62
3660192--3660248	21	2.7	21	78	8	62	38	5	7	49	1.53
3660302--3660440	67	2.1	67	80	2	154	31	15	7	46	1.73
3658557--3660512	923	2.1	926	80	5	2159	31	10	6	52	1.60
3660378--3661188	217	3.7	219	77	10	567	30	11	6	51	1.62
3661931--3661998	18	3.7	18	78	7	73	44	11	13	30	1.79
3663808--3663844	19	1.9	19	94	0	65	29	18	16	35	1.93
3666383--3666807	219	1.9	217	80	6	491	32	9	6	51	1.60
3667064--3667694	218	2.9	214	79	7	598	31	9	6	52	1.59
3668333--3668357	13	1.9	13	100	0	50	36	0	0	64	0.94
3668542--3668571	13	2.3	13	94	0	51	20	6	3	70	1.25
3670840--3671037	58	3.4	58	84	6	240	46	5	11	36	1.63
3670961--3671131	74	2.3	73	82	5	193	50	5	10	33	1.59
3670985--3671131	74	2.0	74	84	0	195	48	4	12	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3670927--3671169	133	1.8	132	85	7	341	47	6	11	34	1.66
3671265--3671301	17	2.1	18	90	5	58	8	16	0	75	1.02
3675158--3675230	7	9.6	8	73	16	66	73	1	23	1	0.98
3675167--3675235	12	5.1	14	72	16	58	75	1	20	2	1.01
3675227--3675263	16	2.2	18	90	9	60	75	0	13	10	1.04
3675212--3675268	24	2.5	22	77	11	60	77	0	14	8	0.99
3676448--3676793	25	14.8	24	80	11	312	36	8	15	39	1.79
3676448--3676840	46	8.4	47	79	12	311	37	8	15	38	1.78
3676862--3676939	21	3.8	21	88	5	106	35	10	16	37	1.83
3677049--3677131	22	3.8	22	66	15	55	27	12	20	39	1.88
3677003--3677242	114	2.1	114	92	0	408	33	15	16	34	1.90
3677358--3677400	16	2.7	16	81	0	50	23	18	18	39	1.92
3677612--3678053	44	9.9	43	78	6	312	22	11	19	46	1.81
3677610--3677999	88	4.4	87	78	7	358	22	11	19	46	1.81
3677645--3678035	179	2.2	177	85	6	531	23	11	19	45	1.83
3677791--3678050	134	1.9	132	83	5	326	23	11	19	45	1.83
3678716--3678754	20	2.0	20	89	0	60	28	33	17	20	1.96
3680532--3681027	60	8.1	57	70	17	268	46	5	11	36	1.64
3680771--3680804	15	2.2	16	89	5	52	50	5	0	44	1.26
3680807--3681028	119	1.9	119	83	6	297	45	5	12	36	1.66
3682101--3682146	22	2.1	21	84	11	58	32	4	0	63	1.14
3683391--3683465	19	3.9	19	73	15	73	44	9	16	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3683914--3684000	34	2.6	34	73	12	97	40	6	4	48	1.51
3686948--3687018	35	2.0	35	94	0	124	35	12	19	32	1.90
3692315--3692402	19	4.7	18	76	15	88	45	10	14	29	1.78
3692315--3692402	39	2.3	37	88	3	122	45	10	14	29	1.78
3692750--3692902	24	6.3	24	67	13	73	43	8	3	45	1.50
3692827--3692883	13	4.8	12	81	14	50	47	10	0	42	1.38
3692823--3692883	11	5.4	11	74	18	54	44	9	0	45	1.37
3694139--3694198	29	2.2	28	80	13	72	46	0	0	53	1.00
3696264--3696288	2	12.5	2	100	0	50	52	0	0	48	1.00
3700456--3700492	19	1.9	19	88	0	56	32	18	13	35	1.90
3710079--3710151	25	2.9	25	82	15	73	43	1	1	53	1.17
3710077--3710132	26	2.3	23	77	19	60	39	0	1	58	1.08
3711121--3711156	2	18.5	2	94	5	65	50	0	0	50	1.00
3729128--3729154	2	13.5	2	100	0	54	51	0	0	48	1.00
3729538--3729608	31	2.3	29	83	11	81	50	1	1	46	1.18
3729544--3729598	18	2.9	18	72	5	56	58	1	1	38	1.20
3729538--3729608	30	2.3	31	83	11	85	50	1	1	46	1.18
3734689--3734739	4	12.8	4	76	15	52	27	0	1	70	0.98
3734689--3734739	11	5.0	11	75	18	56	27	0	1	70	0.98
3734689--3734739	21	2.5	20	77	20	61	27	0	1	70	0.98
3734923--3735203	55	4.9	56	80	7	316	52	5	7	33	1.54
3734897--3735280	171	2.2	173	82	7	460	52	6	8	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3740123--3740149	2	13.5	2	100	0	54	48	0	0	51	1.00
3740715--3740767	26	2.0	27	89	10	83	45	15	5	33	1.69
3745109--3745159	21	2.5	21	90	3	86	49	0	1	49	1.12
3745144--3745183	16	2.6	16	88	7	57	55	2	0	42	1.13
3745795--3745838	18	2.3	18	88	7	61	34	0	6	59	1.24
3746570--3746616	21	2.2	21	85	7	69	57	0	0	42	0.98
3747795--3747819	13	1.9	13	100	0	50	56	0	12	32	1.36
3748823--3749348	125	4.3	124	76	9	402	39	7	11	41	1.69
3749010--3749374	121	3.0	120	77	6	299	41	6	10	41	1.67
3753146--3753293	74	2.0	71	89	6	226	18	14	35	31	1.91
3753330--3753373	22	2.0	22	95	0	79	56	4	25	13	1.56
3753638--3753672	18	1.9	18	100	0	70	31	45	17	5	1.71
3757672--3757708	17	2.1	18	90	5	58	70	5	5	18	1.27
3757944--3757998	20	2.8	19	81	13	58	74	3	7	14	1.17
3762748--3762781	17	1.9	18	88	5	52	61	0	0	38	0.96
3762975--3763030	3	19.3	3	77	17	57	28	1	1	67	1.10
3762982--3763048	29	2.2	32	84	12	88	28	2	2	65	1.22
3763170--3763226	22	2.5	22	70	13	53	77	1	5	15	1.03
3765565--3765601	6	6.2	6	100	0	74	35	16	48	0	1.46
3773297--3773344	14	3.5	13	86	8	69	43	2	0	54	1.12
3773297--3773351	14	4.0	13	79	9	56	43	3	0	52	1.18
3773335--3773389	27	2.0	28	85	3	76	38	9	0	52	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3775602--3775650	24	2.0	24	92	4	80	55	0	2	42	1.11
3777740--3777789	25	2.0	25	84	0	64	50	2	2	46	1.24
3777750--3777800	25	2.0	25	85	7	68	56	0	0	43	0.99
3781597--3781634	18	2.1	19	95	5	69	73	0	2	23	0.95
3782428--3782457	6	4.8	6	95	4	51	13	0	0	86	0.57
3782426--3782458	7	5.0	7	92	7	52	15	0	0	84	0.61
3782466--3782732	58	4.6	57	83	9	335	47	5	10	36	1.62
3782489--3782715	117	1.9	116	88	4	341	47	4	12	35	1.62
3786041--3786074	15	2.3	15	89	0	50	29	23	0	47	1.52
3792967--3793020	16	3.5	15	82	5	56	79	0	9	11	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74