genome.fa.s212.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  70  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13714279--13714331	15	3.5	15	72	23	56	64	7	9	18	1.47
13714279--13714332	16	3.4	16	72	23	60	64	7	9	18	1.45
13714276--13714346	31	2.3	30	90	2	115	61	7	11	19	1.51
13714980--13715011	12	2.8	12	95	4	57	71	0	0	28	0.86
13716060--13716121	28	2.2	28	83	8	74	53	1	0	45	1.10
13720423--13720452	13	2.3	13	94	0	51	50	0	0	50	1.00
13720423--13720452	15	2.0	15	93	0	51	50	0	0	50	1.00
13720647--13720674	2	14.0	2	100	0	56	50	0	0	50	1.00
13723583--13723617	2	17.5	2	87	0	52	48	2	2	45	1.32
13724064--13724090	2	13.5	2	100	0	54	51	0	0	48	1.00
13724534--13724566	17	1.9	17	93	0	57	39	6	9	45	1.61
13725823--13725949	32	3.8	32	70	14	94	50	2	1	45	1.24
13725915--13725952	20	1.9	20	84	10	51	55	0	0	44	0.99
13728557--13728608	27	2.0	26	82	17	63	73	3	7	15	1.21
13728752--13728825	39	2.0	36	84	7	94	52	2	0	44	1.15
13728702--13728840	32	4.4	32	73	9	124	47	2	1	48	1.22
13728950--13728994	15	3.0	15	80	0	54	35	8	0	55	1.31
13731560--13731609	26	1.9	26	88	8	75	52	2	2	44	1.24
13731722--13731746	2	12.5	2	100	0	50	52	0	0	48	1.00
13732522--13732569	19	2.5	19	79	3	51	64	2	2	31	1.16
13733262--13733316	23	2.3	23	81	3	56	12	12	7	67	1.42
13733355--13733385	16	1.9	16	93	0	53	83	3	3	9	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13741321--13741366	21	2.2	21	84	3	58	50	8	23	17	1.74
13741917--13742052	73	1.9	72	81	1	164	40	8	10	41	1.69
13742041--13742143	34	3.1	33	78	6	93	39	13	8	37	1.76
13744242--13744298	17	3.4	17	80	9	55	43	3	1	50	1.29
13744267--13744299	17	1.9	17	93	0	57	42	0	3	54	1.15
13744368--13744417	22	2.3	22	82	3	57	60	0	2	38	1.09
13744383--13744443	28	2.3	25	81	10	68	59	1	0	39	1.08
13745601--13745669	32	2.2	33	89	5	106	57	4	11	26	1.52
13751759--13751892	32	4.0	32	65	18	83	48	2	0	48	1.19
13765205--13765273	26	2.7	26	86	0	84	43	17	15	23	1.87
13765447--13765512	30	2.2	30	81	10	73	54	3	3	39	1.31
13766066--13766133	2	34.0	2	90	0	109	45	0	2	51	1.16
13766910--13766947	16	2.3	17	95	4	69	42	5	5	47	1.48
13766906--13766949	16	2.4	19	75	25	58	40	4	4	50	1.43
13771199--13771224	11	2.4	11	100	0	52	46	0	11	42	1.40
13772331--13772478	40	3.7	40	75	0	125	41	12	15	30	1.84
13773656--13773700	10	4.5	10	88	0	63	88	0	6	4	0.61
13774686--13774729	19	2.3	19	88	0	70	45	36	4	13	1.64
13774810--13774863	19	2.8	20	79	17	62	16	0	3	79	0.87
13774813--13774879	25	2.7	24	82	11	73	19	1	4	74	1.07
13774815--13774974	4	37.8	4	69	19	69	27	1	3	67	1.15
13774850--13774975	25	5.3	23	69	20	64	30	1	3	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13774817--13774955	33	4.0	34	76	15	108	27	1	3	67	1.15
13775026--13775059	16	2.1	16	94	0	59	11	8	11	67	1.42
13775888--13775991	25	4.6	21	70	21	61	19	2	2	75	1.06
13775945--13776014	5	13.0	5	74	15	52	15	4	2	77	1.05
13775951--13776024	23	3.3	21	75	16	69	16	4	2	77	1.04
13775950--13776029	16	4.8	16	76	11	72	16	5	2	76	1.07
13776029--13776441	60	6.9	59	81	10	459	47	5	11	34	1.63
13786860--13786918	9	7.0	8	85	14	75	74	0	11	13	1.07
13786869--13786933	9	7.1	9	81	8	78	76	0	12	10	1.01
13787937--13788201	44	6.2	44	86	7	352	24	15	21	38	1.92
13787971--13788201	82	2.8	83	88	5	324	24	16	21	38	1.93
13788207--13788268	1	62.0	1	78	0	61	88	9	1	0	0.58
13788210--13788268	25	2.5	24	86	5	84	88	10	1	0	0.60
13788209--13788267	31	1.9	30	96	3	109	88	10	1	0	0.60
13788477--13788598	4	28.8	4	69	18	61	31	1	3	63	1.20
13788474--13788599	25	5.3	23	69	20	64	30	1	3	64	1.19
13788465--13788579	37	3.2	34	74	18	101	30	1	3	64	1.20
13788653--13788686	16	2.1	16	94	0	59	11	8	11	67	1.42
13789505--13789530	12	2.2	12	100	0	52	15	0	0	84	0.62
13789561--13789598	19	2.0	19	90	10	60	15	0	5	78	0.91
13789643--13790105	61	7.7	59	84	9	582	46	6	11	34	1.67
13790701--13790812	13	8.7	13	74	16	90	41	36	0	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13790701--13790773	25	2.8	26	81	6	94	41	34	0	24	1.55
13790702--13790799	26	3.8	26	80	10	101	41	36	0	21	1.53
13790629--13790812	13	14.2	13	66	15	76	40	36	0	21	1.58
13790622--13790815	20	9.9	20	71	13	136	40	37	0	21	1.58
13790620--13790799	7	27.3	7	70	9	103	41	36	0	21	1.58
13790726--13790821	19	5.0	19	72	16	56	40	38	0	20	1.53
13793002--13793073	37	1.9	37	86	5	101	34	22	11	31	1.89
13793451--13793886	221	2.0	221	87	2	635	35	9	13	40	1.78
13794227--13794264	20	1.9	20	94	0	67	81	5	2	10	0.94
13794216--13794267	25	2.2	24	82	6	61	82	3	3	9	0.91
13794174--13794268	32	2.8	32	73	19	86	76	6	4	12	1.11
13794626--13794706	21	4.0	20	79	12	85	44	23	6	25	1.76
13795074--13795243	3	58.3	3	76	12	158	61	2	4	31	1.32
13795289--13795439	37	4.1	37	85	1	187	33	21	9	35	1.85
13797758--13798389	326	1.9	327	86	2	896	46	13	11	29	1.77
13798553--13798610	18	3.3	18	78	9	75	72	0	18	8	1.10
13798542--13798648	34	3.6	29	73	21	87	73	0	18	7	1.06
13798543--13798652	45	2.4	44	77	10	107	74	0	18	7	1.04
13800640--13800761	31	3.9	31	79	7	122	37	16	22	23	1.93
13800650--13800804	62	2.5	61	75	9	152	36	16	22	24	1.94
13800634--13800819	93	2.0	93	79	2	203	37	17	21	23	1.94
13800781--13800931	31	4.8	32	77	5	121	37	17	19	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13800779--13800931	62	2.5	62	74	0	144	37	16	19	26	1.93
13801150--13801192	20	2.2	20	87	8	61	67	0	18	13	1.23
13801694--13801982	48	5.8	49	80	7	208	31	13	14	40	1.84
13801686--13801947	48	5.3	50	79	11	220	32	12	13	41	1.82
13801822--13801952	52	2.6	52	83	9	155	33	11	12	42	1.78
13801686--13801983	49	6.0	50	80	7	259	31	13	14	40	1.84
13802318--13802398	30	2.7	30	94	1	135	40	16	14	28	1.88
13803439--13803485	22	2.2	22	88	3	69	19	14	6	59	1.56
13803450--13803495	11	4.3	11	78	13	51	23	13	4	58	1.52
13804304--13804399	49	2.0	49	93	0	165	27	12	10	50	1.73
13804486--13804570	20	4.2	20	80	3	73	44	32	0	22	1.53
13805085--13805161	26	3.0	26	80	17	81	42	32	2	22	1.67
13805084--13805188	33	3.2	32	80	9	108	42	34	1	20	1.63
13805145--13805199	20	2.8	20	88	5	76	45	34	0	20	1.51
13805090--13805195	7	15.7	7	76	18	82	43	33	1	20	1.63
13809717--13809787	37	1.9	37	85	0	97	43	1	8	46	1.42
13809831--13810019	72	2.6	70	75	6	182	39	9	10	41	1.71
13810055--13810247	72	2.7	73	86	3	241	38	11	8	40	1.72
13810740--13810769	12	2.4	13	88	11	53	63	0	0	36	0.95
13812278--13812337	3	20.3	3	96	3	113	68	0	0	31	0.90
13813776--13813826	24	2.1	24	85	0	66	43	23	15	17	1.88
13816691--13816725	16	2.2	17	90	10	56	0	11	2	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13826522--13826606	44	1.9	44	85	0	116	42	8	23	25	1.82
13832469--13832510	12	3.6	12	77	6	50	83	2	7	7	0.89
13834658--13834731	32	2.3	31	84	9	87	33	21	16	28	1.95
13835321--13835561	104	2.3	104	80	4	261	36	16	11	35	1.84
13835420--13835473	22	2.4	22	81	3	63	37	16	9	37	1.81
13835533--13835587	22	2.5	22	85	5	67	32	27	12	27	1.93
13835425--13835663	126	1.9	126	87	0	352	35	17	14	33	1.90
13837254--13837287	14	2.4	14	95	0	59	17	0	0	82	0.67
13837615--13837998	208	1.9	206	80	3	448	41	7	11	39	1.71
13843752--13843918	40	4.2	40	73	8	135	32	14	5	46	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74