genome.fa.s212.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  3  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306676--306726	26	2.0	25	88	3	75	25	3	17	52	1.61
306736--306797	31	2.0	32	84	9	83	29	12	19	38	1.89
307198--307250	23	2.3	23	80	6	63	15	3	1	79	0.96
307290--307354	20	3.4	18	72	21	53	9	12	3	75	1.15
307374--307709	58	5.7	58	88	6	482	45	6	13	34	1.68
308312--308462	54	2.8	53	80	5	162	49	6	11	32	1.64
310297--310327	15	2.1	15	100	0	62	61	0	6	32	1.21
311664--311754	30	3.0	30	88	0	128	48	21	21	7	1.75
311602--311730	69	1.9	68	85	6	183	48	20	22	8	1.76
311690--311774	30	2.8	30	85	0	98	51	21	21	5	1.68
311664--311781	60	2.0	60	79	3	130	50	21	22	5	1.70
313013--313206	99	2.0	99	91	0	316	17	29	25	27	1.97
316457--316519	24	2.6	24	94	0	108	38	53	1	6	1.36
316607--316636	3	10.0	3	100	0	60	33	66	0	0	0.92
318103--318134	2	16.0	2	100	0	64	50	0	0	50	1.00
318163--318196	2	17.0	2	100	0	68	50	0	0	50	1.00
318103--318227	62	2.0	62	100	0	250	36	11	9	43	1.73
323703--323748	2	23.0	2	100	0	92	50	0	50	0	1.00
328240--328274	2	17.5	2	100	0	70	48	0	0	51	1.00
337748--337804	23	2.5	23	80	2	62	64	7	8	19	1.44
337822--337859	15	2.6	15	83	4	51	76	2	0	21	0.91
341294--341326	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341790--341835	23	1.9	25	86	8	69	65	0	4	30	1.12
341888--341956	11	5.8	11	71	18	50	44	2	1	50	1.25
341980--342023	13	3.4	13	87	6	63	31	4	2	61	1.28
341980--342023	6	6.8	6	80	14	52	31	4	2	61	1.28
343396--343428	17	1.9	17	88	11	50	27	0	3	69	1.03
343914--343944	16	2.0	15	93	6	53	32	0	0	67	0.91
343916--343953	16	2.4	16	86	8	51	34	2	0	63	1.09
352086--352132	12	3.9	12	79	17	53	46	0	2	51	1.13
352541--352634	19	4.8	18	76	14	80	41	0	6	52	1.27
352541--352624	10	8.5	10	72	16	68	42	0	5	51	1.26
352599--352659	19	3.0	21	75	18	58	32	0	4	62	1.17
352517--352659	10	14.6	9	69	15	61	39	0	5	55	1.24
352673--352721	11	4.5	11	82	5	64	24	2	6	67	1.24
353106--353176	35	2.0	36	94	2	126	36	9	0	53	1.34
353197--353230	17	2.0	17	100	0	68	52	17	0	29	1.45
357941--357965	2	12.5	2	100	0	50	52	0	48	0	1.00
358297--358347	24	2.1	24	89	7	77	54	0	3	41	1.19
360301--360341	21	2.0	21	95	0	73	46	26	12	14	1.80
363966--363993	3	9.3	3	100	0	56	32	0	0	67	0.91
372786--372810	3	8.3	3	100	0	50	68	32	0	0	0.90
376148--376208	24	2.4	26	76	17	65	37	1	0	60	1.07
380453--380491	20	2.0	20	94	0	69	33	5	23	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384139--384163	13	1.9	13	100	0	50	40	24	20	16	1.91
391132--391192	30	2.0	30	96	0	113	29	11	16	42	1.83
391902--391945	20	2.3	19	81	14	54	56	4	0	38	1.20
408703--408733	1	31.0	1	100	0	62	0	0	0	100	0.00
424759--424799	18	2.3	18	87	4	57	51	4	7	36	1.51
426076--426123	14	3.4	14	77	11	53	56	0	0	43	0.99
426063--426137	27	2.8	26	76	9	78	53	0	0	46	1.00
426110--426155	23	1.9	25	86	8	69	52	0	0	47	1.00
426443--426482	2	20.0	2	100	0	80	50	0	0	50	1.00
432306--432385	4	20.0	4	94	0	142	47	25	2	25	1.64
435279--435317	19	2.0	20	90	5	62	43	0	0	56	0.99
435343--435381	17	2.2	18	90	4	62	64	0	0	35	0.94
436290--436321	5	6.4	5	100	0	64	78	0	0	21	0.76
438113--438181	35	2.0	34	88	2	102	66	1	2	28	1.14
438159--438188	13	2.3	13	94	0	51	83	0	3	13	0.77
439976--440007	15	2.1	15	100	0	64	6	31	15	46	1.71
443798--443833	2	18.5	2	94	5	65	50	0	50	0	1.00
443820--443889	29	2.4	29	95	0	122	51	2	37	8	1.47
448308--448348	2	20.5	2	100	0	82	51	0	48	0	1.00
451596--451621	2	13.0	2	100	0	52	0	0	50	50	1.00
453973--454014	3	14.3	3	90	5	68	30	2	0	66	1.04
454272--454301	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457764--457831	10	6.9	10	74	15	61	1	44	2	51	1.25
459563--459762	99	2.0	101	94	1	350	27	14	21	37	1.92
462823--462854	6	5.3	6	100	0	64	15	15	15	53	1.74
516168--516194	10	2.7	10	100	0	54	59	0	0	40	0.98
529985--530025	15	2.9	14	82	7	55	41	2	0	56	1.13
529986--530030	15	3.1	14	81	9	54	44	2	2	51	1.26
535069--535102	17	1.9	18	88	5	52	44	0	2	52	1.16
537655--537683	2	14.5	2	100	0	58	51	0	0	48	1.00
546140--546184	2	22.5	2	100	0	90	0	51	0	48	1.00
546186--546221	2	18.0	2	100	0	72	50	0	0	50	1.00
547805--547842	3	12.7	3	100	0	76	31	0	0	68	0.90
548498--548584	7	12.6	7	70	22	51	17	1	3	78	0.96
548507--548552	16	3.0	16	81	12	53	21	0	2	76	0.90
548496--548606	57	1.9	58	81	13	133	18	1	4	75	1.06
548496--548607	55	2.0	57	81	13	135	18	1	4	75	1.07
552790--552829	20	2.0	21	90	5	64	55	0	17	27	1.43
553482--553528	22	2.1	22	100	0	94	34	0	23	42	1.54
554796--554846	25	2.0	25	100	0	102	45	7	19	27	1.78
567774--567798	2	12.5	2	100	0	50	52	0	48	0	1.00
580321--580346	2	13.0	2	100	0	52	0	50	0	50	1.00
583343--583381	16	2.6	14	81	18	51	38	0	0	61	0.96
583347--583381	16	2.1	17	94	5	63	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583470--583516	19	2.5	18	86	6	58	46	0	0	53	1.00
583470--583526	20	2.9	19	80	17	55	47	0	0	52	1.00
583481--583526	20	2.2	20	85	11	58	47	0	0	52	1.00
583502--583558	25	2.2	25	81	3	60	50	3	0	45	1.18
583550--583626	39	1.9	41	82	10	97	61	2	0	36	1.10
608990--609086	49	2.0	49	95	0	176	43	7	13	36	1.72
611266--611301	19	1.9	18	88	5	54	66	2	0	30	1.06
611323--611367	24	1.9	24	86	4	65	57	6	0	35	1.25
613461--613500	13	3.1	13	81	0	53	57	0	0	42	0.98
613426--613503	33	2.4	31	79	10	93	56	1	0	42	1.07
613460--613509	26	1.9	26	83	0	64	62	0	0	38	0.96
616186--616222	18	2.1	19	90	10	60	40	5	0	54	1.24
616991--617118	46	2.8	46	87	0	193	34	10	12	42	1.78
628770--628805	17	2.1	17	89	0	54	63	11	5	19	1.46
634667--634712	18	2.6	18	82	6	58	36	0	0	63	0.95
634792--634852	19	3.1	19	80	7	68	60	0	1	37	1.07
636335--636378	2	22.5	2	83	4	54	50	0	2	47	1.13
641443--641499	27	2.1	27	93	0	96	26	3	26	43	1.70
648060--648096	19	1.9	20	88	5	58	54	0	0	45	1.00
648970--649003	3	11.3	3	93	0	59	29	67	2	0	1.05
649320--649360	18	2.3	18	91	8	66	17	68	0	14	1.22
652422--652455	12	2.8	12	86	0	50	23	52	2	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678301--678359	27	2.1	28	93	3	102	79	3	10	6	1.03
678308--678353	15	3.3	14	74	20	51	78	2	10	8	1.05
702049--702155	52	2.1	52	89	0	160	45	21	18	14	1.84
704567--704659	45	2.0	45	91	2	150	38	17	11	32	1.86
709283--709393	29	3.7	28	72	18	89	36	5	2	54	1.37
709284--709413	62	2.1	62	80	5	138	39	4	2	53	1.34
709458--709509	18	2.9	18	80	8	54	42	0	0	57	0.98
709475--709530	26	2.2	26	87	9	80	39	0	0	60	0.97
709554--709672	61	2.0	61	98	0	229	46	10	10	32	1.72
710883--710937	23	2.4	22	84	9	65	25	5	10	58	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74