genome.fa.s212.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  26  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5975734--5975783	24	2.1	24	85	7	66	56	6	2	36	1.36
5976816--5977216	61	6.7	59	84	6	486	33	13	6	46	1.68
5976816--5977218	119	3.3	118	87	5	542	33	13	6	46	1.69
5976816--5977216	60	6.7	59	84	6	504	33	13	6	46	1.68
5977256--5977296	10	4.0	10	81	6	55	82	2	4	9	0.89
5977255--5977294	21	2.0	19	90	9	62	80	2	7	10	1.00
5977261--5977312	27	1.9	27	85	14	72	78	1	7	11	1.02
5977335--5977370	4	8.8	4	87	6	54	75	0	2	22	0.94
5977338--5977365	13	2.2	13	100	0	56	78	0	0	21	0.75
5978308--5978415	22	5.0	21	70	17	71	66	4	0	27	1.17
5978368--5978447	41	2.0	41	80	9	92	66	2	1	30	1.13
5978419--5978492	3	24.7	3	76	17	57	70	4	1	24	1.13
5978420--5978481	31	2.0	31	84	6	81	70	4	1	22	1.14
5978660--5978728	1	69.0	1	76	0	57	1	0	11	86	0.62
5978662--5978730	14	5.4	13	80	15	72	1	0	13	85	0.66
5978660--5978729	33	2.2	32	89	5	106	1	0	12	85	0.66
5978660--5978728	23	3.0	23	85	2	95	1	0	11	86	0.62
5978739--5979213	42	11.1	41	80	12	487	38	22	16	23	1.93
5980421--5980481	31	2.0	31	90	6	97	4	16	0	78	0.91
5980822--5980851	10	3.0	10	100	0	60	0	10	0	90	0.47
5984401--5984863	62	7.6	62	85	8	566	33	12	6	47	1.66
5984622--5984719	32	3.2	31	63	16	78	34	14	7	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5984896--5984963	20	3.2	20	82	12	66	76	1	10	11	1.09
5984913--5984965	11	5.0	10	77	18	54	75	1	9	13	1.12
5984982--5985026	4	10.8	4	81	9	54	75	2	2	20	1.01
5984982--5985021	13	3.1	13	89	7	55	77	2	0	20	0.88
5984982--5985021	17	2.4	17	95	0	71	77	2	0	20	0.88
5985933--5986007	31	2.6	30	82	15	88	66	4	0	29	1.09
5985942--5986033	37	2.5	36	76	3	85	64	4	1	30	1.20
5986021--5986096	3	24.7	3	77	15	57	69	3	1	25	1.13
5985934--5986090	40	3.9	38	74	18	106	66	3	1	28	1.16
5987487--5987534	21	2.2	21	77	3	51	47	8	8	35	1.64
5987518--5987630	22	5.2	22	82	8	99	51	4	7	36	1.51
5987739--5987811	22	3.3	22	74	0	65	50	6	9	32	1.61
5988358--5988431	22	3.4	22	77	7	69	51	8	6	33	1.58
5988517--5988571	21	2.5	23	80	14	71	40	0	9	50	1.34
5988517--5988573	22	2.7	21	83	10	71	40	0	8	50	1.33
5988672--5988769	22	4.5	22	78	0	97	47	8	8	35	1.63
5988672--5988769	44	2.2	44	83	0	115	47	8	8	35	1.63
5988669--5988811	22	6.5	22	76	3	72	44	6	10	39	1.64
5988817--5988930	22	5.2	22	77	6	97	49	9	3	37	1.53
5988823--5988942	44	2.7	42	82	5	114	47	10	4	38	1.56
5988817--5988965	22	6.8	22	79	4	90	46	10	5	38	1.60
5988868--5988965	44	2.2	44	80	3	108	46	10	5	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5988934--5988975	22	1.9	22	85	9	59	42	14	11	30	1.81
5989445--5989616	22	7.9	22	76	7	100	45	8	6	39	1.61
5989560--5989623	22	2.9	22	83	0	74	54	4	6	34	1.46
5989815--5989864	22	2.3	22	78	0	55	48	8	8	36	1.62
5990458--5990516	24	2.5	22	80	20	59	50	8	5	35	1.55
5994393--5994431	2	19.5	2	100	0	78	0	48	0	51	1.00
5994431--5994463	2	16.5	2	100	0	66	48	0	0	51	1.00
5998502--5998546	22	2.0	22	86	0	63	60	0	0	40	0.97
6006252--6006288	19	1.9	19	100	0	74	32	16	24	27	1.96
6006254--6006295	19	2.2	19	86	0	57	40	19	21	19	1.92
6011174--6011203	2	15.0	2	100	0	60	50	0	50	0	1.00
6013523--6013615	43	2.2	43	94	1	161	23	11	13	50	1.75
6022427--6022460	12	2.7	12	90	9	50	88	5	2	2	0.70
6031132--6031179	18	2.7	18	83	0	60	62	2	0	35	1.07
6035489--6035593	48	2.2	48	94	0	183	37	15	12	35	1.85
6037573--6037619	23	2.0	23	95	0	85	55	0	19	25	1.43
6045331--6045363	3	11.0	3	100	0	66	66	0	33	0	0.92
6045517--6045547	8	3.9	8	95	0	53	61	3	35	0	1.12
6046396--6046428	10	3.1	11	86	8	50	54	0	0	45	0.99
6053963--6053997	18	1.9	18	88	11	54	11	14	2	71	1.25
6054859--6054884	1	26.0	1	100	0	52	100	0	0	0	0.00
6063947--6063972	11	2.4	11	100	0	52	7	0	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6070035--6070273	118	2.0	119	97	0	453	26	15	17	41	1.89
6082918--6082973	29	1.9	29	85	0	76	41	16	0	42	1.48
6085783--6085894	40	2.8	40	84	0	152	38	16	8	36	1.79
6086424--6086779	148	2.5	143	81	8	391	53	5	16	24	1.64
6086439--6086788	48	7.2	48	76	12	261	52	5	16	25	1.64
6086803--6086932	36	3.6	36	81	3	163	50	7	16	25	1.71
6086803--6086950	36	4.1	36	76	8	140	50	8	15	26	1.72
6086803--6086939	72	1.9	72	83	5	181	50	7	16	26	1.70
6090390--6090507	40	3.0	40	81	1	121	38	20	4	37	1.72
6090712--6090852	70	2.0	70	95	0	255	27	13	16	42	1.85
6095009--6095058	21	2.4	21	79	0	55	16	30	14	40	1.87
6102322--6102699	186	2.0	187	89	2	573	35	13	11	39	1.80
6102640--6102758	59	2.0	59	100	0	238	35	13	9	42	1.76
6102454--6102939	246	2.0	244	89	2	751	34	13	10	41	1.80
6102699--6103687	185	5.3	186	85	1	1252	33	12	12	41	1.81
6102322--6103129	431	1.9	432	85	2	1113	34	13	11	40	1.81
6102454--6103040	246	2.4	245	82	4	560	34	14	10	40	1.80
6102699--6103687	372	2.7	370	85	1	1286	33	12	12	41	1.81
6107593--6107663	35	2.0	35	88	0	106	30	18	15	35	1.92
6108881--6108918	10	4.0	10	83	13	53	47	0	0	52	1.00
6116474--6116512	12	3.1	12	82	13	51	41	0	2	56	1.13
6121928--6121978	21	2.4	21	96	0	93	35	19	15	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6139668--6139709	7	5.7	7	79	20	50	16	2	2	78	0.96
6139684--6139709	13	2.0	13	100	0	52	15	0	0	84	0.62
6140551--6140595	16	2.9	15	81	12	54	11	4	2	82	0.91
6140713--6140738	9	2.9	9	100	0	52	11	0	0	88	0.52
6140822--6140932	42	2.6	43	82	4	143	40	17	15	27	1.89
6141573--6141978	22	17.7	22	70	18	133	35	14	11	39	1.81
6141574--6142031	46	9.9	46	84	3	575	35	14	11	38	1.82
6141574--6142031	93	5.0	93	86	4	610	35	14	11	38	1.82
6141635--6142031	139	2.8	139	95	1	688	35	14	11	39	1.81
6143174--6143248	17	4.4	17	80	12	82	2	10	0	86	0.66
6143175--6143254	8	9.6	8	85	10	90	2	11	0	86	0.67
6143168--6143254	11	7.8	11	79	19	92	3	11	0	85	0.72
6143173--6143232	1	60.0	1	79	0	66	0	10	0	90	0.47
6143176--6143254	34	2.4	34	85	10	101	2	11	0	86	0.68
6147377--6147427	27	1.9	27	84	4	68	39	11	5	43	1.66
6147447--6147502	26	2.1	28	83	6	71	32	1	3	62	1.23
6149767--6149809	22	2.0	22	90	0	68	44	9	11	34	1.73
6153349--6153408	24	2.6	22	82	10	68	65	3	1	30	1.19
6154988--6155030	18	2.5	18	88	7	63	79	0	9	11	0.95
6155902--6155969	31	2.2	32	81	7	77	57	10	2	29	1.47
6156081--6156131	20	2.5	20	83	0	66	45	11	5	37	1.65
6156271--6156323	23	2.3	23	78	12	56	71	0	5	22	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6156928--6156963	17	2.1	17	90	10	56	63	22	0	13	1.29
6159114--6159199	24	3.6	25	73	14	67	38	0	0	61	0.96
6159142--6159197	6	9.7	6	84	11	57	32	0	0	67	0.91
6159142--6159194	16	3.5	15	84	10	72	32	0	0	67	0.91
6159968--6160584	304	2.0	304	80	5	694	36	12	13	36	1.84
6164758--6165899	187	6.1	185	81	5	1144	41	12	11	35	1.78
6164758--6165872	375	3.0	370	83	4	1368	41	12	10	35	1.77
6173920--6173948	7	4.1	7	100	0	58	44	0	0	55	0.99
6177079--6177114	12	2.9	12	87	4	54	36	0	0	63	0.94
6177406--6177459	26	2.0	27	85	3	74	38	1	12	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74